Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007632.1

Orthogroup ID

OG0011619

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1958

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007632.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1460 bp

atgttgataggaaagaaacgaaagcttcttcgcgtaccgtcactaacaaggaaaccagatcagagacaagaactgcaacctaattttccatgcagattccattcactcccacaagtcttggtaactcttattctctcaagtctttgtttcaagacggtcgccatatgtaggtgcgtttgcaaagcatggctttctattacttccgcccccaaatttgcccatctccactattcaaaatctatcggcacccttggttttttgaaccaagccttgaatgtcacctacataaaagaagcagcatgtgctgcttctgataagtacatagaactgactttcgaggatatcttaagagagaggtttcccagtacttctatttattctcagtttataaattcgtgcaatggtttcatttgtttacaaggaaatcaaagaaggagtattatagatgagaagaggttttatgtgtgcaacccggttacgggcgagttcatcactatcccgctacctaaggaaaagtatatagaatcggatgcatttgtgggacttggttttagcgctgtgaccaatgagtacaaggtgttgcaaacgagcacctccgtttacgaccgggaggagaaaaaggctgagatttatacaatcggtagtagaggagtgtggagaagtattggaaaggctcctgtgcaacatgttgaattacctatgaattcttatttgcacggagctcttcattgggctccatcgctttcggttttttcttctacaggcgagtgtatacattctttcgactttgaaaaagaggagtttcgacgactacccctaccaagctgcgttgtacacgtggaggagacagaggagtcatggtacgaggagaaggcatggaggttgggggtgctacaaggttgtctctttttaggtgtgccgggtgaagatcattataacgaatgtgacgtgtgggttatgaaggattacggtgttcaagagtcttggactaaagtttttgttataaaaaacttgctcctggatacattgtgtagaccatattttgaaccgcttatgtttttgagtaatgggagcattctaatatcattttgtaatgaagttttgatttcttataaccaagaaacggagagttacttgaaaatccaaggttacttgggaaggataactgcttaccatccaagctttgtttccctttgcactgtttcaaatggagcggatgttgaaaggataagagatagtaagatgtatgacaagttgtgtgctgaatcttatgatgactctgctgtttatgaggtggtgccaccccacgattccgaaaaaagtaacacctgctccgaccagtctgcttttgtagagggtctttctaaggccacaaaatcctctctggattccccttggaggattgggactcaatgtgctcgatgtgatgggaacctgggttatgttttcagaggcaaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

487

Amino Acids

55.23

Weight (kDa)

