Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017149

Physical Location & Seq

Genomic Coordinates Reverse (-)

2592976 .. 2594701

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTGGGGTGGGCGATTGCGCTACACGGCGGTGCCGGAGACATTCCGATCGATCTCCCCGACGAGCGACGTATCCCTCGTGAGAGCGCCCTCCGTCACTGCCTCGATCTTGGCATCTCCGCCCTCAAATCCGGCAAGCCTCCCTTGGACGTCGCCGAACTTGTCGTTCGTGAACTTGAGAACCACCCGGACTTCAATGCGGGTAAAGGATCTGTCTTAACTGCACAAGGCACTGTTGAAATGGAAGCTTCCATTATGGACGGTAAAACCAAAAGATGTGGAGCTGTCTCCGGCTTGACCACTGTTGTTAATCCCATTTCTTTAGCTCGCCTCGTCATGGAGAAAACTCCTCATATATATCTTGCATTCGATGCTGCTGAAGCTTTTGCAAGAGCACATGGTGTTGAGACGGTAGATTCTAGCCATTTCATAACTCCTGAAAACATTGCAAGGCTAAAGCAGGCCAAAGAATTCAATCGAGTCCAGTTGGATTACACAGTCCCTAGTCCGAAAGTACCGGACAATTGCGGTGACAGCCAAATAGGAACGGTCGGATGTGTAGCTGTGGACAGTGCTGGAAATCTAGCTTCGGCTACATCAACGGGCGGTTATGTCAACAAAATGGTTGGCAGAATTGGGGATACGCCAGTCATTGGCGCAGGAACTTACGCTAACCACCTTTGTGCCATCTCAGCCACAGGTAAAGGAGAGGATATCATCCGTGGAACCGTGGCTAGAGACGTGGCTGCACTCATGGAATATAAAGGCTTGTCTTTGACTGAGGCAGCGGCTTATGTTGTTGACCAATCTGTTCCCAGAGGAAGCTGTGGACTCGTTGCTGTCTCTGCCAATGGTGAAGTCACAATGCCGTTTAACACTACCGGAATGTTCAGGGCTTGTGCTAGCGAAGATGGTTACTCTGAGATCGCAATCTGGCCAAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004067 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0010033 GO:0010035 GO:0012505 GO:0016787 GO:0016810 GO:0016811 GO:0019538 GO:0030163 GO:0033993 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070001 GO:0070011 GO:0071704 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

315

Amino Acids

33.03

Weight (kDa)

