Rh6CG501000

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011619
Physical Location & Seq
Reverse (-)
66453437 .. 66455422
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG501000.1

Sequence Viewer

Length: 1473 bp
ATGCTGAGAGAAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGAAACCAGATCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAACTGATATTCTCTCAAGTCTTTGTTTCAAGACGGTCGCCATATGTAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCAATTTTGCTCATCTCCACTATTCAAAATCTATCAACAACCTTGGTTTTTTGAGCCAAGCAAACTGGACTATCACCTACATGAAAGAAGAATGTGCTACTTCTGATAAGTACATAGAACTGACTTTCGAGGATATGTTAAGAGAGAGGTTTCCCACTTCTTTTTATTTTCAGTTTATAAATTCGTTCAATGGTTTCATTTGTTTAGAAGGAATGAGAATTAGAGATGAGAAGAACTTGTATGTGTGCAACCCGGTTACGGGCGAGTTTATCACTATCCCCCTACCTAAGCAAAAATGTAGAGGCTCGTATGAATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAAACGAGCACCTCCGTTTACGACCAGGGGGAGAAAGAGGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTGTTGGAAAGGCTCCTGTGCAACCTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGTTCCATCGCTTTCATATTTTTCTCCTACAGGCGAGTGTATACATTCTTTCGACTTTGAAAAAGAAGAGTTTCGACGACTACCCCTACCAAGCTGCATCGTACACTTGGACGAGGCATGGAGGTTGGGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCGAGGTGAAGAAAATTTTAACGAATGTGACGTGTGGGTTATGAAGGATTACGGTATCCAAGAGTCTTGGACTAAAGTTTTTGTTATAAAAAACTTGCAGCTTCATCCCCCAGCACTAGAGTACTATAGACCATATTATGAACCAGTTATGTTTTTGAGTGATGGGAGCATTCTAATATCATACTGTAATGAAGTTTTCATTTCTTATAACCAAGAAATGGATAGTTACTTGAAAATCGAAGGTTACTCGGGAAGGATAATTGCTTACCATCCAAGCTTTGTTTCCCTTTGCACTTTTTCAAATGGAGCGAAAGTTGAGAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATTTTATGATGACTATGCTGGTTATGAGGTGGTGCCACCCCAAGATTCCAAAAAACGTAACACCTGCTCCGACCAGTCTGCTCTTGTAGAGGGTCTTTCAAAGGCCACAAAATCCTCTCTGGATTCCCCCTGGAGGATTGGGACTCAATGTGCTCGATGCGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTTGCAGTGTGTGAAAATTGCTTCGACAAAGGTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

490

Amino Acids

56.27

Weight (kDa)

