Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011619

Physical Location & Seq

Genomic Coordinates Reverse (-)

69694378 .. 69697419

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG496000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTCTGCACTTCGCTCCTCGCAGCTCATCGTGATCAAGAGTTTGTCTGTGATGGCAAAGACGACTCTTCCAGTGGTGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCGGTTTCCTGGAATGGTCAACACCCAGAAACATCCAAGTAAAGCTGTTCTTTTAAGACACAAGATGTATTTGAAGTGGAATGTGGCAATGTGCAGTGAACGGTTGAGGCAATCCACCCCAATGGCTTTACACTACCACTTTAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATCTTATGATGACTCTGCTGTTTATGAGGTGGTGCCACCCCAAGATTCCGAAAAACGTAACACCTGCTCCGACCAGTCTGCTTTTGTAGAGGGTCTTTCTAAGGCCACAAAATCCTCTCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGTGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGATTCGCAGTGTGTGAAAACTGCTTCAACAAAGGTTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

180

Amino Acids

20.41

Weight (kDa)

8.06

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309591 RchiOBHm_Chr6g0309611
rosa_laevigata	RLG00000010550
rosa_multiflora	Rmu_sc0007632.1_g000001 Rmu_sc0007632.1_g000003 Rmu_sc0008462.1_g000004
rosa_rugosa	Rorug06G0373000 Rorug06G0373000 Rorug06G0373100
rosa_samantha	Rh6AG486700 Rh6BG496000 Rh6BG496100 Rh6BG496300 Rh6CG500900 Rh6CG501000 Rh6DG486800 Rh6DG486900 Rh6DG487100
rosa_wichuraiana	Rw6G042380 Rw6G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	196, 526
AjnI	CCWGG	2 cut(s)	130, 474
AluBI	AGCT	3 cut(s)	26, 105, 167
AluI	AGCT	3 cut(s)	26, 105, 167
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	2 cut(s)	47, 461
BcgI	CGANNNNNNTGC	4 cut(s)	365, 399, 484, 518
BciT130I	CCWGG	2 cut(s)	132, 476
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	132, 476
BmiI	GGNNCC	3 cut(s)	339, 473, 535
BmrFI	CCNGG	2 cut(s)	132, 476
BmsI	GCATC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	434, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	2 cut(s)	72, 379
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	132, 476
BseDI	CCNNGG	2 cut(s)	434, 475
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	72, 379
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	339, 473, 535
BspMI	ACCTGC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	72, 379
BssECI	CCNNGG	2 cut(s)	434, 475
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	132, 476
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	2 cut(s)	132, 476
BstSCI	CCNGG	2 cut(s)	130, 474
BstV1I	GCAGC	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	223, 513
BtsIMutI	CAGTG	3 cut(s)	79, 223, 513
BveI	ACCTGC	1 cut(s)	377
CviJI	RGCY	5 cut(s)	26, 105, 167, 248, 410
CviKI_1	RGCY	5 cut(s)	26, 105, 167, 248, 410
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	130, 474
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaiI	YATR	4 cut(s)	288, 312, 330, 483
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FaqI	GGGAC	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	7 cut(s)	65, 305, 317, 350, 428, 448, 501
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	142, 221
Hpy188I	TCNGA	3 cut(s)	355, 376, 491
Hpy188III	TCNNGA	4 cut(s)	32, 38, 425, 540
Hpy8I	GTNNAC	2 cut(s)	142, 221
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	9, 216
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	21, 377
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	460
MlyI	GAGTC	3 cut(s)	59, 311, 442
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	9 cut(s)	29, 73, 108, 222, 325, 388, 430, 432, 485
MseI	TTAA	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	132, 476
MvaI	CCWGG	2 cut(s)	132, 476
NdeII	GATC	1 cut(s)	34
NlaIV	GGNNCC	3 cut(s)	339, 473, 535
PaqCI	CACCTGC	1 cut(s)	377
PfeI	GAWTC	4 cut(s)	305, 350, 428, 501
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	3 cut(s)	59, 311, 442
PpsI	GAGTC	3 cut(s)	59, 311, 442
Psp6I	CCWGG	2 cut(s)	130, 474
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	2 cut(s)	130, 474
PspN4I	GGNNCC	3 cut(s)	339, 473, 535
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	3 cut(s)	59, 311, 442
ScrFI	CCNGG	2 cut(s)	132, 476
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	8 cut(s)	28, 107, 169, 336, 364, 371, 477, 535
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	130, 474
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	460
TfiI	GAWTC	4 cut(s)	305, 350, 428, 501
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TscAI	CASTG	3 cut(s)	79, 223, 513
TseI	GCWGC	1 cut(s)	23
TspRI	CASTG	3 cut(s)	79, 223, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.