5.3

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asparaginase_2	PF01112	3 - 311	2e-116	Asparaginase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08100
fragaria_vesca	FvH4_5g13420
malus_domestica	MD06G1205300.v1.1 MD06G1205500.v1.1
prunus_persica	Prupe.5G209700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0183691
rosa_laevigata	RLG00000005032
rosa_multiflora	Rmu_sc0003610.1_g000026
rosa_roxburghii	Rroxscaffold_3G00270320
rosa_rugosa	Rorug06G0459400
rosa_samantha	Rh7BG060300 Rh7DG060200
rosa_wichuraiana	Rw7G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	653
AciI	CCGC	6 cut(s)	30, 120, 200, 528, 606, 788
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	935
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	337, 653
AgsI	TTSAA	3 cut(s)	196, 239, 475
AjiI	CACGTC	1 cut(s)	742
AleI	CACNNNNGTG	2 cut(s)	30, 681
AluBI	AGCT	7 cut(s)	248, 284, 326, 383, 563, 587, 825
AluI	AGCT	7 cut(s)	248, 284, 326, 383, 563, 587, 825
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	5 cut(s)	33, 292, 401, 732, 847
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	462, 935
ApeKI	GCWGC	3 cut(s)	374, 746, 785
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	3 cut(s)	22, 89, 659
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	542, 866
AsuNHI	GCTAGC	1 cut(s)	902
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BalI	TGGCCA	1 cut(s)	937
BanI	GGYRCC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	361, 733, 797
BccI	CCATC	2 cut(s)	695, 905
BceAI	ACGGC	2 cut(s)	43, 853
BciVI	GTATCC	2 cut(s)	83, 634
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	5 cut(s)	33, 292, 401, 732, 847
BfaI	CTAG	5 cut(s)	420, 504, 584, 735, 903
BfoI	RGCGCY	1 cut(s)	90
BfuI	GTATCC	2 cut(s)	83, 634
BisI	GCNGC	4 cut(s)	375, 747, 786, 789
BlsI	GCNGC	4 cut(s)	376, 748, 787, 790
Bme1390I	CCNGG	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	742
BmiI	GGNNCC	2 cut(s)	34, 727
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	123, 361
BmtI	GCTAGC	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	929
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	144, 721, 729
BsaWI	WCCGGW	2 cut(s)	517, 881
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 653
Bse1I	ACTGG	2 cut(s)	484, 647
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	929
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	144, 721, 729
BseGI	GGATG	2 cut(s)	560, 717
BseJI	GATNNNNATC	1 cut(s)	929
BseLI	CCNNNNNNNGG	2 cut(s)	337, 653
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	705, 771, 912
BseNI	ACTGG	2 cut(s)	484, 647
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	361, 733, 797
BsgI	GTGCAG	2 cut(s)	207, 732
Bsh1285I	CGRYCG	2 cut(s)	51, 552
BshFI	GGCC	2 cut(s)	464, 937
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	51
BsiEI	CGRYCG	2 cut(s)	51, 552
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	6 cut(s)	36, 132, 188, 291, 518, 882
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	337, 653
BsmAI	GTCTC	5 cut(s)	33, 292, 401, 732, 847
BsmBI	CGTCTC	2 cut(s)	401, 732
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	464, 937
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	48, 52, 106, 209, 924
BspACI	CCGC	6 cut(s)	30, 120, 200, 528, 606, 788
BspANI	GGCC	2 cut(s)	464, 937
BspCNI	CTCAG	3 cut(s)	704, 772, 913
BspDI	ATCGAT	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	34, 727
BspOI	GCTAGC	1 cut(s)	906
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	484, 647
BssECI	CCNNGG	3 cut(s)	144, 721, 729
BssMI	GATC	5 cut(s)	48, 52, 106, 209, 924
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	8 cut(s)	235, 263, 304, 412, 499, 550, 572, 730
BstACI	GRCGYC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	4 cut(s)	137, 328, 462, 904
BstDEI	CTNAG	3 cut(s)	691, 780, 921
BstDSI	CCRYGG	2 cut(s)	721, 729
BstF5I	GGATG	2 cut(s)	560, 717
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	3 cut(s)	22, 89, 659
BstKTI	GATC	5 cut(s)	51, 55, 109, 212, 927
BstMAI	GTCTC	5 cut(s)	33, 292, 401, 732, 847
BstMBI	GATC	5 cut(s)	48, 52, 106, 209, 924
BstMCI	CGRYCG	2 cut(s)	51, 552
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 380, 534, 692, 845
BstSCI	CCNGG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	361, 733, 797
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	51
BsuI	GTATCC	2 cut(s)	83, 634
BsuRI	GGCC	2 cut(s)	464, 937
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	2 cut(s)	721, 729
BtrI	CACGTC	1 cut(s)	742
BtsCI	GGATG	2 cut(s)	560, 717
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	4 cut(s)	97, 231, 300, 577
Cac8I	GCNNGC	4 cut(s)	137, 328, 462, 904
