Rh6DG487000

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0032434
Physical Location & Seq
Forward (+)
64861218 .. 64864283
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG487000.1

Sequence Viewer

Length: 480 bp
ATGTTGTTGAGCAGCGCTGCTCCACAGAACACCCAATCTGGAAGGGTTTGTGAACAATACAAATCGTTAAGTGGAACGCTTAGAGACCCAAGTTGTGACTTTAGTGAGAGACAGAGAGAGAAGAGTGCTAATAAGGCTTCTGGGCAAGAAGAAGAGGGCAGTATGGCGCCGTTTCCTGAAAAGGTTCAAGTTGGAGGATCACCACAATATAAGCTGAAAAGGAAGCTGGGCAAAATGGCTTTTGTCCAAGCTAACAGCTTTACGCCTTTACGTTTACAAGCAGCTAAAGGCCTGGACCAATATTATTTGCTCTCTGGTCATGCCGGGGGTGCAATTATATTTTTCTCAAGGAAAGAGACTACTATGGAGGATGTCAATGTCAGTGATGAGAAGGAGAAGATTCGGTGTAACAAAGAGGTGGAGCAGAAGCTGAACCATATCAATGATATGCCCGCAGCATTGCGCGGGTTTGATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

159

Amino Acids

17.62

Weight (kDa)

8.74

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032434)

Species Orthologous Gene IDs
rosa_rugosa Rorug06G0373100
rosa_samantha Rh6DG487000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 1 cut(s) 465
AciI CCGC 2 cut(s) 453, 465
AclWI GGATC 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 167
AfeI AGCGCT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 6 cut(s) 214, 226, 251, 258, 284, 430
AluI AGCT 6 cut(s) 214, 226, 251, 258, 284, 430
Alw26I GTCTC 3 cut(s) 78, 103, 350
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 430
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 4 cut(s) 12, 17, 281, 455
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 3 cut(s) 17, 169, 465
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 192
AvaII GGWCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 4, 24, 293, 467
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 78, 103, 350
BfaI CTAG 1 cut(s) 478
BfoI RGCGCY 2 cut(s) 18, 170
BisI GCNGC 4 cut(s) 13, 18, 282, 456
BlsI GCNGC 4 cut(s) 14, 19, 283, 457
Bme1390I CCNGG 2 cut(s) 293, 325
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 2 cut(s) 293, 325
BmsI GCATC 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 458
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 458
BseXI GCAGC 4 cut(s) 4, 24, 293, 467
BseYI CCCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 324
BsmAI GTCTC 3 cut(s) 78, 103, 350
BsnI GGCC 1 cut(s) 291
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 2 cut(s) 453, 465
BspANI GGCC 1 cut(s) 291
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 1 cut(s) 197
BssNI GRCGYC 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 116, 147
BstACI GRCGYC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 465
BstH2I RGCGCY 2 cut(s) 18, 170
BstHHI GCGC 3 cut(s) 17, 169, 465
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 3 cut(s) 78, 103, 350
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 134, 329
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 291, 323
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 4, 24, 293, 467
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 453
CaiI CAGNNNCTG 1 cut(s) 430
CfoI GCGC 3 cut(s) 17, 169, 465
Cfr13I GGNCC 1 cut(s) 295
CviAII CATG 1 cut(s) 320
CviJI RGCY 9 cut(s) 137, 214, 226, 239, 251, 258, 284, 291, 430
CviKI_1 RGCY 9 cut(s) 137, 214, 226, 239, 251, 258, 284, 291, 430
DdeI CTNAG 1 cut(s) 80
DinI GGCGCC 1 cut(s) 168
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 116, 147
EarI CTCTTC 2 cut(s) 116, 147
Eco147I AGGCCT 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 295
Eco47III AGCGCT 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
FaeI CATG 1 cut(s) 323
FaiI YATR 7 cut(s) 164, 210, 321, 338, 365, 438, 449
FatI CATG 1 cut(s) 319
FauI CCCGC 2 cut(s) 458, 460
Fnu4HI GCNGC 4 cut(s) 13, 18, 282, 456
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 4 cut(s) 13, 18, 282, 456
FspBI CTAG 1 cut(s) 478
GlaI GCGC 3 cut(s) 16, 168, 464
GluI GCNGC 4 cut(s) 13, 18, 282, 456
GsaI CCCAGC 1 cut(s) 230
HaeII RGCGCY 2 cut(s) 18, 170
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 324
HhaI GCGC 3 cut(s) 17, 169, 465
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 3 cut(s) 15, 167, 463
HinP1I GCGC 3 cut(s) 15, 167, 463
HinfI GANTC 1 cut(s) 400
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 53, 275
Hpy188III TCNNGA 2 cut(s) 39, 176
Hpy8I GTNNAC 2 cut(s) 53, 275
HpyAV CCTTC 2 cut(s) 36, 385
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 329
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 3 cut(s) 15, 167, 463
KasI GGCGCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 25, 421
LpnPI CCDG 8 cut(s) 24, 126, 189, 212, 278, 300, 305, 337
Lsp1109I GCAGC 4 cut(s) 4, 24, 293, 467
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 478
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 95, 407
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 4 cut(s) 133, 161, 164, 409
MluCI AATT 1 cut(s) 333
Mly113I GGCGCC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 4 cut(s) 148, 188, 361, 409
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 293, 325
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 134, 329
NarI GGCGCC 1 cut(s) 167
NciI CCSGG 1 cut(s) 325
NdeII GATC 1 cut(s) 197
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 95
PceI AGGCCT 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 4 cut(s) 14, 19, 283, 457
PluTI GGCGCC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 4 cut(s) 13, 18, 282, 456
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 2 cut(s) 293, 325
SetI ASST 9 cut(s) 186, 216, 228, 253, 260, 274, 286, 420, 432
SfaNI GCATC 1 cut(s) 463
SfoI GGCGCC 1 cut(s) 168
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 1 cut(s) 333
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 2 cut(s) 453, 465
SspDI GGCGCC 1 cut(s) 166
SspI AATATT 1 cut(s) 302
SspMI CTAG 1 cut(s) 478
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 291, 323
TaiI ACGT 1 cut(s) 274
TasI AATT 1 cut(s) 333
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 4 cut(s) 12, 17, 281, 455
Tsp45I GTSAC 1 cut(s) 95
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.