Rh6CG500900

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011619
Physical Location & Seq
Reverse (-)
66446901 .. 66449143
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG500900.1

Sequence Viewer

Length: 1518 bp
ATGTTGATAGGAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGAAACCAGACCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAACTCATATTCTCTCAAGTCTTTGTTTCAAGACGGTCGCCATATGCAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCAATTTTGCCCATCTCCACTATTCAAAATCTATCGGCACCCTTGGTTTTTTGAGCCAAGGCTTGAATGTCACCTACATAAAAGAAGCATGTGCTGCTTCTGATAAGTACATAGAACTGACTTTCGAGGATATGTTAAGAGAGAGGTTTCCCAGTACTTCTTTTTATTCTCAGTTTATAAATTCGTGCAATGGTTTCATTTGTTTACAAGGAAATCAAGGAAGGAGTATTATAGATGAGAAGAGCTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTACCTAAGGAAAAGTATATAGGATCGGATGCATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAAACGAGCACCTCCGTTTACGACCAGGAGGAGAAAGAGGCTGAGATATATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGTGCAACCTGTTGAATTACCTACGAATTCTTATTTGCACGGAGCTCTTCATTGGGCTCCATCGCTTTCAATTTTTTCTTCTACAGGCGAGTGCATACATTCTTTCGACTTTGAAAAAGAAGAGTTTCGACGACTACCCCTACCAAGCTGCCTTGTACACGTGGAGGAGTCATGGTCGTACGGGGAGAAGGCATGGAGGTTGGGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCCGGGTGAAGATCATTATAACGAATGTGACGTGTGGGTTATGAAGGATTACGGTGTTCAAGAGTCTTGGACTAAAGTTTTTGTTATTAAAAACTTGCTCCTGGATACATTGTGTAGACCATATTTTGAACCGCTTATGTTTTTGAGTGATGGGAGCATTCTAATATCATATTGTAATGAAGTTTTGATTTCTTATAACCAAGAAACGGAGAGTTACTTGAAAATCGAAGGTTACTTGGGAAGGATAACTGCTTACCATCCAAGCTTTGTTTCCCTTTGCACTGTTTCAAATGGAGCGGATGTTGAAAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATCTTATGATGACTCTGCTGTTTATGAGGTGGTGCCACCCCAAGATTCCGAAAAACGTAACACCTGCTCCGACCATGCCAGTCTGCTTTTCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGTGATGGGAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTCGCAGTGTGTGAAAACTGCTTCAACAAAGGTTCCTCCTGAAGACTGCACGTTAAAAGGTTCCTCCATGGCTTTCATCTTTCTTTTCGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

505

Amino Acids

56.95

Weight (kDa)

