Rw6G042390

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011619
Physical Location & Seq
Reverse (-)
65868689 .. 65870680
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042390.1

Sequence Viewer

Length: 1512 bp
ATGCTGAGAGAAAAGAAACGAAAGCTTCTTCGCATATCGTCACTAAGGAAACCAGATCAGAGACAAGAACTGCAACCTAATTTTCCATGCAGATTCCATTCACTCCCACAAGTCTTAGTAACTGACATTCTTTCAAGTCTCTGTTTCAAGACGGTCGCCATATGCAGGTGCGTTTGCAAAGCATGGCTTTCTATTACTTCCGCCCCCAATTTTGCTCATCTCCACTATTCAAAATCTATCGACAACCTTGGTTTTTTGAGCATAGCAAACCAGACTATCACCTACATGAAAGAAGAATGTGCTACTTCTGATAAGTACATAGAACTGACTTTCGAGCATATGTTAAGAGAGAGGTTTCCTGCTTCTTTATATTTTCAGTTTATAAATTCGTGCAATGGTTTCATTTGTTTAGAAGGAAATCAAGGAAGGAGTATTATAGATGAGAAGAGCTTTTATGTGTGCAACCCGGTTACGGGCGAGTTCATCACTATCCCGCTAGCTAAGGAATATATAGAATCGGATGCATTTGTGGGACTTGGTTTTAGCGCTGTGACCAATGAGTACAAGGTGTTGCAAACGAGCACCTCCGTTTACGACCAGGGGGAGAAGGAGGCTGAGATTTATACAATCGGTAGTAGAGGAGTGTGGAGAAGTATTGGAAAGGCTCCTGTGCAACGTGTTGAATTACCTATGAATTCTTATTTGCACGGAGCTCTTCATTGGGCTCCATCGCTTTCGGTTTTTTCTCCTACAGGCGAGTGTATACATTCTTTCGACTTTGAAAAAGAAGAGTTTCGACGACTACCCCTACCAAGCTGCGTTGTACACGTGGAGGAGTTATGGTACAAGGAGAAGGCATGGAGGTTGGGGGTGCTACAAGGTTGTCTCTTTTTAGGTGTGCGAGGTGAAGAAAATTTTAACGAATGTGACGTGTGGGTTATGAAGGATTACGGAATCCAAGAGTCTTGGACTAAAGTTTTTGTTATAAAAAACTTGCAGCTTCATCCGCCATCACTAGAGTCCTATAGACTATATTATGAACCAGTTATGTTTTTGAGTGATGGGAGCATTCTAATATCATACTGTAATGAAGTTTTCATTTCTTATAACCAAGAAATGGATAGTTACTTGAAAATCGAAGGTTACTCGGGAAGGATAATTGCTTACCATCCAAGCTTTGTTTCCCTTTGCACTTTTTCAAATGGAGCGAAAGTTGAGAGGATAAGAGATAGTAAGATGTATGACAAGTTGTGTGCTGAATTTTATGATGACTATGCTGGTTATGAGGTGGTGCCACCCCAAGATTCCGAAAAACGTAACACCTGCTCCGACCAGTCTGCTCTTGTAGAGGGTCTTTCAAAGGCCACAAAATCCTCTTTTGTTTTATTTCAGCTGGATTCCCCTTGGAGGATTGGGACTCAATGTGCTCGATGCGATGGAAACCTGGGTTATGTTTTCAGAGGCAAGGGGTTTGCAGTGTGTGAAAATTGCTTCGACAAAGGTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

503

Amino Acids

57.56

Weight (kDa)

