Rh6BG496300

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011619
Physical Location & Seq
Reverse (-)
69727828 .. 69729808
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG496300.1

Sequence Viewer

Length: 1482 bp
ATGCTGAGAGAAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGGAACCAGATCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAACTCATATTCTCTCAAGTCTTTGTTTCAAGACGGTCGCCATATGCAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCAATTTTGCTCATCTCCACTATTCAAAATCTATCGACAACCTTGGTTTTTTGAGCCAAGCAAACTGGACTATCACCTACATGAAAGAAGAATGTGCTACTTCTGATAAGTACATAGAACTGACTTTCGAGGATATGTTAAGAGAGAGGTTTCCCACTTCTTTTTATCTTCGGTTTATAAATTCGTGCAATGGTTTTATTTGTTTAGAAGGAAATCAAGGAATGAGAATTAGAGATGAGGAGAGCTTGTATGTGTGCAATCCGGTTACGGGCGAGTTTATCACTATCCCCCTACCTAAGCAAAAGTGCAGAGGCTCGTATGAATTTGTGGGACTTAGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAAACGAGCACCTCCGTTTACGACCAGGGGGAGAAGGAGGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGTGCAACCTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGTTCCATCGCTTTCAATTTTTTCTCCTACAGGCGAGTGTATACATTCTTTCGACTTTGAAAAAGAAGAGTTTCGACGACTACCCCTACCAAGCTGCATTGTACACTTGGACGAGGCATGGAGGTTGGGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCGAGGTGAAGAAAATTTTAACGAATGTGACGTGTGGGTTATGAAGGATTACGGTATCCAAGAGTCTTGGACTAAAGTTTTTGTTATAAAAAACTTGCAGGTTTATCCGCCAGCACCAGAGTACTATAGACCATATTATGAACCAGTTATGTTTTTGAGTGATGGGAGCATTCTAATATCATATTGTAATGAAGTTTTCATTTCTTATAACCAAGAAATGGATAGTTACGTGAAAATCGAAGGTTATTCGGGAAGGATAATTGCTTACCATCCAAGCTTTGTTTCCCTTTGCACTTTTTCAAATGGAGCGAAAGTTGAAAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATCTTATGATGACTATGCTGGTTATGAGGTGGTGCCATCCCAAGATTCCGAAAAAAGTAACACCTGCTCCGACCAGTCTGCTCTTGTAGAGGGTCTTTCAAAGGCCACAAAATCCTCTCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGCGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTTGCAGTGTGTGAAAATTGCTTCGACAAAGGTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

493

Amino Acids

56.35

Weight (kDa)