6.44

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309591 RchiOBHm_Chr6g0309611
rosa_laevigata	RLG00000010550
rosa_multiflora	Rmu_sc0007632.1_g000001 Rmu_sc0007632.1_g000003 Rmu_sc0008462.1_g000004
rosa_rugosa	Rorug06G0373000 Rorug06G0373000 Rorug06G0373100
rosa_samantha	Rh6AG486700 Rh6BG496000 Rh6BG496100 Rh6BG496300 Rh6CG500900 Rh6CG501000 Rh6DG486800 Rh6DG486900 Rh6DG487100
rosa_wichuraiana	Rw6G042380 Rw6G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	389, 936, 1004, 1113
AarI	CACCTGC	1 cut(s)	1337
AasI	GACNNNNNNGTC	1 cut(s)	853
Acc36I	ACCTGC	1 cut(s)	1337
AccB1I	GGYRCC	2 cut(s)	245, 1297
AccBSI	CCGCTC	1 cut(s)	1214
AccI	GTMKAC	2 cut(s)	772, 1033
AccII	CGCG	1 cut(s)	33
AciI	CCGC	4 cut(s)	204, 500, 1049, 1214
AcsI	RAATTY	3 cut(s)	212, 391, 703
AcvI	CACGTG	1 cut(s)	838
AfaI	GTAC	6 cut(s)	36, 320, 367, 572, 834, 863
AfeI	AGCGCT	1 cut(s)	556
AfiI	CCNNNNNNNGG	5 cut(s)	168, 478, 479, 1123, 1398
AflII	CTTAAG	1 cut(s)	346
AflIII	ACRYGT	3 cut(s)	685, 835, 948
AjiI	CACGTC	1 cut(s)	949
AjnI	CCWGG	2 cut(s)	1017, 1434
AjuI	GAANNNNNNNTTGG	2 cut(s)	1171, 1203
AluBI	AGCT	4 cut(s)	25, 722, 825, 1182
AluI	AGCT	4 cut(s)	25, 722, 825, 1182
Alw21I	GWGCWC	3 cut(s)	593, 724, 1420
Alw26I	GTCTC	3 cut(s)	58, 839, 908
Aor51HI	AGCGCT	1 cut(s)	556
AoxI	GGCC	1 cut(s)	1368
ApeKI	GCWGC	3 cut(s)	296, 305, 825
ApoI	RAATTY	3 cut(s)	212, 391, 703
AspLEI	GCGC	1 cut(s)	557
AsuC2I	CCSGG	3 cut(s)	473, 608, 921
AsuHPI	GGTGA	2 cut(s)	271, 935
AxyI	CCTNAGG	1 cut(s)	507
BanI	GGYRCC	2 cut(s)	245, 1297
BanII	GRGCYC	2 cut(s)	724, 736
BbrPI	CACGTG	1 cut(s)	838
Bbv12I	GWGCWC	3 cut(s)	593, 724, 1420
BbvI	GCAGC	3 cut(s)	292, 308, 812
BccI	CCATC	4 cut(s)	228, 745, 1182, 1421
BcgI	CGANNNNNNTGC	2 cut(s)	1325, 1359
BciT130I	CCWGG	2 cut(s)	1019, 1436
BciVI	GTATCC	1 cut(s)	1015
BcnI	CCSGG	3 cut(s)	473, 608, 921
BcoDI	GTCTC	3 cut(s)	58, 839, 908
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	1337
BfuI	GTATCC	1 cut(s)	1015
BisI	GCNGC	3 cut(s)	297, 306, 826
BlsI	GCNGC	3 cut(s)	298, 307, 827
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	5 cut(s)	473, 608, 921, 1019, 1436
BmgBI	CACGTC	1 cut(s)	949
BmiI	GGNNCC	5 cut(s)	247, 675, 735, 1299, 1433
BmrFI	CCNGG	5 cut(s)	473, 608, 921, 1019, 1436
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	3 cut(s)	473, 608, 921
BsaAI	YACGTR	1 cut(s)	838
BsaJI	CCNNGG	4 cut(s)	250, 1144, 1394, 1435
BsaXI	ACNNNNNCTCC	6 cut(s)	845, 875, 1203, 1233, 1316, 1346
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 478, 479, 1123, 1398
Bse1I	ACTGG	2 cut(s)	363, 1339
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	1019, 1436
BseDI	CCNNGG	4 cut(s)	250, 1144, 1394, 1435
BseGI	GGATG	3 cut(s)	535, 1174, 1222
