Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011619

Physical Location & Seq

Genomic Coordinates Forward (+)

2569881 .. 2572614

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTGGAAGAGAATGAGAGGATGGTGGGTCTGGTGATGGAGCTGGTTCACCGGAAAAACAAACTCGGCTGCTGGGATCATTGTCGCAGAGGGTGGAGCAGCTGGAGAGGGCTCTCATCAATGAGAGATTTAAGGAGAAAGAAGAGGAGACATGATCTTATAAATTCGTGCAATGGTTTCATTTGTTTAGAAGGAAATCAAGGAATGAGTATTATAGATGAGAAGAGCTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTACCTAAGGAAAAGTATATAGAATCGGATGGATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATAAAAGAGTTTCGACTACTACCCCTACCAAGCTGCATTGTACACTTGGAGAGTTGGAGGAGGCATGGAGGTTGAGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCCCGGTGAAGAAAATGTTAACGAATGTGACGTGTGGGTTATGAAGGATTACGGTATCCAAGAGTCTTGGACTAAAGTTTTTGTTATAAAAAACTTGCAGCTTCCGCCAGCACCAGAGTACTATAGACCATATTATGAACCAGTTATGTTTTTGAGTGATGGGAGCATTCTAATATCATATTGTAATGAAGTTTTCATTTCTTATAACCAAGAAATGGGGAGTTACTTGAAAATCGAAGGTTACTCGGGAAGGATAATTGCTAACCATCCAAGCTTTGTTTCCCTCTGCACTTTTTCAAATGGAGCGAAAGTTGAAAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATCTTATGATGACTCTGCTGTTCATGAGGTACTGGATTCCCCTGGGAGGATTGGGACTCAATGTGCTCGATGTGATGGGAACCTGGGTTATGTTGTCAGAGGCAAGGGGTTCGCAGTGTGTGAAAATTGCTTCAACAAAGGTTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

317

Amino Acids

35.87

Weight (kDa)

