Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011619

Physical Location & Seq

Genomic Coordinates Reverse (-)

51948746 .. 51951526

Gene Structure 2781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0373100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTAGGAAGACTGAGCATCCAGCAAGAAGAGAAGCATTTTTCAAGGCCCTTATGGGTGATTTTTCTCAGCATCTGCGTATACCATCAGCGTTTATCAAGAACTTGAACAGACGCTCACTGCACATATGTCGTCTTAAAGGCCCTAGTGGACAATGTTGGGTTGTGGAATTGGAAAAGAGAGGCAATCGATTGTTTTTCCATAAGGGTTGGGAGGAATTTGTGAAGCATCATCCTCTAGAAGTTGGGGATTTTCTGATTTTCGGTTACGATGGTGTGTCCATGTTCGATGTGACCATATATGGCAAAACTTTCTGTGAGAAGAATGTAAAAGCAGCCAAGAGGAGAAGTGACAGTAATGGTATTGCTGCCAAAAGAAGTGGTAAGTTGCCAAGGAGAAGTGACAGTCATGCTGACAAAAGAAGGGTTGATGATGTAGAAGAAACTTCTGTTCGACCCATTCCATTCCAATCAAAGAATTCTTTTATCTGTAGAGTTTTGAAGGCACGTACATTGTATGAAGTGTATATTCCGATGGAAGTAGTCATAGCGGAAGGTTTAAAGGCTGGGATGGCCATAAAGATTCAAGATACATTTGGGATGTCATGGCATCTTAGACTCCGTGCTAACCATGATCGTGTGCTGATGAGGTTGGGCTTGTCAAATATATGCAAAGCAAACAAAACTTCACATGGGGACACTGTGATCTTTGAGTTTGTCAAGCCAAGAGTAGTGCAACTTCATATTATCAGAGCAGGAGCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

255

Amino Acids

29.31

Weight (kDa)