BseLI	CCNNNNNNNGG	5 cut(s)	168, 478, 479, 1123, 1398
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	395, 615
BseNI	ACTGG	2 cut(s)	363, 1339
BseRI	GAGGAG	6 cut(s)	626, 663, 812, 857, 866, 881
BseXI	GCAGC	3 cut(s)	292, 308, 812
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	2 cut(s)	159, 607
BshFI	GGCC	1 cut(s)	1370
BshNI	GGYRCC	2 cut(s)	245, 1297
BsiEI	CGRYCG	2 cut(s)	159, 607
BsiHKAI	GWGCWC	3 cut(s)	593, 724, 1420
BsiSI	CCGG	3 cut(s)	473, 607, 920
BslFI	GGGAC	2 cut(s)	555, 1420
BslI	CCNNNNNNNGG	5 cut(s)	168, 478, 479, 1123, 1398
BsmAI	GTCTC	3 cut(s)	58, 839, 908
BsmFI	GGGAC	2 cut(s)	555, 1420
BsmI	GAATGC	1 cut(s)	1074
BsnI	GGCC	1 cut(s)	1370
Bsp1286I	GDGCHC	4 cut(s)	593, 724, 736, 1420
Bsp1407I	TGTACA	1 cut(s)	832
Bsp143I	GATC	2 cut(s)	58, 928
BspACI	CCGC	4 cut(s)	204, 500, 1049, 1214
BspANI	GGCC	1 cut(s)	1370
BspCNI	CTCAG	2 cut(s)	394, 616
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	5 cut(s)	247, 675, 735, 1299, 1433
BspMI	ACCTGC	1 cut(s)	1337
BspQI	GCTCTTC	1 cut(s)	729
BspT107I	GGYRCC	2 cut(s)	245, 1297
BspTI	CTTAAG	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	1214
BsrDI	GCAATG	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	832
BsrI	ACTGG	2 cut(s)	363, 1339
BssECI	CCNNGG	4 cut(s)	250, 1144, 1394, 1435
BssMI	GATC	2 cut(s)	58, 928
BssNAI	GTATAC	1 cut(s)	773
BssT1I	CCWWGG	3 cut(s)	250, 1144, 1394
Bst1107I	GTATAC	1 cut(s)	773
Bst2UI	CCWGG	2 cut(s)	1019, 1436
Bst4CI	ACNGT	4 cut(s)	39, 157, 971, 1201
Bst6I	CTCTTC	2 cut(s)	446, 729
BstAFI	CTTAAG	1 cut(s)	346
BstAPI	GCANNNNNTGC	2 cut(s)	302, 305
BstAUI	TGTACA	1 cut(s)	832
BstBAI	YACGTR	1 cut(s)	838
BstDEI	CTNAG	4 cut(s)	381, 507, 624, 1365
BstF5I	GGATG	3 cut(s)	535, 1174, 1222
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	61, 931
BstMAI	GTCTC	3 cut(s)	58, 839, 908
BstMBI	GATC	2 cut(s)	58, 928
BstMCI	CGRYCG	2 cut(s)	159, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 305
BstNI	CCWGG	2 cut(s)	1019, 1436
BstNSI	RCATGY	2 cut(s)	303, 689
BstSCI	CCNGG	5 cut(s)	471, 606, 919, 1017, 1434
BstSFI	CTRYAG	1 cut(s)	759
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	292, 308, 812
BstZ17I	GTATAC	1 cut(s)	773
Bsu36I	CCTNAGG	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	1 cut(s)	1370
BtgZI	GCGATG	1 cut(s)	723
BtrI	CACGTC	1 cut(s)	949
BtsCI	GGATG	3 cut(s)	535, 1174, 1222
BtsIMutI	CAGTG	1 cut(s)	1197
BveI	ACCTGC	1 cut(s)	1337
CfoI	GCGC	1 cut(s)	557
Csp6I	GTAC	6 cut(s)	35, 319, 366, 571, 833, 862
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	6 cut(s)	90, 186, 300, 686, 858, 876
CviQI	GTAC	6 cut(s)	35, 319, 366, 571, 833, 862
DdeI	CTNAG	4 cut(s)	381, 507, 624, 1365
DpnI	GATC	2 cut(s)	60, 930
