RchiOBHm_Chr6g0309611

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011619
Physical Location & Seq
Reverse (-)
67231034 .. 67231939
906 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27842

Sequence Viewer

Length: 906 bp
ATGCTGAGAGAAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGAAACCAGATCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAACTGACATTCTTTCAAGTCTCTGTTTCAAGACGGTCGCCATATGCAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCAATTTTGCTCATCTCCACTATTCAAAATCTATCGACAACCTTGGTTTTTTTAGCATAGCAAACCAGACTATCACCTACATGAAAGAAGAATGTGCTACTTCTGATAAGTACATAGAACTGACTTTCGAGCATATGTTAAGAGAGAGGTTTCCTGCTTCTTTATATTTTCAGTTTATAAATTCGTGCAATGGTTTCATTTGTTTAGAAGGAAATCAAGGAAGGAGTATTATAGATGAGAAGAGCTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTAGCTAAGGAAAAGTATATAGAGAGGGATGCATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAAACGAGCACCTCCGTTTACGACCAGGGGGAGAAGGAAGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGTGCAACGTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGCTCCATCACTTTCGGTTTTTTCTCCTACAGGCGAGTGTATACATTCTTTCGACTTTGAAAAAGAAGAGTTTCGACGACTACCCCTACCAAGCTGCGTTGTACACGTGGAGGAGTCATGGTACAAGGAGAAGGCATGGAGGTTGGGGGTGCTACAAGAGTACAAGGTTGTCTCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

301

Amino Acids

34.66

Weight (kDa)

