Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007632.1

Orthogroup ID

OG0011619

Physical Location & Seq

Genomic Coordinates Reverse (-)

14336 .. 16050

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007632.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgaaagaagaatgtgctacttctgataagtacatagaactgactttcgagcatatgttaacagagaggtttcctgcttctttatattttcagtttataaattcgtgcaatggtttcatttgtttagaaggaaatcaaggaaggagtattatagatgagaatagcttttttgtgtgcaacccggttacgggcgagttcatcactatcccgctagctaaggaaaagtatacagaaagggatgcatttgtgggacttggttttagcgctgtgaccaatgagtacaaggtgttgcaaacgagcacctccgtttacgaccagggggagaaggaggctgagatttatacaatcggtagtagaggagtgtggagaagtattggaaaggctcctgtgcaacgtgttgaattacctatgaattcttatttgcacggagctcttcattgggttccatcgctttcggttttttctcctacaggcgagtgtatacattctttcgactttgaaaaagaagagtttcgacaactacccctaccaagctgcgttgtacacgcggaggagtcatggtacaaggagaaggcatggaggttgggggtgctacaaggttgtctctttttaggtgtgcgaggtgaagaacattttaacgaatgtgacgtgtgggttatgaaggattacggaatccaagagtcttggactaaagtttttgttataaaaaacttgcagcttcatccgccatcactagagtcctatagactatattatgaaccagttatgtttttgagtgatgggagcattctaatatcatactgtaatgaagttttcatttcttataaccaagaaatggatagttacttgaaaatcgaaggttactcgggagggataattgcttaccatccaagctttgtttccctttgcactttttcaaatggagcgaaagttgagaggattagagatagtaagatgtatgacaagttgtgtgctgaattttatgatgactatgctggttatgaggtggtgccaccccaagattccgaaaaacgtaacacctgctccgaccagtctgctcttgtagagggtctttcaaaggccacaaaatcctctctggattccccttggaggattgggactcaatgtgctcgatgcgatggaaacctgggttatgttttcagaggcaaggggtttgcagtgtgtgaaaattgcttcgacaaaggttccttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SelR

Protein Analysis

404

Amino Acids

45.97

Weight (kDa)