DpnII	GATC	2 cut(s)	58, 928
DrdI	GACNNNNNNGTC	1 cut(s)	853
DseDI	GACNNNNNNGTC	1 cut(s)	853
Eam1104I	CTCTTC	2 cut(s)	446, 729
EarI	CTCTTC	2 cut(s)	446, 729
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	722
Eco130I	CCWWGG	3 cut(s)	250, 1144, 1394
Eco24I	GRGCYC	2 cut(s)	724, 736
Eco32I	GATATC	1 cut(s)	343
Eco47III	AGCGCT	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	722
Eco72I	CACGTG	1 cut(s)	838
Eco81I	CCTNAGG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	1017, 1434
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	3 cut(s)	250, 1144, 1394
EcoT22I	ATGCAT	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	724, 736
ErhI	CCWWGG	3 cut(s)	250, 1144, 1394
FaeI	CATG	6 cut(s)	93, 189, 303, 689, 861, 879
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	2 cut(s)	555, 1420
FatI	CATG	6 cut(s)	89, 185, 299, 685, 857, 875
FauI	CCCGC	1 cut(s)	507
FauNDI	CATATG	1 cut(s)	164
FblI	GTMKAC	2 cut(s)	772, 1033
Fnu4HI	GCNGC	3 cut(s)	297, 306, 826
FokI	GGATG	3 cut(s)	542, 1161, 1229
FriOI	GRGCYC	2 cut(s)	724, 736
Fsp4HI	GCNGC	3 cut(s)	297, 306, 826
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	3 cut(s)	297, 306, 826
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	1370
HapII	CCGG	3 cut(s)	473, 607, 920
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	6 cut(s)	93, 189, 303, 689, 861, 879
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HindIII	AAGCTT	2 cut(s)	23, 1180
HinfI	GANTC	9 cut(s)	96, 524, 854, 980, 1265, 1277, 1310, 1388, 1408
HpaII	CCGG	3 cut(s)	473, 607, 920
HphI	GGTGA	2 cut(s)	271, 935
Hpy166II	GTNNAC	5 cut(s)	416, 601, 773, 835, 1034
Hpy188I	TCNGA	6 cut(s)	63, 313, 529, 1315, 1336, 1451
Hpy188III	TCNNGA	3 cut(s)	151, 977, 1385
Hpy8I	GTNNAC	5 cut(s)	416, 601, 773, 835, 1034
Hpy99I	CGWCG	1 cut(s)	810
HpyAV	CCTTC	4 cut(s)	426, 865, 955, 1152
HpyCH4III	ACNGT	4 cut(s)	39, 157, 971, 1201
HpyCH4IV	ACGT	2 cut(s)	837, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 305
HpyF3I	CTNAG	4 cut(s)	381, 507, 624, 1365
HpySE526I	ACGT	2 cut(s)	837, 948
Hsp92II	CATG	6 cut(s)	93, 189, 303, 689, 861, 879
HspAI	GCGC	1 cut(s)	555
Kzo9I	GATC	2 cut(s)	58, 928
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	7 cut(s)	679, 719, 739, 1020, 1071, 1211, 1337
Lsp1109I	GCAGC	3 cut(s)	292, 308, 812
LweI	GCATC	1 cut(s)	520
MaeII	ACGT	2 cut(s)	837, 948
MaeIII	GTNAC	9 cut(s)	39, 121, 277, 475, 559, 944, 1130, 1148, 1322
MalI	GATC	2 cut(s)	60, 930
MbiI	CCGCTC	1 cut(s)	1214
MboI	GATC	2 cut(s)	58, 928
MboII	GAAGA	5 cut(s)	20, 463, 716, 747, 938
MhlI	GDGCHC	4 cut(s)	593, 724, 736, 1420
MluCI	AATT	5 cut(s)	82, 212, 391, 692, 703
MlyI	GAGTC	4 cut(s)	863, 989, 1271, 1402