6.01

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 71 1.3e-06 F-box domain
FBA_1 PF07734 87 - 374 7.1e-23 F-box associated beta propeller domain
FBA_3 PF08268 117 - 357 5e-23 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 126 - 272 1.5e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 383, 986, 1107
AarI CACCTGC 2 cut(s) 156, 1331
Acc36I ACCTGC 2 cut(s) 156, 1331
AccB1I GGYRCC 1 cut(s) 1291
AccB7I CCANNNNNTGG 1 cut(s) 1117
AccI GTMKAC 1 cut(s) 763
AciI CCGC 3 cut(s) 201, 494, 1007
AcsI RAATTY 4 cut(s) 385, 694, 913, 1259
AcvI CACGTG 1 cut(s) 829
AfaI GTAC 4 cut(s) 317, 563, 825, 845
AfeI AGCGCT 1 cut(s) 547
AfiI CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1117, 1407
AflIII ACRYGT 3 cut(s) 676, 826, 930
AgsI TTSAA 8 cut(s) 135, 148, 231, 683, 782, 1132, 1200, 1359
AjiI CACGTC 1 cut(s) 931
AjnI CCWGG 2 cut(s) 597, 1443
AjuI GAANNNNNNNTTGG 2 cut(s) 1165, 1197
AluBI AGCT 8 cut(s) 25, 450, 500, 713, 816, 1000, 1176, 1393
AluI AGCT 8 cut(s) 25, 450, 500, 713, 816, 1000, 1176, 1393
Alw21I GWGCWC 3 cut(s) 584, 715, 1429
Alw26I GTCTC 3 cut(s) 55, 143, 890
Ama87I CYCGRG 1 cut(s) 1147
Aor51HI AGCGCT 1 cut(s) 547
AoxI GGCC 1 cut(s) 1362
ApeKI GCWGC 2 cut(s) 816, 997
ApoI RAATTY 4 cut(s) 385, 694, 913, 1259
Asp700I GAANNNNTTC 1 cut(s) 792
AspLEI GCGC 1 cut(s) 548
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 271, 917
AsuNHI GCTAGC 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 1147
BanI GGYRCC 1 cut(s) 1291
BanII GRGCYC 2 cut(s) 715, 727
BbrPI CACGTG 1 cut(s) 829
Bbv12I GWGCWC 3 cut(s) 584, 715, 1429
BbvI GCAGC 2 cut(s) 803, 1009
BccI CCATC 5 cut(s) 736, 1018, 1055, 1176, 1430
BcgI CGANNNNNNTGC 2 cut(s) 1319, 1353
BciT130I CCWGG 2 cut(s) 599, 1445
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 3 cut(s) 55, 143, 890
BfaI CTAG 2 cut(s) 497, 1016
BfmI CTRYAG 2 cut(s) 750, 1024
BfoI RGCGCY 1 cut(s) 549
BfuAI ACCTGC 2 cut(s) 156, 1331
BisI GCNGC 2 cut(s) 817, 998
BlsI GCNGC 2 cut(s) 818, 999
Bme1390I CCNGG 3 cut(s) 467, 599, 1445
BmeT110I CYCGRG 1 cut(s) 1147
BmgBI CACGTC 1 cut(s) 931
BmiI GGNNCC 4 cut(s) 666, 726, 1293, 1504
BmrFI CCNGG 3 cut(s) 467, 599, 1445
BmsI GCATC 2 cut(s) 511, 1421
BmtI GCTAGC 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 467
BsaAI YACGTR 1 cut(s) 829
BsaJI CCNNGG 4 cut(s) 247, 598, 1403, 1444
BsaXI ACNNNNNCTCC 6 cut(s) 827, 857, 1197, 1227, 1310, 1340
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1117, 1407
Bse1I ACTGG 2 cut(s) 1043, 1333
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 2 cut(s) 599, 1445
BseDI CCNNGG 4 cut(s) 247, 598, 1403, 1444
BseGI GGATG 3 cut(s) 526, 1003, 1168
BseLI CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1117, 1407
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 1043, 1333
BseRI GAGGAG 2 cut(s) 654, 848
BseXI GCAGC 2 cut(s) 803, 1009
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 1364
BshNI GGYRCC 1 cut(s) 1291
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 584, 715, 1429
BsiHKCI CYCGRG 1 cut(s) 1147
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 2 cut(s) 546, 1429
BslI CCNNNNNNNGG 5 cut(s) 165, 472, 473, 1117, 1407
BsmAI GTCTC 3 cut(s) 55, 143, 890
BsmFI GGGAC 2 cut(s) 546, 1429
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 1 cut(s) 1364
BsoBI CYCGRG 1 cut(s) 1147
Bsp1286I GDGCHC 4 cut(s) 584, 715, 727, 1429