5.84

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 3.4e-07 F-box domain
FBA_1 PF07734 92 - 369 1.5e-22 F-box associated beta propeller domain
FBA_3 PF08268 115 - 325 1.2e-21 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 126 - 273 4.4e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 383, 971, 1092
AarI CACCTGC 2 cut(s) 156, 1316
Acc36I ACCTGC 3 cut(s) 156, 973, 1316
AccB1I GGYRCC 1 cut(s) 1276
AccB7I CCANNNNNTGG 1 cut(s) 1102
AccI GTMKAC 1 cut(s) 766
AciI CCGC 2 cut(s) 201, 992
AcsI RAATTY 4 cut(s) 385, 527, 697, 898
AfaI GTAC 4 cut(s) 317, 566, 828, 1007
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 4 cut(s) 165, 473, 1102, 1377
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 8 cut(s) 148, 231, 686, 741, 785, 1185, 1202, 1344
AjiI CACGTC 1 cut(s) 916
AjnI CCWGG 2 cut(s) 600, 1413
AjuI GAANNNNNNNTTGG 2 cut(s) 1150, 1182
AluBI AGCT 5 cut(s) 25, 450, 716, 819, 1161
AluI AGCT 5 cut(s) 25, 450, 716, 819, 1161
Alw21I GWGCWC 3 cut(s) 587, 718, 1399
Alw26I GTCTC 2 cut(s) 55, 875
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 1 cut(s) 1347
ApeKI GCWGC 1 cut(s) 819
ApoI RAATTY 4 cut(s) 385, 527, 697, 898
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 551
AsuHPI GGTGA 2 cut(s) 271, 902
BanI GGYRCC 1 cut(s) 1276
BanII GRGCYC 1 cut(s) 718
Bbv12I GWGCWC 3 cut(s) 587, 718, 1399
BbvI GCAGC 1 cut(s) 806
BccI CCATC 5 cut(s) 739, 1040, 1161, 1288, 1400
BcgI CGANNNNNNTGC 2 cut(s) 1304, 1338
BciT130I CCWGG 2 cut(s) 602, 1415
BciVI GTATCC 1 cut(s) 950
BcoDI GTCTC 2 cut(s) 55, 875
BfmI CTRYAG 2 cut(s) 753, 1009
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 3 cut(s) 156, 973, 1316
BfuI GTATCC 1 cut(s) 950
BisI GCNGC 1 cut(s) 820
BlsI GCNGC 1 cut(s) 821
BmcAI AGTACT 1 cut(s) 1007
Bme1390I CCNGG 2 cut(s) 602, 1415
BmgBI CACGTC 1 cut(s) 916
BmiI GGNNCC 6 cut(s) 51, 669, 729, 1278, 1412, 1474
BmrFI CCNGG 2 cut(s) 602, 1415
BmsI GCATC 1 cut(s) 1391
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 1114
BsaJI CCNNGG 4 cut(s) 247, 601, 1373, 1414
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 6 cut(s) 437, 467, 1182, 1212, 1295, 1325
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 473, 1102, 1377
Bse1I ACTGG 3 cut(s) 275, 1028, 1318
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 2 cut(s) 602, 1415
BseDI CCNNGG 4 cut(s) 247, 601, 1373, 1414
BseGI GGATG 2 cut(s) 1153, 1280
BseLI CCNNNNNNNGG 4 cut(s) 165, 473, 1102, 1377
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 3 cut(s) 275, 1028, 1318
BseRI GAGGAG 2 cut(s) 458, 657
BseXI GCAGC 1 cut(s) 806
BsgI GTGCAG 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 1349
BshNI GGYRCC 1 cut(s) 1276
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 587, 718, 1399
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 2 cut(s) 549, 1399
BslI CCNNNNNNNGG 4 cut(s) 165, 473, 1102, 1377
BsmAI GTCTC 2 cut(s) 55, 875
BsmFI GGGAC 2 cut(s) 549, 1399
BsmI GAATGC 1 cut(s) 1053
BsnI GGCC 1 cut(s) 1349
Bsp1286I GDGCHC 3 cut(s) 587, 718, 1399
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 2 cut(s) 201, 992
BspANI GGCC 1 cut(s) 1349
BspCNI CTCAG 1 cut(s) 610
BspLI GGNNCC 6 cut(s) 51, 669, 729, 1278, 1412, 1474
BspMI ACCTGC 3 cut(s) 156, 973, 1316
BspQI GCTCTTC 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 1276
BsrDI GCAATG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 826
BsrI ACTGG 3 cut(s) 275, 1028, 1318
BssECI CCNNGG 4 cut(s) 247, 601, 1373, 1414
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 767
BssT1I CCWWGG 2 cut(s) 247, 1373
Bst1107I GTATAC 1 cut(s) 767
Bst2UI CCWGG 2 cut(s) 602, 1415
Bst4CI ACNGT 2 cut(s) 154, 938
Bst6I CTCTTC 2 cut(s) 723, 786
BstAUI TGTACA 1 cut(s) 826
BstBAI YACGTR 1 cut(s) 1114
BstC8I GCNNGC 1 cut(s) 996
BstDEI CTNAG 6 cut(s) 5, 44, 115, 501, 539, 618
BstF5I GGATG 2 cut(s) 1153, 1280
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 55, 875
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 156
BstNI CCWGG 2 cut(s) 602, 1415
BstSCI CCNGG 2 cut(s) 600, 1413
BstSFI CTRYAG 2 cut(s) 753, 1009
BstV1I GCAGC 1 cut(s) 806
BstZ17I GTATAC 1 cut(s) 767
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 1 cut(s) 1349
BtgZI GCGATG 2 cut(s) 717, 1419
BtrI CACGTC 1 cut(s) 916
BtsCI GGATG 2 cut(s) 1153, 1280
BtsI GCAGTG 1 cut(s) 1452
BtsIMutI CAGTG 1 cut(s) 1452
BveI ACCTGC 3 cut(s) 156, 973, 1316
Cac8I GCNNGC 1 cut(s) 996
CfoI GCGC 1 cut(s) 551