6.61

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309591 RchiOBHm_Chr6g0309611
rosa_laevigata	RLG00000010550
rosa_multiflora	Rmu_sc0007632.1_g000001 Rmu_sc0007632.1_g000003 Rmu_sc0008462.1_g000004
rosa_rugosa	Rorug06G0373000 Rorug06G0373000 Rorug06G0373100
rosa_samantha	Rh6AG486700 Rh6BG496000 Rh6BG496100 Rh6BG496300 Rh6CG500900 Rh6CG501000 Rh6DG486800 Rh6DG486900 Rh6DG487100
rosa_wichuraiana	Rw6G042380 Rw6G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	161, 530, 648
AccB7I	CCANNNNNTGG	1 cut(s)	658
AciI	CCGC	2 cut(s)	272, 548
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	3 cut(s)	379, 563, 831
AfeI	AGCGCT	1 cut(s)	328
AfiI	CCNNNNNNNGG	4 cut(s)	250, 251, 658, 846
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	4 cut(s)	673, 741, 758, 934
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	841, 882
AjuI	GAANNNNNNNTTGG	2 cut(s)	706, 738
AluBI	AGCT	6 cut(s)	43, 102, 228, 370, 544, 717
AluI	AGCT	6 cut(s)	43, 102, 228, 370, 544, 717
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	2 cut(s)	142, 434
AlwI	GGATC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	688
Aor51HI	AGCGCT	1 cut(s)	328
ApeKI	GCWGC	4 cut(s)	69, 99, 370, 541
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	329
AsuC2I	CCSGG	2 cut(s)	245, 447
AsuHPI	GGTGA	3 cut(s)	41, 46, 461
AvaI	CYCGRG	1 cut(s)	688
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	868
BbvI	GCAGC	4 cut(s)	56, 111, 357, 553
BccI	CCATC	6 cut(s)	16, 31, 296, 596, 717, 869
BcgI	CGANNNNNNTGC	2 cut(s)	892, 926
BciT130I	CCWGG	2 cut(s)	843, 884
BciVI	GTATCC	1 cut(s)	509
BcnI	CCSGG	2 cut(s)	245, 447
BcoDI	GTCTC	2 cut(s)	142, 434
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	4 cut(s)	70, 100, 371, 542
BlsI	GCNGC	4 cut(s)	71, 101, 372, 543
BmcAI	AGTACT	1 cut(s)	563
Bme1390I	CCNGG	4 cut(s)	245, 447, 843, 884
BmeT110I	CYCGRG	1 cut(s)	688
BmgBI	CACGTC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	881, 943
BmrFI	CCNGG	4 cut(s)	245, 447, 843, 884
BpmI	CTGGAG	1 cut(s)	124
BpuMI	CCSGG	2 cut(s)	245, 447
BsaJI	CCNNGG	3 cut(s)	841, 842, 883
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 251, 658, 846
Bse1I	ACTGG	2 cut(s)	584, 837
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	843, 884
BseDI	CCNNGG	3 cut(s)	841, 842, 883
BseGI	GGATG	3 cut(s)	27, 307, 709
BseLI	CCNNNNNNNGG	4 cut(s)	250, 251, 658, 846
BseMI	GCAATG	1 cut(s)	178
BseNI	ACTGG	2 cut(s)	584, 837
BseRI	GAGGAG	2 cut(s)	160, 410
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	4 cut(s)	56, 111, 357, 553
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	688
BsiSI	CCGG	3 cut(s)	52, 245, 447
BslFI	GGGAC	2 cut(s)	327, 868
BslI	CCNNNNNNNGG	4 cut(s)	250, 251, 658, 846
BsmAI	GTCTC	2 cut(s)	142, 434
BsmFI	GGGAC	2 cut(s)	327, 868
BsmI	GAATGC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	688
Bsp1286I	GDGCHC	3 cut(s)	114, 447, 868
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	2 cut(s)	76, 154
BspACI	CCGC	2 cut(s)	272, 548
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	2 cut(s)	881, 943
BspPI	GGATC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	584, 837
BssECI	CCNNGG	3 cut(s)	841, 842, 883
BssMI	GATC	2 cut(s)	76, 154
Bst2UI	CCWGG	2 cut(s)	843, 884
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	3 cut(s)	3, 137, 218
BstAUI	TGTACA	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	27, 307, 709
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	79, 157
BstMAI	GTCTC	2 cut(s)	142, 434
BstMBI	GATC	2 cut(s)	76, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNI	CCWGG	2 cut(s)	843, 884
BstSCI	CCNGG	4 cut(s)	243, 445, 841, 882
BstSFI	CTRYAG	1 cut(s)	565
BstSLI	GKGCMC	1 cut(s)	447
BstV1I	GCAGC	4 cut(s)	56, 111, 357, 553
Bsu36I	CCTNAGG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	509
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	3 cut(s)	27, 307, 709
BtsI	GCAGTG	1 cut(s)	921
BtsIMutI	CAGTG	1 cut(s)	921
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	378, 562, 830
CviAII	CATG	3 cut(s)	152, 402, 824
