RchiOBHm_Chr6g0309591

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011619
Physical Location & Seq
Reverse (-)
67222619 .. 67224565
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27840

Sequence Viewer

Length: 1494 bp
ATGTTGATAGGAAAGAAACGAAAGCTTCTTCGCGTACCGTCACTAACAAGGAAACCAGATCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTGGTAACTCATATTCTCTCAAGTCTTTGTTTCAAGACGGTCGCCATATGCAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCAAATTTGCCCATCTCCACTATTCAAAATCTATCGGCACCCTTGGTTTTTTGAACCAAGCCTTGAATGTCACCTACATAAAAGAAGCAGCATGTGCTGCTTCTGATAAGTACATAGAACTGACTTTCGAGGATATCTTAAGAGAGAGGTTTCCCAGTACTTCTATTTATTCTCAGTTTATAAATTCGTGCAATGGTTTCATTTGTTTACAAGGAAATCAAACAAGGAGTATTAGAGATGAGAAGAGGTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTACCTAAGGAAAAGTATATAGAATCGGATGCATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAAACGAGCACCTCCGTTTACGACCGGGAGGAGAAAAAGGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGTGCAACATGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGCTCCATCGCTTTCGGTTTTTTCTTCTACAGGCGAGTGTATACATTCTTTCGACTTTGAAAAAGAGGAGTTTCGACGACTACCCCTACCAAGCTGCGTTGTACACGTGGAGGAGTCATGGTACGGGGAGAAGGCATGGAAGTTGGGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCCGGGTGAAGATCATTATAACGAATGTGACGTGTGGGTTATGAAGGATTACGGTGTTCAAGAGTCTTGGACTAAAGTTTTTGTTATAAAAAACTTGCTCCTGGAGACATTGTGTAGACCATATTTTGAACCGCTTATGTTTTTGAGTGATGGGAGCATTCTAATATCATTTTGTAATGAAGTTTTGATTTCTTATAACCAAGAAACGGAGAGTTACTTGAAAATCCAAGGTTACTTGGGAAGGATAACTGCTTACCATCCAAGCTTTGTTTCCCTTTGCACTGTTTCAAATGGAGCGGATGTTGAAAGGATAAGAGATAGTAAGATGTACGACAAGTTGTGTGCTGAATCTTATGATGACTCTGCTGTTTATGAGGTGGTGCCACCCCACGATTCCGAAAAACGTAACACCTGCTCCGACCAGTCTGCTTTTGTAGAGGGTCTTTCTAAGGCCACAAAATCCTCTCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGTGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTCGCAGTGTGTGAAAATTGCTTCAACAAAGGTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

497

Amino Acids

56.31

Weight (kDa)