10.07

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	14 - 98	6.1e-15	B3 DNA binding domain
B3	PF02362	175 - 249	8.1e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309591 RchiOBHm_Chr6g0309611
rosa_laevigata	RLG00000010550
rosa_multiflora	Rmu_sc0007632.1_g000001 Rmu_sc0007632.1_g000003 Rmu_sc0008462.1_g000004
rosa_rugosa	Rorug06G0373000 Rorug06G0373000 Rorug06G0373100
rosa_samantha	Rh6AG486700 Rh6BG496000 Rh6BG496100 Rh6BG496300 Rh6CG500900 Rh6CG501000 Rh6DG486800 Rh6DG486900 Rh6DG487100
rosa_wichuraiana	Rw6G042380 Rw6G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	82
AciI	CCGC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	2 cut(s)	218, 478
AfaI	GTAC	1 cut(s)	511
AgsI	TTSAA	4 cut(s)	46, 109, 502, 587
AluBI	AGCT	1 cut(s)	761
AluI	AGCT	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	48, 142, 573
ApeKI	GCWGC	2 cut(s)	335, 368
ApoI	RAATTY	2 cut(s)	218, 478
AspS9I	GGNCC	2 cut(s)	49, 143
AsuHPI	GGTGA	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	575
BarI	GAAGNNNNNNTAC	2 cut(s)	723, 755
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	347, 355
BccI	CCATC	4 cut(s)	94, 266, 529, 565
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BfaI	CTAG	4 cut(s)	6, 147, 239, 766
BfmI	CTRYAG	1 cut(s)	490
BisI	GCNGC	2 cut(s)	336, 369
BlsI	GCNGC	2 cut(s)	337, 370
BmgT120I	GGNCC	2 cut(s)	49, 143
BmsI	GCATC	4 cut(s)	28, 82, 238, 619
BpiI	GAAGAC	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	4 cut(s)	19, 232, 576, 606
BseMII	CTCAG	2 cut(s)	6, 83
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	347, 355
BseYI	CCCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	50, 144, 575
BshVI	ATCGAT	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	710
BsnI	GGCC	3 cut(s)	50, 144, 575
Bsp143I	GATC	2 cut(s)	634, 705
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	3 cut(s)	50, 144, 575
BspCNI	CTCAG	2 cut(s)	7, 82
BspDI	ATCGAT	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	634, 705
BssNAI	GTATAC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	356, 407, 703
Bst6I	CTCTTC	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	15, 69, 614
BstF5I	GGATG	4 cut(s)	19, 232, 576, 606
BstKTI	GATC	2 cut(s)	637, 708
BstMBI	GATC	2 cut(s)	634, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstSFI	CTRYAG	1 cut(s)	490
BstV1I	GCAGC	2 cut(s)	347, 355
BstV2I	GAAGAC	1 cut(s)	17
BstZ17I	GTATAC	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	50, 144, 575
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	19, 232, 576, 606
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	119, 699
CaiI	CAGNNNCTG	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	49, 143
ClaI	ATCGAT	1 cut(s)	190
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	510
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	5 cut(s)	283, 410, 606, 632, 692
CviJI	RGCY	9 cut(s)	5, 50, 144, 338, 566, 575, 657, 724, 761
CviKI_1	RGCY	9 cut(s)	5, 50, 144, 338, 566, 575, 657, 724, 761
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	3 cut(s)	15, 69, 614
DpnI	GATC	2 cut(s)	636, 707
DpnII	GATC	2 cut(s)	634, 705
DraI	TTTAAA	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	392
EcoO109I	RGGNCCY	2 cut(s)	49, 143
EcoRI	GAATTC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	5 cut(s)	286, 413, 609, 635, 695
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	5 cut(s)	282, 409, 605, 631, 691
FauNDI	CATATG	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	336, 369
FokI	GGATG	4 cut(s)	6, 219, 583, 613
Fsp4HI	GCNGC	2 cut(s)	336, 369
FspBI	CTAG	4 cut(s)	6, 147, 239, 766
GluI	GCNGC	2 cut(s)	336, 369
GsaI	CCCAGC	1 cut(s)	570
HaeIII	GGCC	3 cut(s)	50, 144, 575
HgaI	GACGC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	286, 413, 609, 635, 695
HinfI	GANTC	2 cut(s)	583, 618
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	83, 152
Hpy188I	TCNGA	3 cut(s)	258, 534, 752
Hpy188III	TCNNGA	3 cut(s)	100, 239, 587
Hpy8I	GTNNAC	2 cut(s)	83, 152
HpyAV	CCTTC	3 cut(s)	417, 496, 548
HpyCH4III	ACNGT	3 cut(s)	356, 407, 703
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	124, 672, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	3 cut(s)	15, 69, 614
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	5 cut(s)	286, 413, 609, 635, 695
Kzo9I	GATC	2 cut(s)	634, 705
LmnI	GCTCC	1 cut(s)	758
LpnPI	CCDG	3 cut(s)	36, 552, 741
Lsp1109I	GCAGC	2 cut(s)	347, 355
LweI	GCATC	4 cut(s)	28, 82, 238, 619
MaeI	CTAG	4 cut(s)	6, 147, 239, 766
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	4 cut(s)	266, 292, 350, 401
MalI	GATC	2 cut(s)	636, 707
MboI	GATC	2 cut(s)	634, 705
MboII	GAAGA	4 cut(s)	22, 42, 334, 452
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	3 cut(s)	170, 218, 478
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	612
MnlI	CCTC	5 cut(s)	176, 208, 246, 336, 642
Mox20I	TGGCCA	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	2 cut(s)	138, 560
MslI	CAYNNNNRTG	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeI	CATATG	1 cut(s)	128
NdeII	GATC	2 cut(s)	634, 705
NlaIII	CATG	5 cut(s)	286, 413, 609, 635, 695
NmuCI	GTSAC	3 cut(s)	292, 350, 401
PfeI	GAWTC	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	337, 370
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
Ppu21I	YACGTR	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	566
PspPI	GGNCC	2 cut(s)	49, 143
PstNI	CAGNNNCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	138, 560
SatI	GCNGC	2 cut(s)	336, 369
Sau3AI	GATC	2 cut(s)	634, 705
Sau96I	GGNCC	2 cut(s)	49, 143
SchI	GAGTC	1 cut(s)	612
SetI	ASST	4 cut(s)	511, 559, 653, 763
SfaNI	GCATC	4 cut(s)	28, 82, 238, 619
SfcI	CTRYAG	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	636
Sse9I	AATT	3 cut(s)	170, 218, 478
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	4 cut(s)	6, 147, 239, 766
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	356, 407, 703
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	3 cut(s)	190, 288, 454
TasI	AATT	3 cut(s)	170, 218, 478
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	2 cut(s)	138, 560
Tru9I	TTAA	2 cut(s)	138, 560
TscAI	CASTG	2 cut(s)	126, 706
TseFI	GTSAC	3 cut(s)	292, 350, 401
TseI	GCWGC	2 cut(s)	335, 368
Tsp45I	GTSAC	3 cut(s)	292, 350, 401
TspDTI	ATGAA	2 cut(s)	534, 731
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	2 cut(s)	126, 706
XapI	RAATTY	2 cut(s)	218, 478
XbaI	TCTAGA	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	82
XspI	CTAG	4 cut(s)	6, 147, 239, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.