8.23

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 6.4e-07 F-box domain
FBA_3 PF08268 82 - 275 5.8e-20 F-box associated beta propeller domain
FBA_1 PF07734 86 - 277 1.6e-17 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 126 - 273 2.2e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 766
AciI CCGC 2 cut(s) 201, 494
AcsI RAATTY 2 cut(s) 385, 697
AcvI CACGTG 1 cut(s) 832
AfaI GTAC 5 cut(s) 317, 566, 828, 848, 887
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 165, 472, 473
AflIII ACRYGT 2 cut(s) 679, 829
AgsI TTSAA 5 cut(s) 135, 148, 231, 686, 785
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 6 cut(s) 25, 450, 500, 617, 716, 819
AluI AGCT 6 cut(s) 25, 450, 500, 617, 716, 819
Alw21I GWGCWC 2 cut(s) 587, 718
Alw26I GTCTC 3 cut(s) 55, 143, 901
Aor51HI AGCGCT 1 cut(s) 550
ApeKI GCWGC 1 cut(s) 819
ApoI RAATTY 2 cut(s) 385, 697
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 551
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 271
AsuNHI GCTAGC 1 cut(s) 496
BanII GRGCYC 2 cut(s) 718, 730
BbrPI CACGTG 1 cut(s) 832
Bbv12I GWGCWC 2 cut(s) 587, 718
BbvI GCAGC 1 cut(s) 806
BccI CCATC 1 cut(s) 739
BciT130I CCWGG 1 cut(s) 602
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 3 cut(s) 55, 143, 901
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 1 cut(s) 820
BlsI GCNGC 1 cut(s) 821
Bme1390I CCNGG 2 cut(s) 467, 602
BmiI GGNNCC 2 cut(s) 669, 729
BmrFI CCNGG 2 cut(s) 467, 602
BmsI GCATC 1 cut(s) 514
BmtI GCTAGC 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 467
BsaAI YACGTR 1 cut(s) 832
BsaJI CCNNGG 2 cut(s) 247, 601
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 472, 473
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 247, 601
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 3 cut(s) 165, 472, 473
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 609
BseRI GAGGAG 2 cut(s) 657, 851
BseXI GCAGC 1 cut(s) 806
Bsh1285I CGRYCG 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 587, 718
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 3 cut(s) 165, 472, 473
BsmAI GTCTC 3 cut(s) 55, 143, 901
BsmFI GGGAC 1 cut(s) 549
Bsp1286I GDGCHC 3 cut(s) 587, 718, 730
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 2 cut(s) 201, 494
BspCNI CTCAG 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 669, 729
BspMI ACCTGC 1 cut(s) 156
BspOI GCTAGC 1 cut(s) 500
BspQI GCTCTTC 2 cut(s) 440, 723
BsrDI GCAATG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 826
BssECI CCNNGG 2 cut(s) 247, 601
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 767
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 767
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 3 cut(s) 440, 723, 786
BstAUI TGTACA 1 cut(s) 826
BstBAI YACGTR 1 cut(s) 832
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 5 cut(s) 5, 44, 115, 501, 618
BstF5I GGATG 1 cut(s) 529
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 3 cut(s) 55, 143, 901
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 156
BstNI CCWGG 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 465, 600
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 1 cut(s) 806
BstZ17I GTATAC 1 cut(s) 767
BtsCI GGATG 1 cut(s) 529
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 1 cut(s) 551
Csp6I GTAC 5 cut(s) 316, 565, 827, 847, 886
CviAII CATG 5 cut(s) 87, 183, 286, 843, 861
CviJI RGCY 9 cut(s) 25, 187, 450, 500, 617, 668, 716, 728, 819
CviKI_1 RGCY 9 cut(s) 25, 187, 450, 500, 617, 668, 716, 728, 819
CviQI GTAC 5 cut(s) 316, 565, 827, 847, 886
DdeI CTNAG 5 cut(s) 5, 44, 115, 501, 618
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 440, 723, 786
EarI CTCTTC 3 cut(s) 440, 723, 786
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 718, 730
Eco47III AGCGCT 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 716
Eco72I CACGTG 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 2 cut(s) 718, 730
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 5 cut(s) 90, 186, 289, 846, 864
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 549
FatI CATG 5 cut(s) 86, 182, 285, 842, 860
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 2 cut(s) 161, 339
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 1 cut(s) 820
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 2 cut(s) 718, 730
Fsp4HI GCNGC 1 cut(s) 820
FspBI CTAG 1 cut(s) 497
GlaI GCGC 1 cut(s) 550
GluI GCNGC 1 cut(s) 820
HaeII RGCGCY 1 cut(s) 552
HapII CCGG 1 cut(s) 467
HhaI GCGC 1 cut(s) 551
Hin1II CATG 5 cut(s) 90, 186, 289, 846, 864
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 93, 839
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 3 cut(s) 595, 767, 829
Hpy188I TCNGA 2 cut(s) 60, 310
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 3 cut(s) 595, 767, 829
Hpy99I CGWCG 1 cut(s) 804
HpyAV CCTTC 4 cut(s) 407, 420, 604, 850
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 679, 831
HpyF3I CTNAG 5 cut(s) 5, 44, 115, 501, 618
HpySE526I ACGT 2 cut(s) 679, 831
Hsp92II CATG 5 cut(s) 90, 186, 289, 846, 864
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 2 cut(s) 440, 723
LmnI GCTCC 3 cut(s) 673, 713, 733
LpnPI CCDG 9 cut(s) 66, 151, 284, 372, 480, 587, 614, 684, 741
Lsp1109I GCAGC 1 cut(s) 806
LweI GCATC 1 cut(s) 514
MaeI CTAG 1 cut(s) 497
MaeII ACGT 2 cut(s) 679, 831
MaeIII GTNAC 4 cut(s) 39, 118, 469, 553
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 5 cut(s) 20, 305, 457, 710, 803
MhlI GDGCHC 3 cut(s) 587, 718, 730
MluCI AATT 5 cut(s) 79, 208, 385, 686, 697
MlyI GAGTC 1 cut(s) 848
MnlI CCTC 6 cut(s) 345, 513, 598, 635, 829, 858
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 467, 602
MvaI CCWGG 1 cut(s) 602
NciI CCSGG 1 cut(s) 467
NdeI CATATG 2 cut(s) 161, 339
NdeII GATC 1 cut(s) 55
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 5 cut(s) 90, 186, 289, 846, 864
NlaIV GGNNCC 2 cut(s) 669, 729
NmuCI GTSAC 2 cut(s) 39, 553
NsiI ATGCAT 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 156
PciSI GCTCTTC 2 cut(s) 440, 723
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 821
PleI GAGTC 1 cut(s) 847
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
PpsI GAGTC 1 cut(s) 847
Ppu21I YACGTR 1 cut(s) 832
PsiI TTATAA 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 600
PspCI CACGTG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 2 cut(s) 669, 729
RsaI GTAC 5 cut(s) 317, 566, 828, 848, 887
RsaNI GTAC 5 cut(s) 316, 565, 827, 847, 886
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 718
SapI GCTCTTC 2 cut(s) 440, 723
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 820
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 2 cut(s) 467, 602
SduI GDGCHC 3 cut(s) 587, 718, 730
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 753
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 5 cut(s) 79, 208, 385, 686, 697
SsiI CCGC 2 cut(s) 201, 494
SspMI CTAG 1 cut(s) 497
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 2 cut(s) 465, 600
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 2 cut(s) 682, 834
TaqI TCGA 4 cut(s) 240, 333, 777, 799
TasI AATT 5 cut(s) 79, 208, 385, 686, 697
TatI WGTACW 4 cut(s) 315, 564, 826, 885
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseFI GTSAC 2 cut(s) 39, 553
TseI GCWGC 1 cut(s) 819
Tsp45I GTSAC 2 cut(s) 39, 553
TspDTI ATGAA 5 cut(s) 302, 391, 472, 710, 710
TspGWI ACGGA 2 cut(s) 580, 726
XapI RAATTY 2 cut(s) 385, 697
XmiI GTMKAC 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 1 cut(s) 497
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.