7.11

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 34 - 72 4.1e-07 F-box domain
FBA_1 PF07734 107 - 374 4.2e-23 F-box associated beta propeller domain
FBA_3 PF08268 119 - 334 1.2e-24 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 128 - 275 2.6e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 389, 927, 995, 1104
AarI CACCTGC 2 cut(s) 159, 1328
Acc36I ACCTGC 2 cut(s) 159, 1328
AccB1I GGYRCC 2 cut(s) 245, 1288
AccBSI CCGCTC 1 cut(s) 1205
AccI GTMKAC 2 cut(s) 772, 1024
AccII CGCG 1 cut(s) 33
AciI CCGC 4 cut(s) 204, 500, 1040, 1205
AcsI RAATTY 3 cut(s) 212, 391, 703
AcvI CACGTG 1 cut(s) 838
AfaI GTAC 7 cut(s) 36, 320, 367, 572, 834, 854, 1238
AfeI AGCGCT 1 cut(s) 556
AfiI CCNNNNNNNGG 5 cut(s) 168, 478, 479, 1114, 1389
AflII CTTAAG 1 cut(s) 346
AflIII ACRYGT 3 cut(s) 685, 835, 939
AjiI CACGTC 1 cut(s) 940
AjnI CCWGG 2 cut(s) 1008, 1425
AjuI GAANNNNNNNTTGG 2 cut(s) 1162, 1194
AluBI AGCT 4 cut(s) 25, 722, 825, 1173
AluI AGCT 4 cut(s) 25, 722, 825, 1173
Alw21I GWGCWC 3 cut(s) 593, 724, 1411
Alw26I GTCTC 3 cut(s) 58, 899, 1007
Aor51HI AGCGCT 1 cut(s) 556
AoxI GGCC 1 cut(s) 1359
ApeKI GCWGC 3 cut(s) 296, 305, 825
ApoI RAATTY 3 cut(s) 212, 391, 703
AspLEI GCGC 1 cut(s) 557
AsuC2I CCSGG 3 cut(s) 473, 608, 912
AsuHPI GGTGA 2 cut(s) 271, 926
AxyI CCTNAGG 1 cut(s) 507
BanI GGYRCC 2 cut(s) 245, 1288
BanII GRGCYC 2 cut(s) 724, 736
BbrPI CACGTG 1 cut(s) 838
Bbv12I GWGCWC 3 cut(s) 593, 724, 1411
BbvI GCAGC 3 cut(s) 292, 308, 812
BccI CCATC 5 cut(s) 228, 745, 1052, 1173, 1412
BcgI CGANNNNNNTGC 4 cut(s) 1316, 1350, 1435, 1469
BciT130I CCWGG 2 cut(s) 1010, 1427
BcnI CCSGG 3 cut(s) 473, 608, 912
BcoDI GTCTC 3 cut(s) 58, 899, 1007
BfmI CTRYAG 1 cut(s) 759
BfoI RGCGCY 1 cut(s) 558
BfrI CTTAAG 1 cut(s) 346
BfuAI ACCTGC 2 cut(s) 159, 1328
BisI GCNGC 3 cut(s) 297, 306, 826
BlsI GCNGC 3 cut(s) 298, 307, 827
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 5 cut(s) 473, 608, 912, 1010, 1427
BmgBI CACGTC 1 cut(s) 940
BmiI GGNNCC 6 cut(s) 247, 675, 735, 1290, 1424, 1486
BmrFI CCNGG 5 cut(s) 473, 608, 912, 1010, 1427
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 520
BmuI ACTGGG 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 1031
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 3 cut(s) 473, 608, 912
BsaAI YACGTR 1 cut(s) 838
BsaJI CCNNGG 4 cut(s) 250, 1135, 1385, 1426
BsaXI ACNNNNNCTCC 8 cut(s) 836, 866, 1004, 1034, 1194, 1224, 1307, 1337
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 478, 479, 1114, 1389
Bse1I ACTGG 2 cut(s) 363, 1330
Bse21I CCTNAGG 1 cut(s) 507
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 2 cut(s) 1010, 1427
BseDI CCNNGG 4 cut(s) 250, 1135, 1385, 1426
BseGI GGATG 3 cut(s) 535, 1165, 1213