MmeI	TCCRAC	1 cut(s)	1359
Mph1103I	ATGCAT	1 cut(s)	535
MseI	TTAA	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	346
MspI	CCGG	3 cut(s)	473, 607, 920
MspR9I	CCNGG	5 cut(s)	473, 608, 921, 1019, 1436
Mva1269I	GAATGC	1 cut(s)	1074
MvaI	CCWGG	2 cut(s)	1019, 1436
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	302, 305
NciI	CCSGG	3 cut(s)	473, 608, 921
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	2 cut(s)	58, 928
NlaIII	CATG	6 cut(s)	93, 189, 303, 689, 861, 879
NlaIV	GGNNCC	5 cut(s)	247, 675, 735, 1299, 1433
NmuCI	GTSAC	4 cut(s)	39, 277, 559, 944
NsiI	ATGCAT	1 cut(s)	535
NspI	RCATGY	2 cut(s)	303, 689
PaqCI	CACCTGC	1 cut(s)	1337
PciI	ACATGT	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	945
PctI	GAATGC	1 cut(s)	1074
PfeI	GAWTC	5 cut(s)	96, 524, 1265, 1310, 1388
PfoI	TCCNGGA	1 cut(s)	1017
PkrI	GCNGC	3 cut(s)	298, 307, 827
PleI	GAGTC	4 cut(s)	862, 988, 1271, 1402
PmaCI	CACGTG	1 cut(s)	838
PmlI	CACGTG	1 cut(s)	838
PpsI	GAGTC	4 cut(s)	862, 988, 1271, 1402
Ppu21I	YACGTR	1 cut(s)	838
PscI	ACATGT	1 cut(s)	685
PsiI	TTATAA	4 cut(s)	389, 936, 1004, 1113
Psp124BI	GAGCTC	1 cut(s)	724
Psp6I	CCWGG	2 cut(s)	1017, 1434
PspCI	CACGTG	1 cut(s)	838
PspGI	CCWGG	2 cut(s)	1017, 1434
PspN4I	GGNNCC	5 cut(s)	247, 675, 735, 1299, 1433
RsaI	GTAC	6 cut(s)	36, 320, 367, 572, 834, 863
RsaNI	GTAC	6 cut(s)	35, 319, 366, 571, 833, 862
SacI	GAGCTC	1 cut(s)	724
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	3 cut(s)	297, 306, 826
Sau3AI	GATC	2 cut(s)	58, 928
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	4 cut(s)	863, 989, 1271, 1402
ScrFI	CCNGG	5 cut(s)	473, 608, 921, 1019, 1436
SduI	GDGCHC	4 cut(s)	593, 724, 736, 1420
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	136, 346
SmoI	CTYRAG	2 cut(s)	136, 346
Sse9I	AATT	5 cut(s)	82, 212, 391, 692, 703
SsiI	CCGC	4 cut(s)	204, 500, 1049, 1214
SstI	GAGCTC	1 cut(s)	724
StyD4I	CCNGG	5 cut(s)	471, 606, 919, 1017, 1434
StyI	CCWWGG	3 cut(s)	250, 1144, 1394
TaaI	ACNGT	4 cut(s)	39, 157, 971, 1201
TaiI	ACGT	2 cut(s)	840, 951
TaqI	TCGA	4 cut(s)	336, 783, 805, 1420
TasI	AATT	5 cut(s)	82, 212, 391, 692, 703
TatI	WGTACW	4 cut(s)	318, 365, 570, 832
TfiI	GAWTC	5 cut(s)	96, 524, 1265, 1310, 1388
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	1204
TseFI	GTSAC	4 cut(s)	39, 277, 559, 944
TseI	GCWGC	3 cut(s)	296, 305, 825
Tsp45I	GTSAC	4 cut(s)	39, 277, 559, 944
TspDTI	ATGAA	6 cut(s)	397, 478, 716, 716, 974, 1110
TspGWI	ACGGA	3 cut(s)	586, 732, 1139
TspRI	CASTG	1 cut(s)	1204
Vha464I	CTTAAG	1 cut(s)	346
XapI	RAATTY	3 cut(s)	212, 391, 703
XceI	RCATGY	2 cut(s)	303, 689
XmiI	GTMKAC	2 cut(s)	772, 1033
ZrmI	AGTACT	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.