Rh6DG486900

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011619
Physical Location & Seq
Reverse (-)
64859712 .. 64860497
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG486900.1

Sequence Viewer

Length: 786 bp
ATGTTGATAGGAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGAAACCAGACCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAACTCATATTCTCTCAAGTCTTTGTTTCAAGACGGTCGCCATATGCAGGTGCGTTTGCAAAGCTTGGCTTTCTATTACTTCCGCCCCCAAATTTGCCCATCTCCACTATTCAAAATCTATCGGCACCCTTGGTTTTTTGAGCCAACGCTTGAATGTCACCTACATAAAAGAAGCATGTGCTGCTTCTGATAAGTACATAGAACTGACTTTCGAGGATATGTTAAGAGAGAGGTTTCCCACTACTTCTATTTATTCTCAGTTTATAAATTCGTGCAATGGTTTCATTTGTTTACAAGGAAATCAAGGAAGGAGTATTATAGATGAGAAGAGCTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTACCTAAGGAAAAGTATATAGAATCGGATGCATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCGAACGAGCACCTCCGTTTACGACCAGGGGGAGAAAGAGGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGCGCAACCTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGCTCCATCGCTTTCAATTTTTTTATCATTCAGGCCAGTGTATACATTCTTTCGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

261

Amino Acids

29.63

Weight (kDa)