BseLI CCNNNNNNNGG 5 cut(s) 168, 478, 479, 1114, 1389
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 395, 615
BseNI ACTGG 2 cut(s) 363, 1330
BseRI GAGGAG 4 cut(s) 626, 663, 812, 857
BseXI GCAGC 3 cut(s) 292, 308, 812
Bsh1236I CGCG 1 cut(s) 33
Bsh1285I CGRYCG 2 cut(s) 159, 607
BshFI GGCC 1 cut(s) 1361
BshNI GGYRCC 2 cut(s) 245, 1288
BsiEI CGRYCG 2 cut(s) 159, 607
BsiHKAI GWGCWC 3 cut(s) 593, 724, 1411
BsiSI CCGG 3 cut(s) 473, 607, 911
BslFI GGGAC 2 cut(s) 555, 1411
BslI CCNNNNNNNGG 5 cut(s) 168, 478, 479, 1114, 1389
BsmAI GTCTC 3 cut(s) 58, 899, 1007
BsmFI GGGAC 2 cut(s) 555, 1411
BsmI GAATGC 1 cut(s) 1065
BsnI GGCC 1 cut(s) 1361
Bsp1286I GDGCHC 4 cut(s) 593, 724, 736, 1411
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 2 cut(s) 58, 919
BspACI CCGC 4 cut(s) 204, 500, 1040, 1205
BspANI GGCC 1 cut(s) 1361
BspCNI CTCAG 2 cut(s) 394, 616
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 6 cut(s) 247, 675, 735, 1290, 1424, 1486
BspMI ACCTGC 2 cut(s) 159, 1328
BspQI GCTCTTC 1 cut(s) 729
BspT107I GGYRCC 2 cut(s) 245, 1288
BspTI CTTAAG 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 1205
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 2 cut(s) 363, 1330
BssECI CCNNGG 4 cut(s) 250, 1135, 1385, 1426
BssMI GATC 2 cut(s) 58, 919
BssNAI GTATAC 1 cut(s) 773
BssT1I CCWWGG 3 cut(s) 250, 1135, 1385
Bst1107I GTATAC 1 cut(s) 773
Bst2UI CCWGG 2 cut(s) 1010, 1427
Bst4CI ACNGT 4 cut(s) 39, 157, 962, 1192
Bst6I CTCTTC 2 cut(s) 446, 729
BstAFI CTTAAG 1 cut(s) 346
BstAPI GCANNNNNTGC 2 cut(s) 302, 305
BstAUI TGTACA 1 cut(s) 832
BstBAI YACGTR 1 cut(s) 838
BstDEI CTNAG 4 cut(s) 381, 507, 624, 1356
BstF5I GGATG 3 cut(s) 535, 1165, 1213
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 2 cut(s) 61, 922
BstMAI GTCTC 3 cut(s) 58, 899, 1007
BstMBI GATC 2 cut(s) 58, 919
BstMCI CGRYCG 2 cut(s) 159, 607
BstMWI GCNNNNNNNGC 2 cut(s) 302, 305
BstNI CCWGG 2 cut(s) 1010, 1427
BstNSI RCATGY 2 cut(s) 303, 689
BstSCI CCNGG 5 cut(s) 471, 606, 910, 1008, 1425
BstSFI CTRYAG 1 cut(s) 759
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 292, 308, 812
BstZ17I GTATAC 1 cut(s) 773
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 1 cut(s) 1361
BtgZI GCGATG 1 cut(s) 723
BtrI CACGTC 1 cut(s) 940
BtsCI GGATG 3 cut(s) 535, 1165, 1213
BtsI GCAGTG 1 cut(s) 1464
BtsIMutI CAGTG 2 cut(s) 1188, 1464
BveI ACCTGC 2 cut(s) 159, 1328
CfoI GCGC 1 cut(s) 557
Csp6I GTAC 7 cut(s) 35, 319, 366, 571, 833, 853, 1237
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 6 cut(s) 90, 186, 300, 686, 849, 867
CviQI GTAC 7 cut(s) 35, 319, 366, 571, 833, 853, 1237
DdeI CTNAG 4 cut(s) 381, 507, 624, 1356
DpnI GATC 2 cut(s) 60, 921
DpnII GATC 2 cut(s) 58, 919
