Rh6DG424200

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
60514681 .. 60515122
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG424200.1

Sequence Viewer

Length: 150 bp
ATGGCGTCGTTCGCTGAAGCTCCATCGGGAGATGCCAAGGCTGGAGAGAAGATCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGACAAAGGCGCCGGCCACAAGCAAGTTACAATTGAAATTGAGCAAGGAGTCGAGAAAAATTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

5.19

Weight (kDa)

6.7

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024881)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0122901
rosa_roxburghii Rroxscaffold_3G00239190
rosa_samantha Rh6DG424200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 2 cut(s) 5, 96
AgsI TTSAA 2 cut(s) 58, 122
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AoxI GGCC 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 71, 98
BanI GGYRCC 1 cut(s) 95
BccI CCATC 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 99
BglII AGATCT 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 63
BsaHI GRCGYC 2 cut(s) 5, 96
BsaJI CCNNGG 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 51
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 51
BssNI GRCGYC 2 cut(s) 5, 96
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 2 cut(s) 5, 96
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 71, 98
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 11, 75
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 71, 98
Cfr10I RCCGGY 1 cut(s) 98
CviJI RGCY 3 cut(s) 20, 41, 102
CviKI_1 RGCY 3 cut(s) 20, 41, 102
DdeI CTNAG 1 cut(s) 72
DinI GGCGCC 1 cut(s) 97
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 87
GlaI GCGC 2 cut(s) 70, 97
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 71, 98
Hin1I GRCGYC 2 cut(s) 5, 96
Hin6I GCGC 2 cut(s) 69, 96
HinP1I GCGC 2 cut(s) 69, 96
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 135
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 27, 58, 139
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 10, 89
HpyCH4III ACNGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 75
HpyF3I CTNAG 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 5, 96
HspAI GCGC 2 cut(s) 69, 96
KasI GGCGCC 1 cut(s) 95
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 27, 112
LweI GCATC 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 46, 61
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 1 cut(s) 51
MluCI AATT 3 cut(s) 117, 123, 145
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 53
MspI CCGG 1 cut(s) 99
MunI CAATTG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 11, 75
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 96
NdeII GATC 1 cut(s) 51
NgoMIV GCCGGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 53
PleI GAGTC 1 cut(s) 143
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 51
SalI GTCGAC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 144
SetI ASST 1 cut(s) 22
SfaNI GCATC 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 97
SgeI CNNG 9 cut(s) 39, 49, 54, 70, 76, 111, 118, 122, 143
Sse9I AATT 3 cut(s) 117, 123, 145
SspDI GGCGCC 1 cut(s) 95
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 87, 138
TasI AATT 3 cut(s) 117, 123, 145
TscAI CASTG 1 cut(s) 80
TspRI CASTG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.