6.75

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 1.3e-06 F-box domain
FBA_3 PF08268 115 - 327 4.2e-24 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 126 - 270 4.2e-08 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 142 - 366 4.1e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 383, 962, 1083
AarI CACCTGC 1 cut(s) 1307
Acc36I ACCTGC 1 cut(s) 1307
AccB1I GGYRCC 1 cut(s) 1267
AccB7I CCANNNNNTGG 1 cut(s) 1093
AccI GTMKAC 1 cut(s) 757
AciI CCGC 1 cut(s) 201
AcsI RAATTY 5 cut(s) 385, 518, 688, 889, 1235
AfaI GTAC 4 cut(s) 317, 557, 819, 998
AfeI AGCGCT 1 cut(s) 541
AfiI CCNNNNNNNGG 5 cut(s) 165, 463, 464, 1093, 1368
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 8 cut(s) 148, 231, 394, 677, 776, 1108, 1176, 1335
AjiI CACGTC 1 cut(s) 907
AjnI CCWGG 3 cut(s) 591, 1364, 1404
AjuI GAANNNNNNNTTGG 2 cut(s) 1141, 1173
AluBI AGCT 5 cut(s) 25, 707, 810, 976, 1152
AluI AGCT 5 cut(s) 25, 707, 810, 976, 1152
Alw21I GWGCWC 3 cut(s) 578, 709, 1390
Alw26I GTCTC 2 cut(s) 55, 866
Ama87I CYCGRG 1 cut(s) 1123
Aor51HI AGCGCT 1 cut(s) 541
AoxI GGCC 1 cut(s) 1338
ApeKI GCWGC 2 cut(s) 810, 973
ApoI RAATTY 5 cut(s) 385, 518, 688, 889, 1235
Asp700I GAANNNNTTC 1 cut(s) 786
AspLEI GCGC 1 cut(s) 542
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 271, 893
AvaI CYCGRG 1 cut(s) 1123
BanI GGYRCC 1 cut(s) 1267
BanII GRGCYC 1 cut(s) 709
Bbv12I GWGCWC 3 cut(s) 578, 709, 1390
BbvI GCAGC 2 cut(s) 797, 985
BccI CCATC 4 cut(s) 730, 1031, 1152, 1391
BcgI CGANNNNNNTGC 2 cut(s) 1295, 1329
BciT130I CCWGG 3 cut(s) 593, 1366, 1406
BciVI GTATCC 1 cut(s) 941
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 2 cut(s) 55, 866
BfaI CTAG 1 cut(s) 992
BfmI CTRYAG 2 cut(s) 744, 1000
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 1307
BfuI GTATCC 1 cut(s) 941
BisI GCNGC 2 cut(s) 811, 974
BlsI GCNGC 2 cut(s) 812, 975
BmcAI AGTACT 1 cut(s) 998
Bme1390I CCNGG 4 cut(s) 458, 593, 1366, 1406
BmeT110I CYCGRG 1 cut(s) 1123
BmgBI CACGTC 1 cut(s) 907
BmiI GGNNCC 5 cut(s) 660, 720, 1269, 1403, 1465
BmrFI CCNGG 4 cut(s) 458, 593, 1366, 1406
BmsI GCATC 2 cut(s) 822, 1382
BpmI CTGGAG 1 cut(s) 1387
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 458
BsaJI CCNNGG 4 cut(s) 247, 592, 1364, 1405
BsaXI ACNNNNNCTCC 4 cut(s) 1173, 1203, 1286, 1316
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 463, 464, 1093, 1368
Bse1I ACTGG 3 cut(s) 275, 1019, 1309
BseBI CCWGG 3 cut(s) 593, 1366, 1406
BseDI CCNNGG 4 cut(s) 247, 592, 1364, 1405
BseGI GGATG 2 cut(s) 979, 1144
BseLI CCNNNNNNNGG 5 cut(s) 165, 463, 464, 1093, 1368
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 3 cut(s) 275, 1019, 1309
BseRI GAGGAG 1 cut(s) 648
BseXI GCAGC 2 cut(s) 797, 985
BseYI CCCAGC 1 cut(s) 985
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 1340
BshNI GGYRCC 1 cut(s) 1267
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 578, 709, 1390
BsiHKCI CYCGRG 1 cut(s) 1123
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 2 cut(s) 540, 1390