5.66

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 3.5e-07 F-box domain
FBA_3 PF08268 116 - 333 7.1e-23 F-box associated beta propeller domain
FBA_1 PF07734 125 - 373 4.1e-22 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 125 - 273 9.6e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 383, 924, 1101
AarI CACCTGC 2 cut(s) 156, 1325
Acc36I ACCTGC 2 cut(s) 156, 1325
AccB1I GGYRCC 2 cut(s) 242, 1285
AccBSI CCGCTC 1 cut(s) 1202
AccI GTMKAC 1 cut(s) 1021
AciI CCGC 4 cut(s) 201, 494, 1037, 1202
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 2 cut(s) 385, 697
AcuI CTGAAG 1 cut(s) 1482
AcvI CACGTG 1 cut(s) 832
AfaI GTAC 5 cut(s) 314, 361, 566, 828, 851
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1111, 1358
AflIII ACRYGT 2 cut(s) 829, 936
AjiI CACGTC 1 cut(s) 937
AjnI CCWGG 3 cut(s) 600, 1005, 1394
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AluBI AGCT 5 cut(s) 25, 450, 716, 819, 1170
AluI AGCT 5 cut(s) 25, 450, 716, 819, 1170
Alw21I GWGCWC 3 cut(s) 587, 718, 1380
Alw26I GTCTC 2 cut(s) 55, 896
AlwI GGATC 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 550
ApeKI GCWGC 2 cut(s) 299, 819
ApoI RAATTY 2 cut(s) 385, 697
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 551
AsuC2I CCSGG 2 cut(s) 467, 909
AsuHPI GGTGA 2 cut(s) 268, 923
AxyI CCTNAGG 1 cut(s) 501
BanI GGYRCC 2 cut(s) 242, 1285
BanII GRGCYC 2 cut(s) 718, 730
BbrPI CACGTG 1 cut(s) 832
BbsI GAAGAC 1 cut(s) 1470
Bbv12I GWGCWC 3 cut(s) 587, 718, 1380
BbvI GCAGC 2 cut(s) 286, 806
BccI CCATC 5 cut(s) 225, 739, 1049, 1170, 1381
BcgI CGANNNNNNTGC 2 cut(s) 1404, 1438
BciT130I CCWGG 3 cut(s) 602, 1007, 1396
BciVI GTATCC 1 cut(s) 1003
BcnI CCSGG 2 cut(s) 467, 909
BcoDI GTCTC 2 cut(s) 55, 896
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 2 cut(s) 156, 1325
BfuI GTATCC 1 cut(s) 1003
BisI GCNGC 2 cut(s) 300, 820
BlsI GCNGC 2 cut(s) 301, 821
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 5 cut(s) 467, 602, 909, 1007, 1396
BmgBI CACGTC 1 cut(s) 937
BmiI GGNNCC 7 cut(s) 244, 669, 729, 1287, 1393, 1455, 1483
BmrFI CCNGG 5 cut(s) 467, 602, 909, 1007, 1396
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 1470
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 2 cut(s) 467, 909
BsaAI YACGTR 1 cut(s) 832
BsaJI CCNNGG 5 cut(s) 247, 262, 1354, 1395, 1488
BsaXI ACNNNNNCTCC 6 cut(s) 830, 860, 1191, 1221, 1304, 1334
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1111, 1358
Bse1I ACTGG 2 cut(s) 357, 1332
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 3 cut(s) 602, 1007, 1396
BseDI CCNNGG 5 cut(s) 247, 262, 1354, 1395, 1488
BseGI GGATG 3 cut(s) 529, 1162, 1210
BseLI CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1111, 1358
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 389, 609
BseNI ACTGG 2 cut(s) 357, 1332
BseRI GAGGAG 3 cut(s) 620, 657, 851
BseXI GCAGC 2 cut(s) 286, 806
BsgI GTGCAG 1 cut(s) 1453
Bsh1285I CGRYCG 1 cut(s) 156
BshNI GGYRCC 2 cut(s) 242, 1285
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 587, 718, 1380
BsiSI CCGG 2 cut(s) 467, 908
BsiWI CGTACG 1 cut(s) 849
BslFI GGGAC 2 cut(s) 549, 1380
BslI CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1111, 1358
BsmAI GTCTC 2 cut(s) 55, 896
BsmFI GGGAC 2 cut(s) 549, 1380
BsmI GAATGC 1 cut(s) 1062
Bsp1286I GDGCHC 4 cut(s) 587, 718, 730, 1380
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 2 cut(s) 518, 916
Bsp19I CCATGG 1 cut(s) 1488
BspACI CCGC 4 cut(s) 201, 494, 1037, 1202
BspCNI CTCAG 2 cut(s) 388, 610
