Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011619

Physical Location & Seq

Genomic Coordinates Reverse (-)

64867072 .. 64869048

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG487100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGCTGAGAGAAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGGAACCAGATCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAGTAACTCATATTCTCTCAAGTCTTTGTTTCAAGACGGTCGCCATATGCAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCGATTTTGCTCATCTCCACTATTCAAAATCTATCGACAACCTTGGTTTTTTGAGCCAAGCAAACTGGACTATCACCTACATGAAAGAAGAATGTGCTACTTCTGATAAGTACATAGAACTGACTTTCGAGGATATGTTAAGAGAGAGGTTTCCCACTTCTTTTTATTTTCGGTTTATAAATTCGTGCAATGGTTTCATTTGTTTAGAAGGAAATCAAGGAATGAGAATTAGAGATGAGGAGAGCTTGTATGTGTGCAATCCGGTTACGGGCGAGTTTATCACTATCCCCCTACCTAAACAAAAGTGTAGAGGCTCGTATGAATTTGTGGGACTTAGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAAACGAGCACCTCCGTTTACGACCAGGGGGAGAAGGAGGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGTGCAACCTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGTTCCATCGCTTTCAATTTTTTCTCCTACAGGCGAGTGTATACATTCTTTCGACTTTGAAAAAGAAGAGTTTCGACGACTACCCCTACCAAGCTGCATTGTACACTTGGACGAGGCATGGAGGTTGGGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCGAGGTGAAGAAAATTTTAACGAATGTGACGTGTGGGTTATGAAGGATTACGGTATCCAAGAGTCTTGGACTAAAGTTTTTGTTATAAAAAACTTGCAGGTTTATCCGCCAGCACCAGAGTACTATAGACCATATTATGAACCAGTTATGTTTTTGAGTGATGGGAGCATTCTAATATCATATTGTAATGAAGTTTTCATTTCTTATAACCAAGAAATGGATAGTTACGTGAAAATCGAAGGTTATTCGGGAAGGATAATTGCTTACCATCCAAGCTTTGTTTCCCTTTGCACTTTTTCAAATGGAGCGAAAGTTGAAAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATCTTATGATGACTATGCTGGTTATGAGGTGGTGCCATCCCAAGATTCCGAAAAAAGTAACACCTGCTCCGACCAGTCTGCTCTTGTAGAGGGTCTTTCAAAGGCCACAAAATCCTCTCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGCGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTTGCAGTGTGTGAAAATTGCTTCGACAAAGGTTCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

494

Amino Acids

56.48

Weight (kDa)