BslI CCNNNNNNNGG 5 cut(s) 165, 463, 464, 1093, 1368
BsmAI GTCTC 2 cut(s) 55, 866
BsmFI GGGAC 2 cut(s) 540, 1390
BsmI GAATGC 1 cut(s) 1044
BsnI GGCC 1 cut(s) 1340
BsoBI CYCGRG 1 cut(s) 1123
Bsp1286I GDGCHC 3 cut(s) 578, 709, 1390
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 1340
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 5 cut(s) 660, 720, 1269, 1403, 1465
BspMI ACCTGC 1 cut(s) 1307
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 1267
BsrI ACTGG 3 cut(s) 275, 1019, 1309
BssECI CCNNGG 4 cut(s) 247, 592, 1364, 1405
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 758
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 758
Bst2UI CCWGG 3 cut(s) 593, 1366, 1406
Bst4CI ACNGT 3 cut(s) 154, 929, 1061
Bst6I CTCTTC 2 cut(s) 714, 777
BstDEI CTNAG 5 cut(s) 5, 44, 115, 492, 609
BstF5I GGATG 2 cut(s) 979, 1144
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 55, 866
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 156
BstNI CCWGG 3 cut(s) 593, 1366, 1406
BstSCI CCNGG 4 cut(s) 456, 591, 1364, 1404
BstSFI CTRYAG 2 cut(s) 744, 1000
BstV1I GCAGC 2 cut(s) 797, 985
BstZ17I GTATAC 1 cut(s) 758
BsuI GTATCC 1 cut(s) 941
BsuRI GGCC 1 cut(s) 1340
BtgZI GCGATG 2 cut(s) 708, 1410
BtrI CACGTC 1 cut(s) 907
BtsCI GGATG 2 cut(s) 979, 1144
BtsI GCAGTG 1 cut(s) 1443
BtsIMutI CAGTG 1 cut(s) 1443
BveI ACCTGC 1 cut(s) 1307
CfoI GCGC 1 cut(s) 542
Csp6I GTAC 4 cut(s) 316, 556, 818, 997
CviAII CATG 4 cut(s) 87, 183, 286, 834
CviQI GTAC 4 cut(s) 316, 556, 818, 997
DdeI CTNAG 5 cut(s) 5, 44, 115, 492, 609
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 714, 777
EarI CTCTTC 2 cut(s) 714, 777
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 707
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 709
Eco47III AGCGCT 1 cut(s) 541
Eco53kI GAGCTC 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 1123
EcoICRI GAGCTC 1 cut(s) 707
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 591, 1364, 1404
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 709
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 4 cut(s) 90, 186, 289, 837
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 2 cut(s) 540, 1390
FatI CATG 4 cut(s) 86, 182, 285, 833
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 757
Fnu4HI GCNGC 2 cut(s) 811, 974
FokI GGATG 2 cut(s) 966, 1131
FriOI GRGCYC 1 cut(s) 709
Fsp4HI GCNGC 2 cut(s) 811, 974
FspBI CTAG 1 cut(s) 992
GlaI GCGC 1 cut(s) 541
GluI GCNGC 2 cut(s) 811, 974
GsaI CCCAGC 1 cut(s) 989
GsuI CTGGAG 1 cut(s) 1387
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 1 cut(s) 1340
HapII CCGG 1 cut(s) 458
HhaI GCGC 1 cut(s) 542
Hin1II CATG 4 cut(s) 90, 186, 289, 837
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HindIII AAGCTT 2 cut(s) 23, 1150
HinfI GANTC 5 cut(s) 93, 938, 1280, 1358, 1378
HpaII CCGG 1 cut(s) 458
HphI GGTGA 2 cut(s) 271, 893
Hpy166II GTNNAC 3 cut(s) 586, 758, 820
Hpy188I TCNGA 5 cut(s) 60, 310, 1306, 1421, 1472
Hpy188III TCNNGA 3 cut(s) 148, 1125, 1355
Hpy8I GTNNAC 3 cut(s) 586, 758, 820