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 3 cut(s) 201, 494, 1007
BspANI GGCC 1 cut(s) 1364
BspCNI CTCAG 1 cut(s) 607
BspLI GGNNCC 4 cut(s) 666, 726, 1293, 1504
BspMI ACCTGC 2 cut(s) 156, 1331
BspOI GCTAGC 1 cut(s) 500
BspQI GCTCTTC 2 cut(s) 440, 720
BspT107I GGYRCC 1 cut(s) 1291
BsrDI GCAATG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 2 cut(s) 1043, 1333
BssECI CCNNGG 4 cut(s) 247, 598, 1403, 1444
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 764
BssT1I CCWWGG 2 cut(s) 247, 1403
Bst1107I GTATAC 1 cut(s) 764
Bst2UI CCWGG 2 cut(s) 599, 1445
Bst4CI ACNGT 2 cut(s) 154, 1085
Bst6I CTCTTC 3 cut(s) 440, 720, 783
BstAUI TGTACA 1 cut(s) 823
BstBAI YACGTR 1 cut(s) 829
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 5 cut(s) 5, 44, 115, 501, 615
BstF5I GGATG 3 cut(s) 526, 1003, 1168
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 3 cut(s) 55, 143, 890
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 1006
BstNI CCWGG 2 cut(s) 599, 1445
BstSCI CCNGG 3 cut(s) 465, 597, 1443
BstSFI CTRYAG 2 cut(s) 750, 1024
BstV1I GCAGC 2 cut(s) 803, 1009
BstZ17I GTATAC 1 cut(s) 764
BsuRI GGCC 1 cut(s) 1364
BtgZI GCGATG 2 cut(s) 714, 1449
BtrI CACGTC 1 cut(s) 931
BtsCI GGATG 3 cut(s) 526, 1003, 1168
BtsI GCAGTG 1 cut(s) 1482
BtsIMutI CAGTG 1 cut(s) 1482
BveI ACCTGC 2 cut(s) 156, 1331
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 1 cut(s) 548
Csp6I GTAC 4 cut(s) 316, 562, 824, 844
CviAII CATG 4 cut(s) 87, 183, 286, 858
CviQI GTAC 4 cut(s) 316, 562, 824, 844
DdeI CTNAG 5 cut(s) 5, 44, 115, 501, 615
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 440, 720, 783
EarI CTCTTC 3 cut(s) 440, 720, 783
EciI GGCGGA 2 cut(s) 190, 996
Ecl136II GAGCTC 1 cut(s) 713
Eco130I CCWWGG 2 cut(s) 247, 1403
Eco24I GRGCYC 2 cut(s) 715, 727
Eco47III AGCGCT 1 cut(s) 547
Eco53kI GAGCTC 1 cut(s) 713
Eco72I CACGTG 1 cut(s) 829
Eco88I CYCGRG 1 cut(s) 1147
EcoICRI GAGCTC 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 2 cut(s) 597, 1443
EcoT14I CCWWGG 2 cut(s) 247, 1403
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 2 cut(s) 715, 727
ErhI CCWWGG 2 cut(s) 247, 1403
FaeI CATG 4 cut(s) 90, 186, 289, 861
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 2 cut(s) 546, 1429
FatI CATG 4 cut(s) 86, 182, 285, 857
FauI CCCGC 1 cut(s) 501
FauNDI CATATG 2 cut(s) 161, 339
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 2 cut(s) 817, 998
FokI GGATG 3 cut(s) 533, 990, 1155
FriOI GRGCYC 2 cut(s) 715, 727
Fsp4HI GCNGC 2 cut(s) 817, 998
FspBI CTAG 2 cut(s) 497, 1016
GlaI GCGC 1 cut(s) 547
GluI GCNGC 2 cut(s) 817, 998
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 1 cut(s) 1364
HapII CCGG 1 cut(s) 467
HhaI GCGC 1 cut(s) 548
Hin1II CATG 4 cut(s) 90, 186, 289, 861
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HindIII AAGCTT 2 cut(s) 23, 1174
HinfI GANTC 8 cut(s) 93, 515, 954, 962, 1019, 1304, 1397, 1417
HpaII CCGG 1 cut(s) 467
HphI GGTGA 2 cut(s) 271, 917
Hpy166II GTNNAC 3 cut(s) 592, 764, 826
Hpy188I TCNGA 7 cut(s) 60, 310, 520, 1309, 1330, 1460, 1511
Hpy188III TCNNGA 2 cut(s) 148, 1149
Hpy8I GTNNAC 3 cut(s) 592, 764, 826
Hpy99I CGWCG 1 cut(s) 801
HpyAV CCTTC 7 cut(s) 407, 420, 601, 847, 937, 1133, 1146
HpyCH4III ACNGT 2 cut(s) 154, 1085
HpyCH4IV ACGT 4 cut(s) 676, 828, 930, 1315
HpyF10VI GCNNNNNNNGC 1 cut(s) 1006
HpyF3I CTNAG 5 cut(s) 5, 44, 115, 501, 615