Eam1104I CTCTTC 2 cut(s) 446, 729
EarI CTCTTC 2 cut(s) 446, 729
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 722
Eco130I CCWWGG 3 cut(s) 250, 1135, 1385
Eco24I GRGCYC 2 cut(s) 724, 736
Eco32I GATATC 1 cut(s) 343
Eco47III AGCGCT 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 722
Eco72I CACGTG 1 cut(s) 838
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 722
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 1008, 1425
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 3 cut(s) 250, 1135, 1385
EcoT22I ATGCAT 1 cut(s) 535
EcoT38I GRGCYC 2 cut(s) 724, 736
ErhI CCWWGG 3 cut(s) 250, 1135, 1385
FaeI CATG 6 cut(s) 93, 189, 303, 689, 852, 870
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 2 cut(s) 555, 1411
FatI CATG 6 cut(s) 89, 185, 299, 685, 848, 866
FauI CCCGC 1 cut(s) 507
FauNDI CATATG 1 cut(s) 164
FblI GTMKAC 2 cut(s) 772, 1024
Fnu4HI GCNGC 3 cut(s) 297, 306, 826
FokI GGATG 3 cut(s) 542, 1152, 1220
FriOI GRGCYC 2 cut(s) 724, 736
Fsp4HI GCNGC 3 cut(s) 297, 306, 826
GlaI GCGC 1 cut(s) 556
GluI GCNGC 3 cut(s) 297, 306, 826
GsuI CTGGAG 1 cut(s) 1031
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 1 cut(s) 1361
HapII CCGG 3 cut(s) 473, 607, 911
HhaI GCGC 1 cut(s) 557
Hin1II CATG 6 cut(s) 93, 189, 303, 689, 852, 870
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HindIII AAGCTT 2 cut(s) 23, 1171
HinfI GANTC 9 cut(s) 96, 524, 845, 971, 1256, 1268, 1301, 1379, 1399
HpaII CCGG 3 cut(s) 473, 607, 911
HphI GGTGA 2 cut(s) 271, 926
Hpy166II GTNNAC 5 cut(s) 416, 601, 773, 835, 1025
Hpy188I TCNGA 7 cut(s) 63, 313, 529, 1306, 1327, 1442, 1493
Hpy188III TCNNGA 3 cut(s) 151, 968, 1376
Hpy8I GTNNAC 5 cut(s) 416, 601, 773, 835, 1025
Hpy99I CGWCG 1 cut(s) 810
HpyAV CCTTC 3 cut(s) 856, 946, 1143
HpyCH4III ACNGT 4 cut(s) 39, 157, 962, 1192
HpyCH4IV ACGT 3 cut(s) 837, 939, 1312
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 305
HpyF3I CTNAG 4 cut(s) 381, 507, 624, 1356
HpySE526I ACGT 3 cut(s) 837, 939, 1312
Hsp92II CATG 6 cut(s) 93, 189, 303, 689, 852, 870
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 2 cut(s) 58, 919
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 7 cut(s) 679, 719, 739, 1011, 1062, 1202, 1328
Lsp1109I GCAGC 3 cut(s) 292, 308, 812
LweI GCATC 1 cut(s) 520
MaeII ACGT 3 cut(s) 837, 939, 1312
MaeIII GTNAC 9 cut(s) 39, 121, 277, 475, 559, 935, 1121, 1139, 1313
MalI GATC 2 cut(s) 60, 921
MbiI CCGCTC 1 cut(s) 1205
MboI GATC 2 cut(s) 58, 919
MboII GAAGA 5 cut(s) 20, 463, 716, 747, 929
MhlI GDGCHC 4 cut(s) 593, 724, 736, 1411
MluCI AATT 6 cut(s) 82, 212, 391, 692, 703, 1468
MlyI GAGTC 4 cut(s) 854, 980, 1262, 1393
MmeI TCCRAC 1 cut(s) 1350
Mph1103I ATGCAT 1 cut(s) 535