5.73

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	93 - 370	1.4e-22	F-box associated beta propeller domain
FBA_3	PF08268	116 - 326	8.3e-22	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	128 - 274	4.4e-08	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309591 RchiOBHm_Chr6g0309611
rosa_laevigata	RLG00000010550
rosa_multiflora	Rmu_sc0007632.1_g000001 Rmu_sc0007632.1_g000003 Rmu_sc0008462.1_g000004
rosa_rugosa	Rorug06G0373000 Rorug06G0373000 Rorug06G0373100
rosa_samantha	Rh6AG486700 Rh6BG496000 Rh6BG496100 Rh6BG496300 Rh6CG500900 Rh6CG501000 Rh6DG486800 Rh6DG486900 Rh6DG487100
rosa_wichuraiana	Rw6G042380 Rw6G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	386, 974, 1095
AarI	CACCTGC	2 cut(s)	159, 1319
Acc36I	ACCTGC	3 cut(s)	159, 976, 1319
AccB1I	GGYRCC	1 cut(s)	1279
AccB7I	CCANNNNNTGG	1 cut(s)	1105
AccI	GTMKAC	1 cut(s)	769
AciI	CCGC	2 cut(s)	204, 995
AcsI	RAATTY	4 cut(s)	388, 530, 700, 901
AfaI	GTAC	4 cut(s)	320, 569, 831, 1010
AfeI	AGCGCT	1 cut(s)	553
AfiI	CCNNNNNNNGG	4 cut(s)	168, 476, 1105, 1380
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	8 cut(s)	151, 234, 689, 744, 788, 1188, 1205, 1347
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	2 cut(s)	603, 1416
AjuI	GAANNNNNNNTTGG	2 cut(s)	1153, 1185
AluBI	AGCT	5 cut(s)	25, 453, 719, 822, 1164
AluI	AGCT	5 cut(s)	25, 453, 719, 822, 1164
Alw21I	GWGCWC	3 cut(s)	590, 721, 1402
Alw26I	GTCTC	2 cut(s)	55, 878
Aor51HI	AGCGCT	1 cut(s)	553
AoxI	GGCC	1 cut(s)	1350
ApeKI	GCWGC	1 cut(s)	822
ApoI	RAATTY	4 cut(s)	388, 530, 700, 901
Asp700I	GAANNNNTTC	1 cut(s)	798
AspLEI	GCGC	1 cut(s)	554
AsuHPI	GGTGA	2 cut(s)	274, 905
BanI	GGYRCC	1 cut(s)	1279
BanII	GRGCYC	1 cut(s)	721
Bbv12I	GWGCWC	3 cut(s)	590, 721, 1402
BbvI	GCAGC	1 cut(s)	809
BccI	CCATC	5 cut(s)	742, 1043, 1164, 1291, 1403
BcgI	CGANNNNNNTGC	2 cut(s)	1307, 1341
BciT130I	CCWGG	2 cut(s)	605, 1418
BciVI	GTATCC	1 cut(s)	953
BcoDI	GTCTC	2 cut(s)	55, 878
BfmI	CTRYAG	2 cut(s)	756, 1012
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	3 cut(s)	159, 976, 1319
BfuI	GTATCC	1 cut(s)	953
BisI	GCNGC	1 cut(s)	823
BlsI	GCNGC	1 cut(s)	824
BmcAI	AGTACT	1 cut(s)	1010
Bme1390I	CCNGG	2 cut(s)	605, 1418
BmgBI	CACGTC	1 cut(s)	919
BmiI	GGNNCC	6 cut(s)	51, 672, 732, 1281, 1415, 1477
BmrFI	CCNGG	2 cut(s)	605, 1418
BmsI	GCATC	1 cut(s)	1394
BpuEI	CTTGAG	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	1117
BsaJI	CCNNGG	4 cut(s)	250, 604, 1376, 1417
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	6 cut(s)	440, 470, 1185, 1215, 1298, 1328
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 476, 1105, 1380
Bse1I	ACTGG	3 cut(s)	278, 1031, 1321
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	605, 1418
BseDI	CCNNGG	4 cut(s)	250, 604, 1376, 1417
BseGI	GGATG	2 cut(s)	1156, 1283
BseLI	CCNNNNNNNGG	4 cut(s)	168, 476, 1105, 1380
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	3 cut(s)	278, 1031, 1321
BseRI	GAGGAG	2 cut(s)	461, 660
BseXI	GCAGC	1 cut(s)	809
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	1352
BshNI	GGYRCC	1 cut(s)	1279
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	3 cut(s)	590, 721, 1402
