Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011619

Physical Location & Seq

Genomic Coordinates Reverse (-)

65856728 .. 65858370

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G042380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGAATTACAGATGAGAAGAGGTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTACCTAAGGAAAAGTATTTAGAATCGGATGCATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAGACGAGCACCTCCGTTTACGACCAGGGGGAGAAGGAGGCTAAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGTGCAACCTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGCTCCATCGCTTTCGATTTTTTCTTCTACAGGCGAGTGTATACATTCTTTCGACTTTGAAAAAGAGGAGTTTCGACGGCTACCCCTACCAAGCTGCGTTGTACACGTGGAGGAGTCATGGTACGAGGAGAAGGCATGGAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATCTTATGATGACTCTGCTGTTTATGAGGTGGTGCCACCCCACGATTCCGAAAAAAGTAACACCTGCTCCGACCAGTCTGCTTTTGTAGAGGGTCTTTCTAAGGTCACAAAATCCTCTTTTGTTTTATTTCAGCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGTGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTCGCAGTGTGTGAAAATTGCTTCAACAAAGGTTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

243

Amino Acids

27.45

Weight (kDa)

5.48

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	4 - 132	2.7e-15	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	4 - 131	9.9e-07	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	7 - 132	3.7e-15	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309591 RchiOBHm_Chr6g0309611
rosa_laevigata	RLG00000010550
rosa_multiflora	Rmu_sc0007632.1_g000001 Rmu_sc0007632.1_g000003 Rmu_sc0008462.1_g000004
rosa_rugosa	Rorug06G0373000 Rorug06G0373000 Rorug06G0373100
rosa_samantha	Rh6AG486700 Rh6BG496000 Rh6BG496100 Rh6BG496300 Rh6CG500900 Rh6CG501000 Rh6DG486800 Rh6DG486900 Rh6DG487100
rosa_wichuraiana	Rw6G042380 Rw6G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	340
AciI	CCGC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	271
AcvI	CACGTG	1 cut(s)	406
AfaI	GTAC	3 cut(s)	140, 402, 422
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	46, 47, 627
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	260, 359, 715
AjnI	CCWGG	2 cut(s)	174, 663
AluBI	AGCT	3 cut(s)	290, 393, 613
AluI	AGCT	3 cut(s)	290, 393, 613
Alw21I	GWGCWC	3 cut(s)	161, 292, 649
Aor51HI	AGCGCT	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	292, 304
BbrPI	CACGTG	1 cut(s)	406
Bbv12I	GWGCWC	3 cut(s)	161, 292, 649
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	2 cut(s)	313, 650
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	4 cut(s)	539, 573, 673, 707
BciT130I	CCWGG	2 cut(s)	176, 665
BcnI	CCSGG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	551
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	3 cut(s)	41, 176, 665
BmiI	GGNNCC	5 cut(s)	243, 303, 513, 662, 724
BmrFI	CCNGG	3 cut(s)	41, 176, 665
BmsI	GCATC	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	175, 623, 664
BsaXI	ACNNNNNCTCC	4 cut(s)	404, 434, 530, 560
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 47, 627
Bse1I	ACTGG	1 cut(s)	553
Bse21I	CCTNAGG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	176, 665
BseDI	CCNNGG	3 cut(s)	175, 623, 664
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	46, 47, 627
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	4 cut(s)	231, 380, 425, 440
BseXI	GCAGC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	3 cut(s)	161, 292, 649
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	123, 649
BslI	CCNNNNNNNGG	3 cut(s)	46, 47, 627
BsmFI	GGGAC	2 cut(s)	123, 649
Bsp1286I	GDGCHC	4 cut(s)	161, 292, 304, 649
Bsp1407I	TGTACA	1 cut(s)	400
BspACI	CCGC	1 cut(s)	68
BspLI	GGNNCC	5 cut(s)	243, 303, 513, 662, 724
BspMI	ACCTGC	1 cut(s)	551
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	511
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	3 cut(s)	175, 623, 664
BssNAI	GTATAC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	623
Bst1107I	GTATAC	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	176, 665
Bst6I	CTCTTC	2 cut(s)	14, 297