5.01

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309591 RchiOBHm_Chr6g0309611
rosa_laevigata	RLG00000010550
rosa_multiflora	Rmu_sc0007632.1_g000001 Rmu_sc0007632.1_g000003 Rmu_sc0008462.1_g000004
rosa_rugosa	Rorug06G0373000 Rorug06G0373000 Rorug06G0373100
rosa_samantha	Rh6AG486700 Rh6BG496000 Rh6BG496100 Rh6BG496300 Rh6CG500900 Rh6CG501000 Rh6DG486800 Rh6DG486900 Rh6DG487100
rosa_wichuraiana	Rw6G042380 Rw6G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	98, 704, 825
AarI	CACCTGC	1 cut(s)	1049
Acc36I	ACCTGC	1 cut(s)	1049
AccB1I	GGYRCC	1 cut(s)	1009
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccI	GTMKAC	2 cut(s)	227, 481
AccII	CGCG	1 cut(s)	548
AciI	CCGC	3 cut(s)	209, 548, 725
AcsI	RAATTY	3 cut(s)	100, 412, 977
AfaI	GTAC	4 cut(s)	32, 281, 543, 563
AfeI	AGCGCT	1 cut(s)	265
AfiI	CCNNNNNNNGG	4 cut(s)	187, 188, 835, 1110
AflIII	ACRYGT	2 cut(s)	394, 648
AgsI	TTSAA	5 cut(s)	401, 500, 850, 918, 1077
AjiI	CACGTC	1 cut(s)	649
AjnI	CCWGG	2 cut(s)	315, 1146
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AluBI	AGCT	6 cut(s)	165, 215, 431, 534, 718, 894
AluI	AGCT	6 cut(s)	165, 215, 431, 534, 718, 894
Alw21I	GWGCWC	3 cut(s)	302, 433, 1132
Alw26I	GTCTC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	865
Aor51HI	AGCGCT	1 cut(s)	265
AoxI	GGCC	1 cut(s)	1080
ApeKI	GCWGC	2 cut(s)	534, 715
ApoI	RAATTY	3 cut(s)	100, 412, 977
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	635
AsuNHI	GCTAGC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	1009
BanII	GRGCYC	1 cut(s)	433
Bbv12I	GWGCWC	3 cut(s)	302, 433, 1132
BbvI	GCAGC	2 cut(s)	521, 727
BccI	CCATC	5 cut(s)	454, 736, 773, 894, 1133
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	2 cut(s)	317, 1148
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	2 cut(s)	212, 734
BfmI	CTRYAG	2 cut(s)	468, 742
BfoI	RGCGCY	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	1049
BisI	GCNGC	2 cut(s)	535, 716
BlsI	GCNGC	2 cut(s)	536, 717
Bme1390I	CCNGG	3 cut(s)	182, 317, 1148
BmeT110I	CYCGRG	1 cut(s)	865
BmgBI	CACGTC	1 cut(s)	649
BmiI	GGNNCC	4 cut(s)	384, 444, 1011, 1207
BmrFI	CCNGG	3 cut(s)	182, 317, 1148
BmsI	GCATC	2 cut(s)	229, 1124
BmtI	GCTAGC	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	316, 1106, 1147
BsaXI	ACNNNNNCTCC	6 cut(s)	545, 575, 915, 945, 1028, 1058
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 188, 835, 1110
Bse1I	ACTGG	2 cut(s)	761, 1051
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	317, 1148
BseDI	CCNNGG	3 cut(s)	316, 1106, 1147
BseGI	GGATG	3 cut(s)	244, 721, 886
BseLI	CCNNNNNNNGG	4 cut(s)	187, 188, 835, 1110
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	761, 1051
BseRI	GAGGAG	2 cut(s)	372, 566
BseXI	GCAGC	2 cut(s)	521, 727
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	1 cut(s)	1082
BshNI	GGYRCC	1 cut(s)	1009
BsiHKAI	GWGCWC	3 cut(s)	302, 433, 1132
BsiHKCI	CYCGRG	1 cut(s)	865
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	2 cut(s)	264, 1132
BslI	CCNNNNNNNGG	4 cut(s)	187, 188, 835, 1110
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	2 cut(s)	264, 1132
BsmI	GAATGC	1 cut(s)	786
BsnI	GGCC	1 cut(s)	1082
BsoBI	CYCGRG	1 cut(s)	865
Bsp1286I	GDGCHC	3 cut(s)	302, 433, 1132
Bsp1407I	TGTACA	1 cut(s)	541
BspACI	CCGC	3 cut(s)	209, 548, 725
BspANI	GGCC	1 cut(s)	1082
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	4 cut(s)	384, 444, 1011, 1207
BspMI	ACCTGC	1 cut(s)	1049
BspOI	GCTAGC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	1009
BsrDI	GCAATG	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	761, 1051
BssECI	CCNNGG	3 cut(s)	316, 1106, 1147
BssNAI	GTATAC	2 cut(s)	228, 482
BssT1I	CCWWGG	1 cut(s)	1106
Bst1107I	GTATAC	2 cut(s)	228, 482
Bst2UI	CCWGG	2 cut(s)	317, 1148
Bst4CI	ACNGT	1 cut(s)	803
Bst6I	CTCTTC	2 cut(s)	438, 501
BstAUI	TGTACA	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	216, 333
BstF5I	GGATG	3 cut(s)	244, 721, 886
BstFNI	CGCG	1 cut(s)	548
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstMAI	GTCTC	1 cut(s)	608
BstMWI	GCNNNNNNNGC	1 cut(s)	724
BstNI	CCWGG	2 cut(s)	317, 1148
BstSCI	CCNGG	3 cut(s)	180, 315, 1146
BstSFI	CTRYAG	2 cut(s)	468, 742
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	521, 727
BstZ17I	GTATAC	2 cut(s)	228, 482
BsuRI	GGCC	1 cut(s)	1082
BtgZI	GCGATG	2 cut(s)	432, 1152
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	244, 721, 886
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	1 cut(s)	1185
BveI	ACCTGC	1 cut(s)	1049
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	4 cut(s)	31, 280, 542, 562
CviAII	CATG	2 cut(s)	558, 576