Hpy99I CGWCG 1 cut(s) 795
HpyAV CCTTC 4 cut(s) 407, 913, 1109, 1122
HpyCH4III ACNGT 3 cut(s) 154, 929, 1061
HpyCH4IV ACGT 2 cut(s) 906, 1291
HpyF3I CTNAG 5 cut(s) 5, 44, 115, 492, 609
HpySE526I ACGT 2 cut(s) 906, 1291
Hsp92II CATG 4 cut(s) 90, 186, 289, 837
HspAI GCGC 1 cut(s) 540
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 5 cut(s) 664, 704, 1041, 1181, 1307
Lsp1109I GCAGC 2 cut(s) 797, 985
LweI GCATC 2 cut(s) 822, 1382
MaeI CTAG 1 cut(s) 992
MaeII ACGT 2 cut(s) 906, 1291
MaeIII GTNAC 8 cut(s) 39, 118, 460, 544, 902, 1100, 1118, 1292
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 6 cut(s) 20, 305, 448, 701, 794, 896
MhlI GDGCHC 3 cut(s) 578, 709, 1390
MlyI GAGTC 2 cut(s) 947, 1372
MmeI TCCRAC 2 cut(s) 631, 1329
MroXI GAANNNNTTC 1 cut(s) 786
MseI TTAA 2 cut(s) 344, 894
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 4 cut(s) 458, 593, 1366, 1406
Mva1269I GAATGC 1 cut(s) 1044
MvaI CCWGG 3 cut(s) 593, 1366, 1406
NciI CCSGG 1 cut(s) 458
NdeI CATATG 1 cut(s) 161
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 90, 186, 289, 837
NlaIV GGNNCC 5 cut(s) 660, 720, 1269, 1403, 1465
NmuCI GTSAC 3 cut(s) 39, 544, 902
PaqCI CACCTGC 1 cut(s) 1307
PciSI GCTCTTC 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 903
PctI GAATGC 1 cut(s) 1044
PdmI GAANNNNTTC 1 cut(s) 786
PfeI GAWTC 3 cut(s) 93, 1280, 1358
PflMI CCANNNNNTGG 1 cut(s) 1093
PkrI GCNGC 2 cut(s) 812, 975
PleI GAGTC 2 cut(s) 946, 1372
PpsI GAGTC 2 cut(s) 946, 1372
PsiI TTATAA 3 cut(s) 383, 962, 1083
Psp124BI GAGCTC 1 cut(s) 709
Psp6I CCWGG 3 cut(s) 591, 1364, 1404
PspFI CCCAGC 1 cut(s) 985
PspGI CCWGG 3 cut(s) 591, 1364, 1404
PspN4I GGNNCC 5 cut(s) 660, 720, 1269, 1403, 1465
RsaI GTAC 4 cut(s) 317, 557, 819, 998
RsaNI GTAC 4 cut(s) 316, 556, 818, 997
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 709
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 2 cut(s) 344, 894
SatI GCNGC 2 cut(s) 811, 974
Sau3AI GATC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 998
SchI GAGTC 2 cut(s) 947, 1372
ScrFI CCNGG 4 cut(s) 458, 593, 1366, 1406
SduI GDGCHC 3 cut(s) 578, 709, 1390
SfaNI GCATC 2 cut(s) 822, 1382
SfcI CTRYAG 2 cut(s) 744, 1000
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 992
SstI GAGCTC 1 cut(s) 709
StyD4I CCNGG 4 cut(s) 456, 591, 1364, 1404
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 3 cut(s) 154, 929, 1061
TaiI ACGT 2 cut(s) 909, 1294
TaqI TCGA 6 cut(s) 333, 768, 790, 1113, 1390, 1455
TatI WGTACW 3 cut(s) 315, 555, 996
TfiI GAWTC 3 cut(s) 93, 1280, 1358
Tru1I TTAA 2 cut(s) 344, 894
Tru9I TTAA 2 cut(s) 344, 894
TscAI CASTG 1 cut(s) 1443
TseFI GTSAC 3 cut(s) 39, 544, 902
TseI GCWGC 2 cut(s) 810, 973
Tsp45I GTSAC 3 cut(s) 39, 544, 902
TspGWI ACGGA 2 cut(s) 571, 717
TspRI CASTG 1 cut(s) 1443
Van91I CCANNNNNTGG 1 cut(s) 1093
XapI RAATTY 5 cut(s) 385, 518, 688, 889, 1235
XmiI GTMKAC 1 cut(s) 757
XmnI GAANNNNTTC 1 cut(s) 786
XspI CTAG 1 cut(s) 992
ZrmI AGTACT 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.