BstAUI	TGTACA	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	75, 192, 579
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	176, 665
BstSCI	CCNGG	3 cut(s)	39, 174, 663
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	380
BstZ17I	GTATAC	1 cut(s)	341
Bsu36I	CCTNAGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	702
BveI	ACCTGC	1 cut(s)	551
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	139, 401, 421
CviAII	CATG	2 cut(s)	417, 435
CviJI	RGCY	7 cut(s)	191, 242, 290, 302, 379, 393, 613
CviKI_1	RGCY	7 cut(s)	191, 242, 290, 302, 379, 393, 613
CviQI	GTAC	3 cut(s)	139, 401, 421
DdeI	CTNAG	3 cut(s)	75, 192, 579
Eam1104I	CTCTTC	2 cut(s)	14, 297
EarI	CTCTTC	2 cut(s)	14, 297
Ecl136II	GAGCTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	623
Eco24I	GRGCYC	2 cut(s)	292, 304
Eco47III	AGCGCT	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	290
Eco72I	CACGTG	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	174, 663
EcoT14I	CCWWGG	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	292, 304
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	2 cut(s)	420, 438
FaqI	GGGAC	2 cut(s)	123, 649
FatI	CATG	2 cut(s)	416, 434
FauI	CCCGC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	2 cut(s)	292, 304
Fsp4HI	GCNGC	1 cut(s)	394
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	394
HaeII	RGCGCY	1 cut(s)	126
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	420, 438
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	7 cut(s)	92, 413, 479, 491, 524, 617, 637
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	169, 341, 403
Hpy188I	TCNGA	4 cut(s)	97, 529, 550, 680
Hpy188III	TCNNGA	1 cut(s)	729
Hpy8I	GTNNAC	3 cut(s)	169, 341, 403
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	178, 424
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	5 cut(s)	36, 101, 151, 250, 283
HpyF3I	CTNAG	3 cut(s)	75, 192, 579
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	420, 438
HspAI	GCGC	1 cut(s)	123
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	4 cut(s)	247, 287, 307, 551
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	4 cut(s)	43, 127, 536, 583
MboII	GAAGA	3 cut(s)	31, 284, 315
MhlI	GDGCHC	4 cut(s)	161, 292, 304, 649
MluCI	AATT	4 cut(s)	6, 260, 271, 706
MlyI	GAGTC	3 cut(s)	422, 485, 631
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	3 cut(s)	41, 176, 665
MvaI	CCWGG	2 cut(s)	176, 665
NciI	CCSGG	1 cut(s)	41
NlaIII	CATG	2 cut(s)	420, 438
NlaIV	GGNNCC	5 cut(s)	243, 303, 513, 662, 724
NmuCI	GTSAC	2 cut(s)	127, 583
NsiI	ATGCAT	1 cut(s)	103
PaqCI	CACCTGC	1 cut(s)	551
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	4 cut(s)	92, 479, 524, 617
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	3 cut(s)	421, 485, 631
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
PpsI	GAGTC	3 cut(s)	421, 485, 631
Ppu21I	YACGTR	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	174, 663
PspCI	CACGTG	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	174, 663
PspN4I	GGNNCC	5 cut(s)	243, 303, 513, 662, 724
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	3 cut(s)	140, 402, 422
RsaNI	GTAC	3 cut(s)	139, 401, 421
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	297
SatI	GCNGC	1 cut(s)	394
SchI	GAGTC	3 cut(s)	422, 485, 631
ScrFI	CCNGG	3 cut(s)	41, 176, 665
SduI	GDGCHC	4 cut(s)	161, 292, 304, 649
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	327
Sse9I	AATT	4 cut(s)	6, 260, 271, 706
SsiI	CCGC	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	39, 174, 663
StyI	CCWWGG	1 cut(s)	623
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	4 cut(s)	314, 351, 373, 649
TasI	AATT	4 cut(s)	6, 260, 271, 706
TatI	WGTACW	2 cut(s)	138, 400
TfiI	GAWTC	4 cut(s)	92, 479, 524, 617
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	2 cut(s)	127, 583
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	2 cut(s)	127, 583
TspDTI	ATGAA	3 cut(s)	46, 284, 284
TspGWI	ACGGA	2 cut(s)	154, 300
TspRI	CASTG	1 cut(s)	702
XapI	RAATTY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.