Rh6BG496100

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011619
Physical Location & Seq
Reverse (-)
69698093 .. 69699185
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG496100.1

Sequence Viewer

Length: 987 bp
ATGTTGATAGGAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGAAACCAGATCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAACTCATATTCTCTCAAGTCTGTGTTTCAAGACGGTCGCCGTATGCAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCAAATTTGCCCATCTCCACTATTCAAAATCTATCGGCACCCTTGGTTTTTTGAGCCAACGCTTGAATGTCACCTACATAAAAGAAGCATGTGCTGCTTCTGATAAGTACATAGAACTGACTTTCGAGGATATGTTAAGAGAGAGGTTTCCCACTACTTCTTTTTATTCTCAGTTTATAAATTCGTGCAATGGTTTCATTTGTTTACAAGGAAATCAAAGGAGTATTATAGATGAGAAGAGCTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTACCTAAGGAAAAGTATATAGAATCGGATGCATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCGAACGAGCACCTCCGTTTACGACCAGGGGGAGAAAGAGGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATCGGAAAGGCTCCTGCGCAACCTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGCTCCATCGCTTTCAATTTTTTATCATTCAGGCCAGTGTATACATTCTTTCGACTTTGAAAAAGAAGAGTTTCGACGACTACCCCTACCAAGCTGCCTTGTACACGTGGAGGAGGAGGCATGGTACGGGGCGAAGGCATGGAGGTTAGGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCCGGGTGAAGATGATTTTAACGAATGTGCAGACGTGTGGGTTATGAAGGATTACGGTGTTCAAGAGTCTTGGACTAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

328

Amino Acids

37.38

Weight (kDa)