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	2 cut(s)	552, 1402
BslI	CCNNNNNNNGG	4 cut(s)	168, 476, 1105, 1380
BsmAI	GTCTC	2 cut(s)	55, 878
BsmFI	GGGAC	2 cut(s)	552, 1402
BsmI	GAATGC	1 cut(s)	1056
BsnI	GGCC	1 cut(s)	1352
Bsp1286I	GDGCHC	3 cut(s)	590, 721, 1402
Bsp1407I	TGTACA	1 cut(s)	829
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	2 cut(s)	204, 995
BspANI	GGCC	1 cut(s)	1352
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	6 cut(s)	51, 672, 732, 1281, 1415, 1477
BspMI	ACCTGC	3 cut(s)	159, 976, 1319
BspQI	GCTCTTC	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	1279
BsrDI	GCAATG	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	278, 1031, 1321
BssECI	CCNNGG	4 cut(s)	250, 604, 1376, 1417
BssMI	GATC	1 cut(s)	55
BssNAI	GTATAC	1 cut(s)	770
BssT1I	CCWWGG	2 cut(s)	250, 1376
Bst1107I	GTATAC	1 cut(s)	770
Bst2UI	CCWGG	2 cut(s)	605, 1418
Bst4CI	ACNGT	2 cut(s)	157, 941
Bst6I	CTCTTC	2 cut(s)	726, 789
BstAUI	TGTACA	1 cut(s)	829
BstBAI	YACGTR	1 cut(s)	1117
BstC8I	GCNNGC	1 cut(s)	999
BstDEI	CTNAG	5 cut(s)	5, 44, 115, 542, 621
BstF5I	GGATG	2 cut(s)	1156, 1283
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	55, 878
BstMBI	GATC	1 cut(s)	55
BstMCI	CGRYCG	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	605, 1418
BstSCI	CCNGG	2 cut(s)	603, 1416
BstSFI	CTRYAG	2 cut(s)	756, 1012
BstV1I	GCAGC	1 cut(s)	809
BstZ17I	GTATAC	1 cut(s)	770
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	1 cut(s)	1352
BtgZI	GCGATG	2 cut(s)	720, 1422
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	2 cut(s)	1156, 1283
BtsI	GCAGTG	1 cut(s)	1455
BtsIMutI	CAGTG	1 cut(s)	1455
BveI	ACCTGC	3 cut(s)	159, 976, 1319
Cac8I	GCNNGC	1 cut(s)	999
CfoI	GCGC	1 cut(s)	554
Csp6I	GTAC	4 cut(s)	319, 568, 830, 1009
CviAII	CATG	4 cut(s)	87, 186, 289, 846
CviQI	GTAC	4 cut(s)	319, 568, 830, 1009
DdeI	CTNAG	5 cut(s)	5, 44, 115, 542, 621
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	726, 789
EarI	CTCTTC	2 cut(s)	726, 789
EciI	GGCGGA	2 cut(s)	193, 984
Ecl136II	GAGCTC	1 cut(s)	719
Eco130I	CCWWGG	2 cut(s)	250, 1376
Eco24I	GRGCYC	1 cut(s)	721
Eco47III	AGCGCT	1 cut(s)	553
Eco53kI	GAGCTC	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	603, 1416
EcoT14I	CCWWGG	2 cut(s)	250, 1376
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	2 cut(s)	250, 1376
FaeI	CATG	4 cut(s)	90, 189, 292, 849
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	2 cut(s)	552, 1402
FatI	CATG	4 cut(s)	86, 185, 288, 845
FauNDI	CATATG	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	769
Fnu4HI	GCNGC	1 cut(s)	823
FokI	GGATG	2 cut(s)	1143, 1270
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	1 cut(s)	823
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	1 cut(s)	823
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	1352
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	90, 189, 292, 849
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HindIII	AAGCTT	2 cut(s)	23, 1162
HinfI	GANTC	6 cut(s)	93, 950, 1247, 1292, 1370, 1390
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	274, 905
Hpy166II	GTNNAC	3 cut(s)	598, 770, 832
Hpy188I	TCNGA	6 cut(s)	60, 313, 1297, 1318, 1433, 1484