CviJI	RGCY	8 cut(s)	43, 69, 102, 112, 228, 370, 544, 717
CviKI_1	RGCY	8 cut(s)	43, 69, 102, 112, 228, 370, 544, 717
CviQI	GTAC	3 cut(s)	378, 562, 830
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	78, 156
DpnII	GATC	2 cut(s)	76, 154
Eam1104I	CTCTTC	3 cut(s)	3, 137, 218
EarI	CTCTTC	3 cut(s)	3, 137, 218
EciI	GGCGGA	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	114
Eco47III	AGCGCT	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	688
EcoRII	CCWGG	2 cut(s)	841, 882
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	3 cut(s)	155, 405, 827
FaqI	GGGAC	2 cut(s)	327, 868
FatI	CATG	3 cut(s)	151, 401, 823
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	70, 100, 371, 542
FokI	GGATG	3 cut(s)	34, 314, 696
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	70, 100, 371, 542
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	70, 100, 371, 542
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	330
HapII	CCGG	3 cut(s)	52, 245, 447
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	155, 405, 827
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	6 cut(s)	296, 506, 800, 812, 836, 856
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	3 cut(s)	52, 245, 447
HphI	GGTGA	3 cut(s)	41, 46, 461
Hpy166II	GTNNAC	3 cut(s)	49, 380, 463
Hpy188I	TCNGA	2 cut(s)	301, 899
Hpy188III	TCNNGA	3 cut(s)	690, 824, 948
Hpy8I	GTNNAC	3 cut(s)	49, 380, 463
HpyAV	CCTTC	4 cut(s)	185, 481, 674, 687
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	5 cut(s)	171, 240, 373, 541, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	155, 405, 827
HspAI	GCGC	1 cut(s)	327
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	76, 154
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	4 cut(s)	40, 96, 606, 746
Lsp1109I	GCAGC	4 cut(s)	56, 111, 357, 553
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	5 cut(s)	247, 331, 470, 665, 683
MalI	GATC	2 cut(s)	78, 156
MboI	GATC	2 cut(s)	76, 154
MboII	GAAGA	4 cut(s)	20, 154, 235, 464
MhlI	GDGCHC	3 cut(s)	114, 447, 868
MluCI	AATT	3 cut(s)	163, 699, 925
MlyI	GAGTC	3 cut(s)	515, 806, 850
MmeI	TCCRAC	1 cut(s)	372
MseI	TTAA	2 cut(s)	131, 462
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	3 cut(s)	52, 245, 447
MspR9I	CCNGG	4 cut(s)	245, 447, 843, 884
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	2 cut(s)	843, 884
MwoI	GCNNNNNNNGC	1 cut(s)	547
NciI	CCSGG	2 cut(s)	245, 447
NdeII	GATC	2 cut(s)	76, 154
NlaIII	CATG	3 cut(s)	155, 405, 827
NlaIV	GGNNCC	2 cut(s)	881, 943
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	331, 470
PagI	TCATGA	1 cut(s)	823
PasI	CCCWGGG	1 cut(s)	842
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	296, 800, 836
PflMI	CCANNNNNTGG	1 cut(s)	658
PkrI	GCNGC	4 cut(s)	71, 101, 372, 543
PleI	GAGTC	3 cut(s)	514, 806, 850
PpsI	GAGTC	3 cut(s)	514, 806, 850
PsiI	TTATAA	3 cut(s)	161, 530, 648
Psp6I	CCWGG	2 cut(s)	841, 882
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	841, 882
PspN4I	GGNNCC	2 cut(s)	881, 943
PvuII	CAGCTG	1 cut(s)	102
RsaI	GTAC	3 cut(s)	379, 563, 831
RsaNI	GTAC	3 cut(s)	378, 562, 830
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	131, 462
SatI	GCNGC	4 cut(s)	70, 100, 371, 542
Sau3AI	GATC	2 cut(s)	76, 154
ScaI	AGTACT	1 cut(s)	563
SchI	GAGTC	3 cut(s)	515, 806, 850
ScrFI	CCNGG	4 cut(s)	245, 447, 843, 884
SduI	GDGCHC	3 cut(s)	114, 447, 868
SfcI	CTRYAG	1 cut(s)	565
Sse9I	AATT	3 cut(s)	163, 699, 925
SsiI	CCGC	2 cut(s)	272, 548
StyD4I	CCNGG	4 cut(s)	243, 445, 841, 882
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	3 cut(s)	350, 678, 868
TasI	AATT	3 cut(s)	163, 699, 925
TatI	WGTACW	2 cut(s)	377, 561
TfiI	GAWTC	3 cut(s)	296, 800, 836
Tru1I	TTAA	2 cut(s)	131, 462
Tru9I	TTAA	2 cut(s)	131, 462
TscAI	CASTG	1 cut(s)	921
TseFI	GTSAC	2 cut(s)	331, 470
TseI	GCWGC	4 cut(s)	69, 99, 370, 541
Tsp45I	GTSAC	2 cut(s)	331, 470
TspDTI	ATGAA	7 cut(s)	169, 250, 500, 594, 628, 645, 812
TspRI	CASTG	1 cut(s)	921
Van91I	CCANNNNNTGG	1 cut(s)	658
XapI	RAATTY	1 cut(s)	163
ZrmI	AGTACT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.