CfoI	GCGC	3 cut(s)	22, 89, 659
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	515
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	3 cut(s)	337, 398, 754
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	3 cut(s)	691, 780, 921
DpnI	GATC	5 cut(s)	50, 54, 108, 211, 926
DpnII	GATC	5 cut(s)	48, 52, 106, 209, 924
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	935
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	2 cut(s)	401, 732
FaeI	CATG	3 cut(s)	340, 401, 757
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	3 cut(s)	336, 397, 753
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	375, 747, 786, 789
FokI	GGATG	2 cut(s)	567, 704
Fsp4HI	GCNGC	4 cut(s)	375, 747, 786, 789
FspBI	CTAG	5 cut(s)	420, 504, 584, 735, 903
GlaI	GCGC	3 cut(s)	21, 88, 658
GluI	GCNGC	4 cut(s)	375, 747, 786, 789
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	464, 937
HapII	CCGG	6 cut(s)	36, 132, 188, 291, 518, 882
HhaI	GCGC	3 cut(s)	22, 89, 659
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	340, 401, 757
Hin6I	GCGC	3 cut(s)	20, 87, 657
HinP1I	GCGC	3 cut(s)	20, 87, 657
HincII	GTYRAC	2 cut(s)	616, 802
HindII	GTYRAC	2 cut(s)	616, 802
HindIII	AAGCTT	2 cut(s)	246, 381
HinfI	GANTC	3 cut(s)	416, 480, 831
HpaII	CCGG	6 cut(s)	36, 132, 188, 291, 518, 882
HphI	GGTGA	2 cut(s)	542, 866
Hpy166II	GTNNAC	5 cut(s)	173, 568, 616, 802, 830
Hpy188I	TCNGA	4 cut(s)	48, 510, 554, 922
Hpy188III	TCNNGA	3 cut(s)	80, 170, 437
Hpy8I	GTNNAC	5 cut(s)	173, 568, 616, 802, 830
Hpy99I	CGWCG	3 cut(s)	65, 72, 155
HpyCH4III	ACNGT	8 cut(s)	235, 263, 304, 412, 499, 550, 572, 730
HpyCH4IV	ACGT	3 cut(s)	70, 150, 741
HpyCH4V	TGCA	5 cut(s)	224, 365, 389, 449, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 380, 534, 692, 845
HpyF3I	CTNAG	3 cut(s)	691, 780, 921
HpySE526I	ACGT	3 cut(s)	70, 150, 741
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	340, 401, 757
HspAI	GCGC	3 cut(s)	20, 87, 657
Kzo9I	GATC	5 cut(s)	48, 52, 106, 209, 924
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	3 cut(s)	361, 733, 797
LweI	GCATC	2 cut(s)	123, 361
MaeI	CTAG	5 cut(s)	420, 504, 584, 735, 903
MaeII	ACGT	3 cut(s)	70, 150, 741
MaeIII	GTNAC	4 cut(s)	95, 530, 859, 914
MalI	GATC	5 cut(s)	50, 54, 108, 211, 926
MboI	GATC	5 cut(s)	48, 52, 106, 209, 924
MboII	GAAGA	1 cut(s)	920
MfeI	CAATTG	2 cut(s)	523, 943
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	937
MluCI	AATT	4 cut(s)	470, 523, 633, 943
MluNI	TGGCCA	1 cut(s)	937
MlyI	GAGTC	2 cut(s)	489, 825
MmeI	TCCRAC	2 cut(s)	468, 532
Mox20I	TGGCCA	1 cut(s)	937
MscI	TGGCCA	1 cut(s)	937
MseI	TTAA	3 cut(s)	218, 309, 873
MslI	CAYNNNNRTG	2 cut(s)	30, 681
Msp20I	TGGCCA	1 cut(s)	937
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	6 cut(s)	36, 132, 188, 291, 518, 882
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	2 cut(s)	523, 943
Mva1269I	GAATGC	1 cut(s)	365
MwoI	GCNNNNNNNGC	5 cut(s)	371, 380, 534, 692, 845
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	5 cut(s)	48, 52, 106, 209, 924
NheI	GCTAGC	1 cut(s)	902
NlaIII	CATG	3 cut(s)	340, 401, 757
NlaIV	GGNNCC	2 cut(s)	34, 727
NmuCI	GTSAC	3 cut(s)	95, 530, 859
OliI	CACNNNNGTG	2 cut(s)	30, 681
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 76
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	4 cut(s)	376, 748, 787, 790
Ple19I	CGATCG	1 cut(s)	51
PleI	GAGTC	2 cut(s)	488, 825
PpsI	GAGTC	2 cut(s)	488, 825
PspN4I	GGNNCC	2 cut(s)	34, 727
PsuI	RGATCY	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	2 cut(s)	30, 681
SaqAI	TTAA	3 cut(s)	218, 309, 873
SatI	GCNGC	4 cut(s)	375, 747, 786, 789
Sau3AI	GATC	5 cut(s)	48, 52, 106, 209, 924
SchI	GAGTC	2 cut(s)	489, 825
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	2 cut(s)	123, 361
SmiMI	CAYNNNNRTG	2 cut(s)	30, 681
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	470, 523, 633, 943
SsiI	CCGC	6 cut(s)	30, 120, 200, 528, 606, 788
SspMI	CTAG	5 cut(s)	420, 504, 584, 735, 903
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	8 cut(s)	235, 263, 304, 412, 499, 550, 572, 730
TaiI	ACGT	3 cut(s)	73, 153, 744
TaqI	TCGA	4 cut(s)	51, 105, 369, 478
TasI	AATT	4 cut(s)	470, 523, 633, 943
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	218, 309, 873
Tru9I	TTAA	3 cut(s)	218, 309, 873
TscAI	CASTG	4 cut(s)	104, 238, 307, 577
TseFI	GTSAC	3 cut(s)	95, 530, 859
TseI	GCWGC	3 cut(s)	374, 746, 785
Tsp45I	GTSAC	3 cut(s)	95, 530, 859
TspDTI	ATGAA	1 cut(s)	418
TspGWI	ACGGA	2 cut(s)	83, 710
TspRI	CASTG	4 cut(s)	104, 238, 307, 577
Van91I	CCANNNNNTGG	1 cut(s)	653
XapI	RAATTY	1 cut(s)	470
XspI	CTAG	5 cut(s)	420, 504, 584, 735, 903
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.