Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0022006

Physical Location & Seq

Genomic Coordinates Reverse (-)

4219057 .. 4221147

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG060100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAAGCTTGTATTATGGACGGCACTAAGAGATGTGGAGCTGTTTCTGGCCTCACTACTGTAGTCAATCCCATATCTTTGGCCAGATTGGTCATGGAGAACACTCCTCATATCTATCTCGCTTTTGATGGAGCTGAGGCCTTTGCTAGGGAACAAGGCGTTGAGTGTGTAGATGCTAATAGCTTCATTACCGCGGAGAATGTTGAGAGGCTAAAGCAGGCAAAAGAGGCCAACAGAGTGCAGATTGATTATACACAACCGATTAAGAAATATGTGAAGGAAGAAACACCAGAAGCTGATGGTGATAGCCAGCTTGGAACTGTTGGATGTGTGGCTGTTGATGATCTTGGGAATTTAGCTTCTGCAACTTCAACAGGCGGATTAGTCAACAAGATGGTTGGCCGGATTGGGGACACACCTATTATCGGTGCAGGGACGTACGCCAACAACCTTTGTGCAGTTTCTGCCACTGGCAAAGGTGAAGCAATAATCCGGAGTACAGCTGCGAGGGATGTGGCAGCTTTTATGGAGTACAAAGGTGTTTCTCTCAAAGAGGCTGCAGCTTTTGTTGTGGAGGAGAGCACTCCAAAAGGCAATGTAGGCTTGGTTGCTGTATCTGCCAAAGGAGATGTCACAATGCCTTTCAATACAACAGGGATGTTTCGAGCTTGCGCTACTGAGGATGGGTATTGGGAGATTGGAATATGGCCTTCTGATGTGCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004067 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0010033 GO:0010035 GO:0012505 GO:0016787 GO:0016810 GO:0016811 GO:0019538 GO:0030163 GO:0033993 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070001 GO:0070011 GO:0071704 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

242

Amino Acids

25.51

Weight (kDa)

4.76

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asparaginase_2	PF01112	1 - 234	7e-85	Asparaginase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0022006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08100
prunus_persica	Prupe.5G209200_v2.0.a1 Prupe.5G209200_v2.0.a1
rosa_samantha	Rh7AG060100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	3 cut(s)	192, 194, 378
AcoI	YGGCCR	2 cut(s)	81, 400
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	3 cut(s)	440, 499, 533
AfiI	CCNNNNNNNGG	3 cut(s)	147, 409, 425
AgsI	TTSAA	2 cut(s)	372, 646
Alw21I	GWGCWC	1 cut(s)	584
AlwNI	CAGNNNCTG	2 cut(s)	296, 464
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	6 cut(s)	49, 81, 138, 228, 400, 707
ApeKI	GCWGC	4 cut(s)	503, 518, 557, 560
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AspLEI	GCGC	1 cut(s)	674
AsuHPI	GGTGA	2 cut(s)	314, 491
BalI	TGGCCA	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	584
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	490, 530, 544, 572
BccI	CCATC	4 cut(s)	122, 293, 388, 677
BceAI	ACGGC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	2 cut(s)	60, 558
BisI	GCNGC	4 cut(s)	504, 519, 558, 561
BlsI	GCNGC	4 cut(s)	505, 520, 559, 562
BmsI	GCATC	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 409, 425
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	601
BseAI	TCCGGA	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	4 cut(s)	332, 517, 663, 688
BseLI	CCNNNNNNNGG	3 cut(s)	147, 409, 425
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	2 cut(s)	126, 669
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	2 cut(s)	96, 590
BseXI	GCAGC	4 cut(s)	490, 530, 544, 572
BsgI	GTGCAG	3 cut(s)	260, 450, 477
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	6 cut(s)	51, 83, 140, 230, 402, 709
BsiHKAI	GWGCWC	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	403, 493
BsiWI	CGTACG	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	425, 448
BslI	CCNNNNNNNGG	3 cut(s)	147, 409, 425
BsmFI	GGGAC	2 cut(s)	425, 448
BsnI	GGCC	6 cut(s)	51, 83, 140, 230, 402, 709
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp13I	TCCGGA	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	3 cut(s)	192, 194, 378
BspANI	GGCC	6 cut(s)	51, 83, 140, 230, 402, 709
BspCNI	CTCAG	2 cut(s)	127, 670
BspEI	TCCGGA	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	194
BspMAI	CTGCAG	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	61, 322
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	219, 311, 670
BstDEI	CTNAG	3 cut(s)	27, 135, 678
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	145
BstF5I	GGATG	4 cut(s)	332, 517, 663, 688
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 464, 600, 617
BstSFI	CTRYAG	2 cut(s)	60, 558
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	490, 530, 544, 572
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	6 cut(s)	51, 83, 140, 230, 402, 709
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	4 cut(s)	332, 517, 663, 688
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	3 cut(s)	219, 311, 670
CaiI	CAGNNNCTG	2 cut(s)	296, 464
CfoI	GCGC	1 cut(s)	674
Cfr42I	CCGCGG	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	439, 498, 532
CviAII	CATG	1 cut(s)	94
CviQI	GTAC	3 cut(s)	439, 498, 532
DdeI	CTNAG	3 cut(s)	27, 135, 678
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	81, 400
EciI	GGCGGA	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	145
FaeI	CATG	1 cut(s)	97
FaiI	YATR	8 cut(s)	17, 74, 95, 111, 252, 273, 527, 706
FaqI	GGGAC	2 cut(s)	425, 448
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	504, 519, 558, 561
FokI	GGATG	4 cut(s)	339, 524, 670, 695
Fsp4HI	GCNGC	4 cut(s)	504, 519, 558, 561
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	4 cut(s)	504, 519, 558, 561
HaeIII	GGCC	6 cut(s)	51, 83, 140, 230, 402, 709
HapII	CCGG	2 cut(s)	403, 493
HhaI	GCGC	1 cut(s)	674
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	6
HpaII	CCGG	2 cut(s)	403, 493
HphI	GGTGA	2 cut(s)	314, 491
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	715
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	271, 720
HpyCH4III	ACNGT	2 cut(s)	61, 322
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	6 cut(s)	241, 365, 431, 458, 560, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 464, 600, 617
HpyF3I	CTNAG	3 cut(s)	27, 135, 678
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	672
Kpn2I	TCCGGA	1 cut(s)	492
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	38, 131
Lsp1109I	GCAGC	4 cut(s)	490, 530, 544, 572
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	584
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	352
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	9 cut(s)	62, 117, 130, 201, 220, 501, 547, 568, 673
Mox20I	TGGCCA	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	194, 503
MspI	CCGG	2 cut(s)	403, 493
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	227, 464, 600, 617
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	140
Pfl23II	CGTACG	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	505, 520, 559, 562
PspLI	CGTACG	1 cut(s)	438
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	2 cut(s)	296, 464
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	3 cut(s)	440, 499, 533
RsaNI	GTAC	3 cut(s)	439, 498, 532
SacII	CCGCGG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	504, 519, 558, 561
Sau3AI	GATC	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	584
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	2 cut(s)	60, 558
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	352
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	3 cut(s)	192, 194, 378
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	140
TaaI	ACNGT	2 cut(s)	61, 322
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	664
TasI	AATT	1 cut(s)	352
TatI	WGTACW	2 cut(s)	497, 531
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	4 cut(s)	503, 518, 557, 560
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	475
XagI	CCTNNNNNAGG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.