CviJI	RGCY	9 cut(s)	165, 215, 332, 383, 431, 534, 718, 894, 1082
CviKI_1	RGCY	9 cut(s)	165, 215, 332, 383, 431, 534, 718, 894, 1082
CviQI	GTAC	4 cut(s)	31, 280, 542, 562
DdeI	CTNAG	2 cut(s)	216, 333
Eam1104I	CTCTTC	2 cut(s)	438, 501
EarI	CTCTTC	2 cut(s)	438, 501
EciI	GGCGGA	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	1106
Eco24I	GRGCYC	1 cut(s)	433
Eco47III	AGCGCT	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	865
EcoICRI	GAGCTC	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	315, 1146
EcoT14I	CCWWGG	1 cut(s)	1106
EcoT22I	ATGCAT	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	1106
FaeI	CATG	2 cut(s)	561, 579
FaqI	GGGAC	2 cut(s)	264, 1132
FatI	CATG	2 cut(s)	557, 575
FauI	CCCGC	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	54
FblI	GTMKAC	2 cut(s)	227, 481
Fnu4HI	GCNGC	2 cut(s)	535, 716
FokI	GGATG	3 cut(s)	251, 708, 873
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	2 cut(s)	535, 716
FspBI	CTAG	2 cut(s)	212, 734
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	2 cut(s)	535, 716
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	1082
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	561, 579
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	892
HinfI	GANTC	7 cut(s)	554, 672, 680, 737, 1022, 1100, 1120
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	5 cut(s)	60, 228, 310, 482, 544
Hpy188I	TCNGA	5 cut(s)	25, 1027, 1048, 1163, 1214
Hpy188III	TCNNGA	2 cut(s)	867, 1097
Hpy8I	GTNNAC	5 cut(s)	60, 228, 310, 482, 544
HpyAV	CCTTC	6 cut(s)	122, 135, 319, 565, 655, 851
HpyCH4III	ACNGT	1 cut(s)	803
HpyCH4IV	ACGT	3 cut(s)	394, 648, 1033
HpyCH4V	TGCA	9 cut(s)	108, 177, 242, 292, 391, 424, 715, 909, 1178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	724
HpyF3I	CTNAG	2 cut(s)	216, 333
HpySE526I	ACGT	3 cut(s)	394, 648, 1033
Hsp92II	CATG	2 cut(s)	561, 579
HspAI	GCGC	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	5 cut(s)	388, 428, 783, 923, 1049
Lsp1109I	GCAGC	2 cut(s)	521, 727
LweI	GCATC	2 cut(s)	229, 1124
MaeI	CTAG	2 cut(s)	212, 734
MaeII	ACGT	3 cut(s)	394, 648, 1033
MaeIII	GTNAC	6 cut(s)	184, 268, 644, 842, 860, 1034
MboII	GAAGA	4 cut(s)	20, 425, 518, 638
MhlI	GDGCHC	3 cut(s)	302, 433, 1132
MluCI	AATT	6 cut(s)	100, 401, 412, 876, 977, 1189
MlyI	GAGTC	4 cut(s)	563, 689, 746, 1114
MmeI	TCCRAC	1 cut(s)	1071
Mph1103I	ATGCAT	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	2 cut(s)	59, 636
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	182, 317, 1148
Mva1269I	GAATGC	1 cut(s)	786
MvaI	CCWGG	2 cut(s)	317, 1148
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	724
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	54
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	561, 579
NlaIV	GGNNCC	4 cut(s)	384, 444, 1011, 1207
NmuCI	GTSAC	2 cut(s)	268, 644
NsiI	ATGCAT	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	1049
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PctI	GAATGC	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	672, 1022, 1100
PflMI	CCANNNNNTGG	1 cut(s)	835
PkrI	GCNGC	2 cut(s)	536, 717
PleI	GAGTC	4 cut(s)	562, 688, 745, 1114
PpsI	GAGTC	4 cut(s)	562, 688, 745, 1114
PsiI	TTATAA	3 cut(s)	98, 704, 825
Psp124BI	GAGCTC	1 cut(s)	433
Psp6I	CCWGG	2 cut(s)	315, 1146
PspGI	CCWGG	2 cut(s)	315, 1146
PspN4I	GGNNCC	4 cut(s)	384, 444, 1011, 1207
RsaI	GTAC	4 cut(s)	32, 281, 543, 563
RsaNI	GTAC	4 cut(s)	31, 280, 542, 562
SacI	GAGCTC	1 cut(s)	433
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	59, 636
SatI	GCNGC	2 cut(s)	535, 716
SchI	GAGTC	4 cut(s)	563, 689, 746, 1114
ScrFI	CCNGG	3 cut(s)	182, 317, 1148
SduI	GDGCHC	3 cut(s)	302, 433, 1132
SfaNI	GCATC	2 cut(s)	229, 1124
SfcI	CTRYAG	2 cut(s)	468, 742
Sse9I	AATT	6 cut(s)	100, 401, 412, 876, 977, 1189
SsiI	CCGC	3 cut(s)	209, 548, 725
SspMI	CTAG	2 cut(s)	212, 734
SstI	GAGCTC	1 cut(s)	433
StyD4I	CCNGG	3 cut(s)	180, 315, 1146
StyI	CCWWGG	1 cut(s)	1106
TaaI	ACNGT	1 cut(s)	803
TaiI	ACGT	3 cut(s)	397, 651, 1036
TaqI	TCGA	6 cut(s)	48, 492, 514, 855, 1132, 1197
TasI	AATT	6 cut(s)	100, 401, 412, 876, 977, 1189
TatI	WGTACW	3 cut(s)	30, 279, 541
TfiI	GAWTC	3 cut(s)	672, 1022, 1100
Tru1I	TTAA	2 cut(s)	59, 636
Tru9I	TTAA	2 cut(s)	59, 636
TscAI	CASTG	1 cut(s)	1185
TseFI	GTSAC	2 cut(s)	268, 644
TseI	GCWGC	2 cut(s)	534, 715
Tsp45I	GTSAC	2 cut(s)	268, 644
TspGWI	ACGGA	3 cut(s)	295, 441, 684
TspRI	CASTG	1 cut(s)	1185
Van91I	CCANNNNNTGG	1 cut(s)	835
XapI	RAATTY	3 cut(s)	100, 412, 977
XmiI	GTMKAC	2 cut(s)	227, 481
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	2 cut(s)	212, 734
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.