Hpy188III	TCNNGA	3 cut(s)	151, 1137, 1367
Hpy8I	GTNNAC	3 cut(s)	598, 770, 832
Hpy99I	CGWCG	1 cut(s)	807
HpyAV	CCTTC	5 cut(s)	410, 607, 925, 1121, 1134
HpyCH4III	ACNGT	2 cut(s)	157, 941
HpyCH4IV	ACGT	2 cut(s)	918, 1116
HpyF3I	CTNAG	5 cut(s)	5, 44, 115, 542, 621
HpySE526I	ACGT	2 cut(s)	918, 1116
Hsp92II	CATG	4 cut(s)	90, 189, 292, 849
HspAI	GCGC	1 cut(s)	552
Kzo9I	GATC	1 cut(s)	55
LguI	GCTCTTC	1 cut(s)	726
LmnI	GCTCC	5 cut(s)	676, 716, 1053, 1193, 1319
Lsp1109I	GCAGC	1 cut(s)	809
LweI	GCATC	1 cut(s)	1394
MaeII	ACGT	2 cut(s)	918, 1116
MaeIII	GTNAC	7 cut(s)	39, 121, 472, 556, 914, 1112, 1304
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	5 cut(s)	20, 308, 713, 806, 908
MhlI	GDGCHC	3 cut(s)	590, 721, 1402
MlyI	GAGTC	2 cut(s)	959, 1384
MmeI	TCCRAC	1 cut(s)	1341
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	2 cut(s)	347, 906
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	605, 1418
Mva1269I	GAATGC	1 cut(s)	1056
MvaI	CCWGG	2 cut(s)	605, 1418
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	4 cut(s)	90, 189, 292, 849
NlaIV	GGNNCC	6 cut(s)	51, 672, 732, 1281, 1415, 1477
NmuCI	GTSAC	3 cut(s)	39, 556, 914
PaqCI	CACCTGC	2 cut(s)	159, 1319
PciSI	GCTCTTC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	2 cut(s)	915, 1122
PctI	GAATGC	1 cut(s)	1056
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	4 cut(s)	93, 1247, 1292, 1370
PflMI	CCANNNNNTGG	1 cut(s)	1105
PkrI	GCNGC	1 cut(s)	824
PleI	GAGTC	2 cut(s)	958, 1384
PpsI	GAGTC	2 cut(s)	958, 1384
Ppu21I	YACGTR	1 cut(s)	1117
PsiI	TTATAA	3 cut(s)	386, 974, 1095
Psp124BI	GAGCTC	1 cut(s)	721
Psp6I	CCWGG	2 cut(s)	603, 1416
PspGI	CCWGG	2 cut(s)	603, 1416
PspN4I	GGNNCC	6 cut(s)	51, 672, 732, 1281, 1415, 1477
RsaI	GTAC	4 cut(s)	320, 569, 831, 1010
RsaNI	GTAC	4 cut(s)	319, 568, 830, 1009
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	721
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	2 cut(s)	347, 906
SatI	GCNGC	1 cut(s)	823
Sau3AI	GATC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	1010
SchI	GAGTC	2 cut(s)	959, 1384
ScrFI	CCNGG	2 cut(s)	605, 1418
SduI	GDGCHC	3 cut(s)	590, 721, 1402
SfaNI	GCATC	1 cut(s)	1394
SfcI	CTRYAG	2 cut(s)	756, 1012
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SsiI	CCGC	2 cut(s)	204, 995
SstI	GAGCTC	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	603, 1416
StyI	CCWWGG	2 cut(s)	250, 1376
TaaI	ACNGT	2 cut(s)	157, 941
TaiI	ACGT	2 cut(s)	921, 1119
TaqI	TCGA	7 cut(s)	243, 336, 780, 802, 1125, 1402, 1467
TatI	WGTACW	4 cut(s)	318, 567, 829, 1008
TfiI	GAWTC	4 cut(s)	93, 1247, 1292, 1370
Tru1I	TTAA	2 cut(s)	347, 906
Tru9I	TTAA	2 cut(s)	347, 906
TscAI	CASTG	1 cut(s)	1455
TseFI	GTSAC	3 cut(s)	39, 556, 914
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	3 cut(s)	39, 556, 914
TspDTI	ATGAA	9 cut(s)	305, 394, 543, 713, 713, 944, 1041, 1075, 1092
TspGWI	ACGGA	2 cut(s)	583, 729
TspRI	CASTG	1 cut(s)	1455
Van91I	CCANNNNNTGG	1 cut(s)	1105
XapI	RAATTY	4 cut(s)	388, 530, 700, 901
XmiI	GTMKAC	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	798
ZrmI	AGTACT	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.