BspLI GGNNCC 7 cut(s) 244, 669, 729, 1287, 1393, 1455, 1483
BspMI ACCTGC 2 cut(s) 156, 1325
BspPI GGATC 1 cut(s) 526
BspQI GCTCTTC 2 cut(s) 440, 723
BspT107I GGYRCC 2 cut(s) 242, 1285
BsrBI CCGCTC 1 cut(s) 1202
BsrDI GCAATG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 826
BsrI ACTGG 2 cut(s) 357, 1332
BssECI CCNNGG 5 cut(s) 247, 262, 1354, 1395, 1488
BssMI GATC 2 cut(s) 518, 916
BssT1I CCWWGG 4 cut(s) 247, 262, 1354, 1488
Bst2UI CCWGG 3 cut(s) 602, 1007, 1396
Bst4CI ACNGT 3 cut(s) 154, 959, 1189
Bst6I CTCTTC 3 cut(s) 440, 723, 786
BstAPI GCANNNNNTGC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 826
BstBAI YACGTR 1 cut(s) 832
BstDEI CTNAG 5 cut(s) 44, 115, 375, 501, 618
BstDSI CCRYGG 1 cut(s) 1488
BstF5I GGATG 3 cut(s) 529, 1162, 1210
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 2 cut(s) 521, 919
BstMAI GTCTC 2 cut(s) 55, 896
BstMBI GATC 2 cut(s) 518, 916
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 3 cut(s) 602, 1007, 1396
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 5 cut(s) 465, 600, 907, 1005, 1394
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 2 cut(s) 286, 806
BstV2I GAAGAC 1 cut(s) 1470
Bsu36I CCTNAGG 1 cut(s) 501
BsuI GTATCC 1 cut(s) 1003
BtgI CCRYGG 1 cut(s) 1488
BtgZI GCGATG 1 cut(s) 717
BtrI CACGTC 1 cut(s) 937
BtsCI GGATG 3 cut(s) 529, 1162, 1210
BtsI GCAGTG 1 cut(s) 1433
BtsIMutI CAGTG 2 cut(s) 1185, 1433
BveI ACCTGC 2 cut(s) 156, 1325
CfoI GCGC 1 cut(s) 551
Csp6I GTAC 5 cut(s) 313, 360, 565, 827, 850
CviAII CATG 7 cut(s) 87, 183, 294, 843, 864, 1328, 1489
CviQI GTAC 5 cut(s) 313, 360, 565, 827, 850
DdeI CTNAG 5 cut(s) 44, 115, 375, 501, 618
DpnI GATC 2 cut(s) 520, 918
DpnII GATC 2 cut(s) 518, 916
Eam1104I CTCTTC 3 cut(s) 440, 723, 786
EarI CTCTTC 3 cut(s) 440, 723, 786
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 716
Eco130I CCWWGG 4 cut(s) 247, 262, 1354, 1488
Eco24I GRGCYC 2 cut(s) 718, 730
Eco47III AGCGCT 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 1482
Eco72I CACGTG 1 cut(s) 832
Eco81I CCTNAGG 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 3 cut(s) 600, 1005, 1394
EcoT14I CCWWGG 4 cut(s) 247, 262, 1354, 1488
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 2 cut(s) 718, 730
ErhI CCWWGG 4 cut(s) 247, 262, 1354, 1488
FaeI CATG 7 cut(s) 90, 186, 297, 846, 867, 1331, 1492
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 2 cut(s) 549, 1380
FatI CATG 7 cut(s) 86, 182, 293, 842, 863, 1327, 1488
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 1021
Fnu4HI GCNGC 2 cut(s) 300, 820
FokI GGATG 3 cut(s) 536, 1149, 1217
FriOI GRGCYC 2 cut(s) 718, 730
Fsp4HI GCNGC 2 cut(s) 300, 820
GlaI GCGC 1 cut(s) 550
GluI GCNGC 2 cut(s) 300, 820
HaeII RGCGCY 1 cut(s) 552
HapII CCGG 2 cut(s) 467, 908
HhaI GCGC 1 cut(s) 551
Hin1II CATG 7 cut(s) 90, 186, 297, 846, 867, 1331, 1492
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HindIII AAGCTT 2 cut(s) 23, 1168
HinfI GANTC 8 cut(s) 93, 839, 968, 1253, 1265, 1298, 1348, 1368
HpaII CCGG 2 cut(s) 467, 908
HphI GGTGA 2 cut(s) 268, 923
Hpy166II GTNNAC 4 cut(s) 410, 595, 829, 1022
Hpy188I TCNGA 5 cut(s) 307, 523, 1303, 1324, 1411
Hpy188III TCNNGA 4 cut(s) 148, 965, 1345, 1460
Hpy8I GTNNAC 4 cut(s) 410, 595, 829, 1022
Hpy99I CGWCG 1 cut(s) 804
HpyAV CCTTC 5 cut(s) 420, 853, 943, 1127, 1140
HpyCH4III ACNGT 3 cut(s) 154, 959, 1189
HpyCH4IV ACGT 4 cut(s) 831, 936, 1309, 1472
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 5 cut(s) 44, 115, 375, 501, 618