HpySE526I ACGT 4 cut(s) 676, 828, 930, 1315
Hsp92II CATG 4 cut(s) 90, 186, 289, 861
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 2 cut(s) 440, 720
LmnI GCTCC 6 cut(s) 670, 710, 730, 1065, 1205, 1331
Lsp1109I GCAGC 2 cut(s) 803, 1009
LweI GCATC 2 cut(s) 511, 1421
MaeI CTAG 2 cut(s) 497, 1016
MaeII ACGT 4 cut(s) 676, 828, 930, 1315
MaeIII GTNAC 8 cut(s) 39, 118, 469, 550, 926, 1124, 1142, 1316
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 6 cut(s) 20, 305, 457, 707, 800, 920
MhlI GDGCHC 4 cut(s) 584, 715, 727, 1429
MluCI AATT 9 cut(s) 79, 208, 385, 683, 694, 913, 1158, 1259, 1486
MlyI GAGTC 3 cut(s) 971, 1028, 1411
MmeI TCCRAC 1 cut(s) 1353
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 2 cut(s) 344, 918
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 1393
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 3 cut(s) 467, 599, 1445
Mva1269I GAATGC 1 cut(s) 1068
MvaI CCWGG 2 cut(s) 599, 1445
MwoI GCNNNNNNNGC 1 cut(s) 1006
NciI CCSGG 1 cut(s) 467
NdeI CATATG 2 cut(s) 161, 339
NdeII GATC 1 cut(s) 55
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 4 cut(s) 90, 186, 289, 861
NlaIV GGNNCC 4 cut(s) 666, 726, 1293, 1504
NmuCI GTSAC 3 cut(s) 39, 550, 926
NsiI ATGCAT 1 cut(s) 526
PaqCI CACCTGC 2 cut(s) 156, 1331
PciSI GCTCTTC 2 cut(s) 440, 720
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PctI GAATGC 1 cut(s) 1068
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 5 cut(s) 93, 515, 954, 1304, 1397
PflMI CCANNNNNTGG 1 cut(s) 1117
PkrI GCNGC 2 cut(s) 818, 999
PleI GAGTC 3 cut(s) 970, 1027, 1411
PmaCI CACGTG 1 cut(s) 829
PmlI CACGTG 1 cut(s) 829
PpsI GAGTC 3 cut(s) 970, 1027, 1411
Ppu21I YACGTR 1 cut(s) 829
PsiI TTATAA 3 cut(s) 383, 986, 1107
Psp124BI GAGCTC 1 cut(s) 715
Psp6I CCWGG 2 cut(s) 597, 1443
PspCI CACGTG 1 cut(s) 829
PspGI CCWGG 2 cut(s) 597, 1443
PspN4I GGNNCC 4 cut(s) 666, 726, 1293, 1504
PvuII CAGCTG 1 cut(s) 1393
RsaI GTAC 4 cut(s) 317, 563, 825, 845
RsaNI GTAC 4 cut(s) 316, 562, 824, 844
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 715
SapI GCTCTTC 2 cut(s) 440, 720
SaqAI TTAA 2 cut(s) 344, 918
SatI GCNGC 2 cut(s) 817, 998
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 3 cut(s) 971, 1028, 1411
ScrFI CCNGG 3 cut(s) 467, 599, 1445
SduI GDGCHC 4 cut(s) 584, 715, 727, 1429
SfaNI GCATC 2 cut(s) 511, 1421
SfcI CTRYAG 2 cut(s) 750, 1024
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 9 cut(s) 79, 208, 385, 683, 694, 913, 1158, 1259, 1486
SsiI CCGC 3 cut(s) 201, 494, 1007
SspMI CTAG 2 cut(s) 497, 1016
SstI GAGCTC 1 cut(s) 715
StyD4I CCNGG 3 cut(s) 465, 597, 1443
StyI CCWWGG 2 cut(s) 247, 1403
TaaI ACNGT 2 cut(s) 154, 1085
TaiI ACGT 4 cut(s) 679, 831, 933, 1318
TaqI TCGA 7 cut(s) 240, 333, 774, 796, 1137, 1429, 1494
TasI AATT 9 cut(s) 79, 208, 385, 683, 694, 913, 1158, 1259, 1486
TatI WGTACW 3 cut(s) 315, 561, 823
TfiI GAWTC 5 cut(s) 93, 515, 954, 1304, 1397
Tru1I TTAA 2 cut(s) 344, 918
Tru9I TTAA 2 cut(s) 344, 918
TscAI CASTG 1 cut(s) 1482
TseFI GTSAC 3 cut(s) 39, 550, 926
TseI GCWGC 2 cut(s) 816, 997
Tsp45I GTSAC 3 cut(s) 39, 550, 926
TspGWI ACGGA 3 cut(s) 577, 723, 966
TspRI CASTG 1 cut(s) 1482
Van91I CCANNNNNTGG 1 cut(s) 1117
XapI RAATTY 4 cut(s) 385, 694, 913, 1259
XmiI GTMKAC 1 cut(s) 763
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 2 cut(s) 497, 1016
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.