7.9

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 1.8e-07 F-box domain
F-box-like PF12937 33 - 69 8.1e-06 F-box-like
FBA_1 PF07734 101 - 328 2e-19 F-box associated beta propeller domain
FBA_3 PF08268 116 - 327 9.9e-22 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 120 - 272 6.6e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AarI CACCTGC 1 cut(s) 156
Acc16I TGCGCA 1 cut(s) 672
Acc36I ACCTGC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 763
AciI CCGC 2 cut(s) 201, 491
AcsI RAATTY 4 cut(s) 209, 385, 694, 980
AcvI CACGTG 1 cut(s) 829
AfaI GTAC 4 cut(s) 314, 563, 825, 848
AfeI AGCGCT 1 cut(s) 547
AfiI CCNNNNNNNGG 3 cut(s) 165, 469, 470
AflIII ACRYGT 2 cut(s) 826, 936
AgsI TTSAA 7 cut(s) 148, 231, 271, 683, 738, 782, 965
AjiI CACGTC 1 cut(s) 937
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 4 cut(s) 25, 447, 713, 816
AluI AGCT 4 cut(s) 25, 447, 713, 816
Alw21I GWGCWC 2 cut(s) 584, 715
Alw26I GTCTC 2 cut(s) 55, 893
Aor51HI AGCGCT 1 cut(s) 547
AoxI GGCC 1 cut(s) 754
ApeKI GCWGC 2 cut(s) 299, 816
ApoI RAATTY 4 cut(s) 209, 385, 694, 980
Asp700I GAANNNNTTC 1 cut(s) 792
AspLEI GCGC 2 cut(s) 548, 673
AsuC2I CCSGG 2 cut(s) 464, 906
AsuHPI GGTGA 2 cut(s) 268, 920
AxyI CCTNAGG 1 cut(s) 498
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 2 cut(s) 715, 727
BbrPI CACGTG 1 cut(s) 829
Bbv12I GWGCWC 2 cut(s) 584, 715
BbvI GCAGC 2 cut(s) 286, 803
BccI CCATC 2 cut(s) 225, 736
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 599
BcnI CCSGG 2 cut(s) 464, 906
BcoDI GTCTC 2 cut(s) 55, 893
BfoI RGCGCY 1 cut(s) 549
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 2 cut(s) 300, 817
BlsI GCNGC 2 cut(s) 301, 818
Bme1390I CCNGG 3 cut(s) 464, 599, 906
BmgBI CACGTC 1 cut(s) 937
BmiI GGNNCC 3 cut(s) 244, 666, 726
BmrFI CCNGG 3 cut(s) 464, 599, 906
BmsI GCATC 1 cut(s) 511
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 2 cut(s) 464, 906
BsaAI YACGTR 1 cut(s) 829
BsaJI CCNNGG 2 cut(s) 247, 598
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 469, 470
Bse1I ACTGG 1 cut(s) 757
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 247, 598
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 3 cut(s) 165, 469, 470
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 389, 606
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 3 cut(s) 654, 848, 851
BseXI GCAGC 2 cut(s) 286, 803
BsgI GTGCAG 1 cut(s) 951
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 756
BshNI GGYRCC 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 584, 715
BsiSI CCGG 2 cut(s) 464, 905
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 165, 469, 470
BsmAI GTCTC 2 cut(s) 55, 893
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 1 cut(s) 756
Bsp1286I GDGCHC 3 cut(s) 584, 715, 727
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 2 cut(s) 201, 491
BspANI GGCC 1 cut(s) 756
BspCNI CTCAG 2 cut(s) 388, 607
BspLI GGNNCC 3 cut(s) 244, 666, 726
BspMI ACCTGC 1 cut(s) 156
BspQI GCTCTTC 2 cut(s) 437, 720
BspT107I GGYRCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 1 cut(s) 757
BssECI CCNNGG 2 cut(s) 247, 598
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 2 cut(s) 154, 959
Bst6I CTCTTC 3 cut(s) 437, 720, 783
BstAPI GCANNNNNTGC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 823
BstBAI YACGTR 1 cut(s) 829
BstDEI CTNAG 5 cut(s) 44, 115, 375, 498, 615
BstF5I GGATG 1 cut(s) 526
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 2 cut(s) 548, 673
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 55, 893
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 3 cut(s) 462, 597, 904
BstV1I GCAGC 2 cut(s) 286, 803
BstZ17I GTATAC 1 cut(s) 764
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 1 cut(s) 756
BtgZI GCGATG 1 cut(s) 714
BtrI CACGTC 1 cut(s) 937
BtsCI GGATG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 764
BveI ACCTGC 1 cut(s) 156
CfoI GCGC 2 cut(s) 548, 673
Csp6I GTAC 4 cut(s) 313, 562, 824, 847
CviAII CATG 5 cut(s) 87, 183, 294, 843, 861
CviQI GTAC 4 cut(s) 313, 562, 824, 847
DdeI CTNAG 5 cut(s) 44, 115, 375, 498, 615
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 437, 720, 783
EarI CTCTTC 3 cut(s) 437, 720, 783
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 713