HpySE526I ACGT 4 cut(s) 831, 936, 1309, 1472
Hsp92II CATG 7 cut(s) 90, 186, 297, 846, 867, 1331, 1492
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 2 cut(s) 518, 916
LguI GCTCTTC 2 cut(s) 440, 723
LmnI GCTCC 7 cut(s) 673, 713, 733, 1008, 1059, 1199, 1325
Lsp1109I GCAGC 2 cut(s) 286, 806
LweI GCATC 1 cut(s) 514
MaeII ACGT 4 cut(s) 831, 936, 1309, 1472
MaeIII GTNAC 9 cut(s) 39, 118, 274, 469, 553, 932, 1118, 1136, 1310
MalI GATC 2 cut(s) 520, 918
MbiI CCGCTC 1 cut(s) 1202
MboI GATC 2 cut(s) 518, 916
MboII GAAGA 7 cut(s) 20, 457, 710, 741, 803, 926, 1475
MhlI GDGCHC 4 cut(s) 587, 718, 730, 1380
MluCI AATT 6 cut(s) 79, 208, 385, 686, 697, 741
MlyI GAGTC 4 cut(s) 848, 977, 1259, 1362
MmeI TCCRAC 1 cut(s) 1347
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 3 cut(s) 341, 993, 1475
MspI CCGG 2 cut(s) 467, 908
MspR9I CCNGG 5 cut(s) 467, 602, 909, 1007, 1396
Mva1269I GAATGC 1 cut(s) 1062
MvaI CCWGG 3 cut(s) 602, 1007, 1396
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 2 cut(s) 467, 909
NcoI CCATGG 1 cut(s) 1488
NdeI CATATG 1 cut(s) 161
NdeII GATC 2 cut(s) 518, 916
NlaIII CATG 7 cut(s) 90, 186, 297, 846, 867, 1331, 1492
NlaIV GGNNCC 7 cut(s) 244, 669, 729, 1287, 1393, 1455, 1483
NmuCI GTSAC 4 cut(s) 39, 274, 553, 932
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 297
PaqCI CACCTGC 2 cut(s) 156, 1325
PciSI GCTCTTC 2 cut(s) 440, 723
PcsI WCGNNNNNNNCGW 1 cut(s) 933
PctI GAATGC 1 cut(s) 1062
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 4 cut(s) 93, 1253, 1298, 1348
Pfl23II CGTACG 1 cut(s) 849
PfoI TCCNGGA 1 cut(s) 1005
PkrI GCNGC 2 cut(s) 301, 821
PleI GAGTC 4 cut(s) 847, 976, 1259, 1362
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
PpsI GAGTC 4 cut(s) 847, 976, 1259, 1362
Ppu21I YACGTR 1 cut(s) 832
PsiI TTATAA 3 cut(s) 383, 924, 1101
Psp124BI GAGCTC 1 cut(s) 718
Psp6I CCWGG 3 cut(s) 600, 1005, 1394
PspCI CACGTG 1 cut(s) 832
PspGI CCWGG 3 cut(s) 600, 1005, 1394
PspLI CGTACG 1 cut(s) 849
PspN4I GGNNCC 7 cut(s) 244, 669, 729, 1287, 1393, 1455, 1483
RsaI GTAC 5 cut(s) 314, 361, 566, 828, 851
RsaNI GTAC 5 cut(s) 313, 360, 565, 827, 850
SacI GAGCTC 1 cut(s) 718
SapI GCTCTTC 2 cut(s) 440, 723
SaqAI TTAA 3 cut(s) 341, 993, 1475
SatI GCNGC 2 cut(s) 300, 820
Sau3AI GATC 2 cut(s) 518, 916
ScaI AGTACT 1 cut(s) 361
SchI GAGTC 4 cut(s) 848, 977, 1259, 1362
ScrFI CCNGG 5 cut(s) 467, 602, 909, 1007, 1396
SduI GDGCHC 4 cut(s) 587, 718, 730, 1380
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 6 cut(s) 79, 208, 385, 686, 697, 741
SsiI CCGC 4 cut(s) 201, 494, 1037, 1202
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 5 cut(s) 465, 600, 907, 1005, 1394
StyI CCWWGG 4 cut(s) 247, 262, 1354, 1488
TaaI ACNGT 3 cut(s) 154, 959, 1189
TaiI ACGT 4 cut(s) 834, 939, 1312, 1475
TaqI TCGA 6 cut(s) 330, 777, 799, 1131, 1380, 1509
TasI AATT 6 cut(s) 79, 208, 385, 686, 697, 741
TatI WGTACW 4 cut(s) 312, 359, 564, 826
TfiI GAWTC 4 cut(s) 93, 1253, 1298, 1348
Tru1I TTAA 3 cut(s) 341, 993, 1475
Tru9I TTAA 3 cut(s) 341, 993, 1475
TscAI CASTG 2 cut(s) 1192, 1433
TseFI GTSAC 4 cut(s) 39, 274, 553, 932
TseI GCWGC 2 cut(s) 299, 819
Tsp45I GTSAC 4 cut(s) 39, 274, 553, 932
TspDTI ATGAA 6 cut(s) 391, 472, 710, 962, 1098, 1486
TspGWI ACGGA 3 cut(s) 580, 726, 1127
TspRI CASTG 2 cut(s) 1192, 1433
XapI RAATTY 2 cut(s) 385, 697
XceI RCATGY 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 1021
XmnI GAANNNNTTC 1 cut(s) 795
ZrmI AGTACT 1 cut(s) 361
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.