MseI TTAA 1 cut(s) 347
MspCI CTTAAG 1 cut(s) 346
MspI CCGG 3 cut(s) 473, 607, 911
MspR9I CCNGG 5 cut(s) 473, 608, 912, 1010, 1427
Mva1269I GAATGC 1 cut(s) 1065
MvaI CCWGG 2 cut(s) 1010, 1427
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 302, 305
NciI CCSGG 3 cut(s) 473, 608, 912
NdeI CATATG 1 cut(s) 164
NdeII GATC 2 cut(s) 58, 919
NlaIII CATG 6 cut(s) 93, 189, 303, 689, 852, 870
NlaIV GGNNCC 6 cut(s) 247, 675, 735, 1290, 1424, 1486
NmuCI GTSAC 4 cut(s) 39, 277, 559, 935
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 2 cut(s) 303, 689
PaqCI CACCTGC 2 cut(s) 159, 1328
PciI ACATGT 1 cut(s) 685
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PctI GAATGC 1 cut(s) 1065
PfeI GAWTC 5 cut(s) 96, 524, 1256, 1301, 1379
PfoI TCCNGGA 1 cut(s) 1008
PkrI GCNGC 3 cut(s) 298, 307, 827
PleI GAGTC 4 cut(s) 853, 979, 1262, 1393
PmaCI CACGTG 1 cut(s) 838
PmlI CACGTG 1 cut(s) 838
PpsI GAGTC 4 cut(s) 853, 979, 1262, 1393
Ppu21I YACGTR 1 cut(s) 838
PscI ACATGT 1 cut(s) 685
PsiI TTATAA 4 cut(s) 389, 927, 995, 1104
Psp124BI GAGCTC 1 cut(s) 724
Psp6I CCWGG 2 cut(s) 1008, 1425
PspCI CACGTG 1 cut(s) 838
PspGI CCWGG 2 cut(s) 1008, 1425
PspN4I GGNNCC 6 cut(s) 247, 675, 735, 1290, 1424, 1486
RsaI GTAC 7 cut(s) 36, 320, 367, 572, 834, 854, 1238
RsaNI GTAC 7 cut(s) 35, 319, 366, 571, 833, 853, 1237
SacI GAGCTC 1 cut(s) 724
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 3 cut(s) 297, 306, 826
Sau3AI GATC 2 cut(s) 58, 919
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 4 cut(s) 854, 980, 1262, 1393
ScrFI CCNGG 5 cut(s) 473, 608, 912, 1010, 1427
SduI GDGCHC 4 cut(s) 593, 724, 736, 1411
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 759
SmlI CTYRAG 2 cut(s) 136, 346
SmoI CTYRAG 2 cut(s) 136, 346
Sse9I AATT 6 cut(s) 82, 212, 391, 692, 703, 1468
SsiI CCGC 4 cut(s) 204, 500, 1040, 1205
SstI GAGCTC 1 cut(s) 724
StyD4I CCNGG 5 cut(s) 471, 606, 910, 1008, 1425
StyI CCWWGG 3 cut(s) 250, 1135, 1385
TaaI ACNGT 4 cut(s) 39, 157, 962, 1192
TaiI ACGT 3 cut(s) 840, 942, 1315
TaqI TCGA 4 cut(s) 336, 783, 805, 1411
TasI AATT 6 cut(s) 82, 212, 391, 692, 703, 1468
TatI WGTACW 4 cut(s) 318, 365, 570, 832
TfiI GAWTC 5 cut(s) 96, 524, 1256, 1301, 1379
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 2 cut(s) 1195, 1464
TseFI GTSAC 4 cut(s) 39, 277, 559, 935
TseI GCWGC 3 cut(s) 296, 305, 825
Tsp45I GTSAC 4 cut(s) 39, 277, 559, 935
TspDTI ATGAA 6 cut(s) 397, 478, 716, 716, 965, 1101
TspGWI ACGGA 3 cut(s) 586, 732, 1130
TspRI CASTG 2 cut(s) 1195, 1464
Vha464I CTTAAG 1 cut(s) 346
XapI RAATTY 3 cut(s) 212, 391, 703
XceI RCATGY 2 cut(s) 303, 689
XmiI GTMKAC 2 cut(s) 772, 1024
ZrmI AGTACT 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.