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 715, 727
Eco47III AGCGCT 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 713
Eco72I CACGTG 1 cut(s) 829
Eco81I CCTNAGG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 2 cut(s) 715, 727
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 5 cut(s) 90, 186, 297, 846, 864
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 546
FatI CATG 5 cut(s) 86, 182, 293, 842, 860
FauI CCCGC 1 cut(s) 498
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 2 cut(s) 300, 817
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 2 cut(s) 715, 727
Fsp4HI GCNGC 2 cut(s) 300, 817
FspI TGCGCA 1 cut(s) 672
GlaI GCGC 2 cut(s) 547, 672
GluI GCNGC 2 cut(s) 300, 817
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 1 cut(s) 756
HapII CCGG 2 cut(s) 464, 905
HhaI GCGC 2 cut(s) 548, 673
Hin1II CATG 5 cut(s) 90, 186, 297, 846, 864
Hin6I GCGC 2 cut(s) 546, 671
HinP1I GCGC 2 cut(s) 546, 671
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 3 cut(s) 93, 515, 968
HpaII CCGG 2 cut(s) 464, 905
HphI GGTGA 2 cut(s) 268, 920
Hpy166II GTNNAC 4 cut(s) 410, 592, 764, 826
Hpy188I TCNGA 4 cut(s) 60, 307, 520, 659
Hpy188III TCNNGA 2 cut(s) 148, 965
Hpy8I GTNNAC 4 cut(s) 410, 592, 764, 826
Hpy99I CGWCG 1 cut(s) 801
HpyAV CCTTC 2 cut(s) 850, 943
HpyCH4III ACNGT 2 cut(s) 154, 959
HpyCH4IV ACGT 2 cut(s) 828, 936
HpyCH4V TGCA 9 cut(s) 73, 90, 165, 177, 393, 459, 524, 706, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 5 cut(s) 44, 115, 375, 498, 615
HpySE526I ACGT 2 cut(s) 828, 936
Hsp92II CATG 5 cut(s) 90, 186, 297, 846, 864
HspAI GCGC 2 cut(s) 546, 671
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 2 cut(s) 437, 720
LmnI GCTCC 3 cut(s) 670, 710, 730
Lsp1109I GCAGC 2 cut(s) 286, 803
LweI GCATC 1 cut(s) 511
MaeII ACGT 2 cut(s) 828, 936
MaeIII GTNAC 5 cut(s) 39, 118, 274, 466, 550
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 5 cut(s) 20, 454, 707, 800, 923
MhlI GDGCHC 3 cut(s) 584, 715, 727
MluCI AATT 7 cut(s) 79, 209, 385, 683, 694, 738, 980
MlyI GAGTC 1 cut(s) 977
MnlI CCTC 9 cut(s) 325, 342, 595, 604, 632, 826, 829, 832, 858
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 2 cut(s) 341, 921
MspI CCGG 2 cut(s) 464, 905
MspR9I CCNGG 3 cut(s) 464, 599, 906
MvaI CCWGG 1 cut(s) 599
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 2 cut(s) 464, 906
NdeII GATC 1 cut(s) 55
NlaIII CATG 5 cut(s) 90, 186, 297, 846, 864
NlaIV GGNNCC 3 cut(s) 244, 666, 726
NmuCI GTSAC 3 cut(s) 39, 274, 550
NsbI TGCGCA 1 cut(s) 672
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 1 cut(s) 297
PaqCI CACCTGC 1 cut(s) 156
PciSI GCTCTTC 2 cut(s) 437, 720
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 93, 515
PkrI GCNGC 2 cut(s) 301, 818
PleI GAGTC 1 cut(s) 976
PmaCI CACGTG 1 cut(s) 829
PmlI CACGTG 1 cut(s) 829
PpsI GAGTC 1 cut(s) 976
Ppu21I YACGTR 1 cut(s) 829
PsiI TTATAA 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 597
PspCI CACGTG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 3 cut(s) 244, 666, 726
RsaI GTAC 4 cut(s) 314, 563, 825, 848
RsaNI GTAC 4 cut(s) 313, 562, 824, 847
SacI GAGCTC 1 cut(s) 715
SapI GCTCTTC 2 cut(s) 437, 720
SaqAI TTAA 2 cut(s) 341, 921
SatI GCNGC 2 cut(s) 300, 817
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 977
ScrFI CCNGG 3 cut(s) 464, 599, 906
SduI GDGCHC 3 cut(s) 584, 715, 727
SfaNI GCATC 1 cut(s) 511
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 7 cut(s) 79, 209, 385, 683, 694, 738, 980
SsiI CCGC 2 cut(s) 201, 491
SstI GAGCTC 1 cut(s) 715
StyD4I CCNGG 3 cut(s) 462, 597, 904
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 154, 959
TaiI ACGT 2 cut(s) 831, 939
TaqI TCGA 3 cut(s) 330, 774, 796
TasI AATT 7 cut(s) 79, 209, 385, 683, 694, 738, 980
TatI WGTACW 3 cut(s) 312, 561, 823
TfiI GAWTC 2 cut(s) 93, 515
Tru1I TTAA 2 cut(s) 341, 921
Tru9I TTAA 2 cut(s) 341, 921
TscAI CASTG 1 cut(s) 764
TseFI GTSAC 3 cut(s) 39, 274, 550
TseI GCWGC 2 cut(s) 299, 816
Tsp45I GTSAC 3 cut(s) 39, 274, 550
TspDTI ATGAA 5 cut(s) 391, 469, 707, 707, 962
TspGWI ACGGA 2 cut(s) 577, 723
TspRI CASTG 1 cut(s) 764
XapI RAATTY 4 cut(s) 209, 385, 694, 980
XceI RCATGY 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 763
XmnI GAANNNNTTC 1 cut(s) 792
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.