Csp6I GTAC 4 cut(s) 316, 565, 827, 1006
CviAII CATG 4 cut(s) 87, 183, 286, 843
CviQI GTAC 4 cut(s) 316, 565, 827, 1006
DdeI CTNAG 6 cut(s) 5, 44, 115, 501, 539, 618
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 723, 786
EarI CTCTTC 2 cut(s) 723, 786
EciI GGCGGA 2 cut(s) 190, 981
Ecl136II GAGCTC 1 cut(s) 716
Eco130I CCWWGG 2 cut(s) 247, 1373
Eco24I GRGCYC 1 cut(s) 718
Eco47III AGCGCT 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 2 cut(s) 600, 1413
EcoT14I CCWWGG 2 cut(s) 247, 1373
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 247, 1373
FaeI CATG 4 cut(s) 90, 186, 289, 846
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 2 cut(s) 549, 1399
FatI CATG 4 cut(s) 86, 182, 285, 842
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 1 cut(s) 820
FokI GGATG 2 cut(s) 1140, 1267
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 1 cut(s) 820
GlaI GCGC 1 cut(s) 550
GluI GCNGC 1 cut(s) 820
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 1 cut(s) 1349
HapII CCGG 1 cut(s) 467
HhaI GCGC 1 cut(s) 551
Hin1II CATG 4 cut(s) 90, 186, 289, 846
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HindIII AAGCTT 2 cut(s) 23, 1159
HinfI GANTC 6 cut(s) 93, 947, 1244, 1289, 1367, 1387
HpaII CCGG 1 cut(s) 467
HphI GGTGA 2 cut(s) 271, 902
Hpy166II GTNNAC 3 cut(s) 595, 767, 829
Hpy188I TCNGA 6 cut(s) 60, 310, 1294, 1315, 1430, 1481
Hpy188III TCNNGA 3 cut(s) 148, 1134, 1364
Hpy8I GTNNAC 3 cut(s) 595, 767, 829
Hpy99I CGWCG 1 cut(s) 804
HpyAV CCTTC 5 cut(s) 407, 604, 922, 1118, 1131
HpyCH4III ACNGT 2 cut(s) 154, 938
HpyCH4IV ACGT 2 cut(s) 915, 1113
HpyF3I CTNAG 6 cut(s) 5, 44, 115, 501, 539, 618
HpySE526I ACGT 2 cut(s) 915, 1113
Hsp92II CATG 4 cut(s) 90, 186, 289, 846
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 723
LmnI GCTCC 5 cut(s) 673, 713, 1050, 1190, 1316
Lsp1109I GCAGC 1 cut(s) 806
LweI GCATC 1 cut(s) 1391
MaeII ACGT 2 cut(s) 915, 1113
MaeIII GTNAC 7 cut(s) 39, 118, 469, 553, 911, 1109, 1301
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 6 cut(s) 20, 305, 365, 710, 803, 905
MhlI GDGCHC 3 cut(s) 587, 718, 1399
MlyI GAGTC 2 cut(s) 956, 1381
MmeI TCCRAC 1 cut(s) 1338
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 2 cut(s) 344, 903
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 602, 1415
Mva1269I GAATGC 1 cut(s) 1053
MvaI CCWGG 2 cut(s) 602, 1415
NdeI CATATG 1 cut(s) 161
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 90, 186, 289, 846
NlaIV GGNNCC 6 cut(s) 51, 669, 729, 1278, 1412, 1474
NmuCI GTSAC 3 cut(s) 39, 553, 911
PaqCI CACCTGC 2 cut(s) 156, 1316
PciSI GCTCTTC 1 cut(s) 723
PcsI WCGNNNNNNNCGW 2 cut(s) 912, 1119
PctI GAATGC 1 cut(s) 1053
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 4 cut(s) 93, 1244, 1289, 1367
PflMI CCANNNNNTGG 1 cut(s) 1102
PkrI GCNGC 1 cut(s) 821
PleI GAGTC 2 cut(s) 955, 1381
PpsI GAGTC 2 cut(s) 955, 1381
Ppu21I YACGTR 1 cut(s) 1114
PsiI TTATAA 3 cut(s) 383, 971, 1092
Psp124BI GAGCTC 1 cut(s) 718
Psp6I CCWGG 2 cut(s) 600, 1413
PspGI CCWGG 2 cut(s) 600, 1413
PspN4I GGNNCC 6 cut(s) 51, 669, 729, 1278, 1412, 1474
RsaI GTAC 4 cut(s) 317, 566, 828, 1007
RsaNI GTAC 4 cut(s) 316, 565, 827, 1006
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 718
SapI GCTCTTC 1 cut(s) 723
SaqAI TTAA 2 cut(s) 344, 903
SatI GCNGC 1 cut(s) 820
Sau3AI GATC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 1007
SchI GAGTC 2 cut(s) 956, 1381
ScrFI CCNGG 2 cut(s) 602, 1415
SduI GDGCHC 3 cut(s) 587, 718, 1399
SfaNI GCATC 1 cut(s) 1391
SfcI CTRYAG 2 cut(s) 753, 1009
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SsiI CCGC 2 cut(s) 201, 992
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 2 cut(s) 600, 1413
StyI CCWWGG 2 cut(s) 247, 1373
TaaI ACNGT 2 cut(s) 154, 938
TaiI ACGT 2 cut(s) 918, 1116
TaqI TCGA 7 cut(s) 240, 333, 777, 799, 1122, 1399, 1464
TatI WGTACW 4 cut(s) 315, 564, 826, 1005
TfiI GAWTC 4 cut(s) 93, 1244, 1289, 1367
Tru1I TTAA 2 cut(s) 344, 903
Tru9I TTAA 2 cut(s) 344, 903
TscAI CASTG 1 cut(s) 1452
TseFI GTSAC 3 cut(s) 39, 553, 911
TseI GCWGC 1 cut(s) 819
Tsp45I GTSAC 3 cut(s) 39, 553, 911
TspDTI ATGAA 8 cut(s) 302, 540, 710, 710, 941, 1038, 1072, 1089
TspGWI ACGGA 2 cut(s) 580, 726
TspRI CASTG 1 cut(s) 1452
Van91I CCANNNNNTGG 1 cut(s) 1102
XapI RAATTY 4 cut(s) 385, 527, 697, 898
XmiI GTMKAC 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 795
ZrmI AGTACT 1 cut(s) 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.