9.26

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 1.7e-07 F-box domain
F-box-like PF12937 33 - 69 8.5e-06 F-box-like
FBA_1 PF07734 95 - 243 7.1e-11 F-box associated beta propeller domain
FBA_3 PF08268 115 - 225 1.2e-15 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 122 - 244 7.3e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AarI CACCTGC 1 cut(s) 156
Acc16I TGCGCA 1 cut(s) 675
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 767
AciI CCGC 2 cut(s) 201, 494
AcsI RAATTY 3 cut(s) 209, 385, 697
AfaI GTAC 2 cut(s) 314, 566
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 165, 472, 473
AgsI TTSAA 5 cut(s) 148, 231, 271, 686, 741
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 4 cut(s) 25, 182, 450, 716
AluI AGCT 4 cut(s) 25, 182, 450, 716
Alw21I GWGCWC 2 cut(s) 587, 718
Alw26I GTCTC 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 1 cut(s) 758
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 3 cut(s) 209, 385, 697
AspLEI GCGC 2 cut(s) 551, 676
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 501
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 2 cut(s) 718, 730
Bbv12I GWGCWC 2 cut(s) 587, 718
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 225, 739
BciT130I CCWGG 1 cut(s) 602
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 467, 602
BmiI GGNNCC 3 cut(s) 244, 669, 729
BmrFI CCNGG 2 cut(s) 467, 602
BmsI GCATC 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 247, 601
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 472, 473
Bse1I ACTGG 1 cut(s) 761
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 247, 601
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 3 cut(s) 165, 472, 473
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 389, 609
BseNI ACTGG 1 cut(s) 761
BseRI GAGGAG 1 cut(s) 657
BseXI GCAGC 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 760
BshNI GGYRCC 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 587, 718
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 3 cut(s) 165, 472, 473
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 549
BsnI GGCC 1 cut(s) 760
Bsp1286I GDGCHC 3 cut(s) 587, 718, 730
BspACI CCGC 2 cut(s) 201, 494
BspANI GGCC 1 cut(s) 760
BspCNI CTCAG 2 cut(s) 388, 610
BspLI GGNNCC 3 cut(s) 244, 669, 729
BspMI ACCTGC 1 cut(s) 156
BspQI GCTCTTC 2 cut(s) 440, 723
BspT107I GGYRCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 2 cut(s) 247, 601
BssNAI GTATAC 1 cut(s) 768
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 2 cut(s) 440, 723
BstAPI GCANNNNNTGC 1 cut(s) 299
BstDEI CTNAG 5 cut(s) 44, 115, 375, 501, 618
BstF5I GGATG 1 cut(s) 529
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 2 cut(s) 551, 676
BstMAI GTCTC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 1 cut(s) 602
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 465, 600
BstV1I GCAGC 1 cut(s) 286
BstZ17I GTATAC 1 cut(s) 768
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 1 cut(s) 760
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 768
BveI ACCTGC 1 cut(s) 156
CfoI GCGC 2 cut(s) 551, 676
Csp6I GTAC 2 cut(s) 313, 565
CviAII CATG 2 cut(s) 87, 294
CviQI GTAC 2 cut(s) 313, 565
DdeI CTNAG 5 cut(s) 44, 115, 375, 501, 618
Eam1104I CTCTTC 2 cut(s) 440, 723
EarI CTCTTC 2 cut(s) 440, 723
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 718, 730
Eco47III AGCGCT 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 716
Eco81I CCTNAGG 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 2 cut(s) 718, 730
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 90, 297
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 549
FatI CATG 2 cut(s) 86, 293
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 2 cut(s) 718, 730
Fsp4HI GCNGC 1 cut(s) 300
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 2 cut(s) 550, 675
GluI GCNGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 1 cut(s) 760
HapII CCGG 1 cut(s) 467
HhaI GCGC 2 cut(s) 551, 676
Hin1II CATG 2 cut(s) 90, 297
Hin6I GCGC 2 cut(s) 549, 674
HinP1I GCGC 2 cut(s) 549, 674
HindIII AAGCTT 2 cut(s) 23, 180
HinfI GANTC 2 cut(s) 93, 518
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 3 cut(s) 410, 595, 768
Hpy188I TCNGA 2 cut(s) 307, 523
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 3 cut(s) 410, 595, 768
HpyAV CCTTC 1 cut(s) 420
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 8 cut(s) 73, 90, 165, 177, 393, 462, 527, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 5 cut(s) 44, 115, 375, 501, 618
Hsp92II CATG 2 cut(s) 90, 297
HspAI GCGC 2 cut(s) 549, 674
LguI GCTCTTC 2 cut(s) 440, 723
LmnI GCTCC 3 cut(s) 673, 713, 733
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 514
MaeIII GTNAC 5 cut(s) 39, 118, 274, 469, 553
MboII GAAGA 3 cut(s) 20, 457, 710
MhlI GDGCHC 3 cut(s) 587, 718, 730
MluCI AATT 6 cut(s) 79, 209, 385, 686, 697, 741
MnlI CCTC 5 cut(s) 325, 342, 598, 607, 635
Mph1103I ATGCAT 1 cut(s) 529
MseI TTAA 1 cut(s) 341
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 467, 602
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 1 cut(s) 467
NdeI CATATG 1 cut(s) 161
NlaIII CATG 2 cut(s) 90, 297
NlaIV GGNNCC 3 cut(s) 244, 669, 729
NmuCI GTSAC 3 cut(s) 39, 274, 553
NsbI TGCGCA 1 cut(s) 675
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 297
PaqCI CACCTGC 1 cut(s) 156
PciSI GCTCTTC 2 cut(s) 440, 723
PfeI GAWTC 2 cut(s) 93, 518
PkrI GCNGC 1 cut(s) 301
PsiI TTATAA 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 600
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 3 cut(s) 244, 669, 729
RsaI GTAC 2 cut(s) 314, 566
RsaNI GTAC 2 cut(s) 313, 565
SacI GAGCTC 1 cut(s) 718
SapI GCTCTTC 2 cut(s) 440, 723
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 1 cut(s) 300
ScrFI CCNGG 2 cut(s) 467, 602
SduI GDGCHC 3 cut(s) 587, 718, 730
SfaNI GCATC 1 cut(s) 514
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 6 cut(s) 79, 209, 385, 686, 697, 741
SsiI CCGC 2 cut(s) 201, 494
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 2 cut(s) 465, 600
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 330, 778
TasI AATT 6 cut(s) 79, 209, 385, 686, 697, 741
TatI WGTACW 2 cut(s) 312, 564
TfiI GAWTC 2 cut(s) 93, 518
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 3 cut(s) 39, 274, 553
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 3 cut(s) 39, 274, 553
TspDTI ATGAA 4 cut(s) 391, 472, 710, 710
TspGWI ACGGA 2 cut(s) 580, 726
TspRI CASTG 1 cut(s) 768
XapI RAATTY 3 cut(s) 209, 385, 697
XceI RCATGY 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 767
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.