Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0017149

Physical Location & Seq

Genomic Coordinates Reverse (-)

104208 .. 105671

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003610.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggggtgggccatcgcactccacggcggcgccggcgacatcccgctctctcttccgccggagcgccgccagcctcgcgaggccgccctccgccactgcctccagatcggcgtcgaagctctcaaggccaacaagcctcctctcgacgtcgtcgagcttgtggttcgtgagctggagaatattccggtgttcaacgccggaaaggggtctgtgttgaccagcagcggcacggtggagatggaagcttgtattatggacggcactaagagatgtggagctgtttctggcctcactactgtagtcaatcccatatctttggccagattggtcatggagaacactcctcatatctatctcgcttttgatggagctgaggcctttgctagggaacaagttagtcactacttttacttccgtcttacgagttttactgaatcgggcgttgagtgtgtagatgctaatagcttcattaccgcggagaatgttgagaggctaaagcaggcaaaagaggccaacagagtgcagattgattatacacaaccgattaagaaatatgtgaaggaagaaacaccagaagctgatggtgatagccagcttggaactgttggatgtgtggctgttgatgatcttgggaatttagcttctgcaacttcaacaggcggattagtcaacaagatggttggccggattggggacacacctattatcggtgcagggacgtatgccaacaatctttgtgcagtttctgccactggcaaaggtgaagcaataatccggagtacagctgcgagggatgtggcagcttttatggagtacaaaggtgtttctctcaaagaggctgcagcttttgttgtggaggagagcactccaaaaggcaatgtaggcttggttgctgtatctgccaaaggagatgtcacaatgcctttcaatacaacagggatgtttcgagcttgcgctactgaggatgggtattgggagattggaatatggccttctgatgtgcaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004067 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0010033 GO:0010035 GO:0012505 GO:0016787 GO:0016810 GO:0016811 GO:0019538 GO:0030163 GO:0033993 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070001 GO:0070011 GO:0071704 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

336

Amino Acids

35.75

Weight (kDa)

5.06

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08100
fragaria_vesca	FvH4_5g13420
malus_domestica	MD06G1205300.v1.1 MD06G1205500.v1.1
prunus_persica	Prupe.5G209700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0183691
rosa_laevigata	RLG00000005032
rosa_multiflora	Rmu_sc0003610.1_g000026
rosa_roxburghii	Rroxscaffold_3G00270320
rosa_rugosa	Rorug06G0459400
rosa_samantha	Rh7BG060300 Rh7DG060200
rosa_wichuraiana	Rw7G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	2 cut(s)	78, 476
AccIII	TCCGGA	1 cut(s)	774
AcoI	YGGCCR	2 cut(s)	318, 682
AcsI	RAATTY	1 cut(s)	634
AcyI	GRCGYC	3 cut(s)	30, 111, 147
AfaI	GTAC	2 cut(s)	781, 815
AfiI	CCNNNNNNNGG	4 cut(s)	204, 384, 691, 707
AgsI	TTSAA	3 cut(s)	193, 654, 928
Alw21I	GWGCWC	1 cut(s)	866
AlwNI	CAGNNNCTG	2 cut(s)	578, 746
Aor13HI	TCCGGA	1 cut(s)	774
AoxI	GGCC	9 cut(s)	9, 81, 126, 286, 318, 375, 510, 682, 989
ApeKI	GCWGC	5 cut(s)	222, 785, 800, 839, 842
ApoI	RAATTY	1 cut(s)	634
ArsI	GACNNNNNNTTYG	2 cut(s)	897, 929
AspLEI	GCGC	3 cut(s)	32, 66, 956
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	596, 773
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	866
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	5 cut(s)	234, 772, 812, 826, 854
BccI	CCATC	6 cut(s)	20, 232, 359, 575, 670, 959
BceAI	ACGGC	2 cut(s)	40, 274
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	2 cut(s)	297, 840
BfoI	RGCGCY	2 cut(s)	33, 67
BisI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 786, 801, 840, 843
BlsI	GCNGC	9 cut(s)	29, 68, 85, 224, 227, 787, 802, 841, 844
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	2 cut(s)	86, 194
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	3 cut(s)	30, 111, 147
BsaJI	CCNNGG	2 cut(s)	22, 474
BsaWI	WCCGGW	2 cut(s)	184, 774
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 384, 691, 707
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	757
Bse3DI	GCAATG	1 cut(s)	883
BseAI	TCCGGA	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	22, 474
BseGI	GGATG	5 cut(s)	39, 614, 799, 945, 970
BseLI	CCNNNNNNNGG	4 cut(s)	204, 384, 691, 707
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	2 cut(s)	363, 951
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	3 cut(s)	129, 333, 872
BseXI	GCAGC	5 cut(s)	234, 772, 812, 826, 854
BsgI	GTGCAG	3 cut(s)	542, 732, 759
Bsh1236I	CGCG	2 cut(s)	78, 476
BshFI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 512, 684, 991
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	866
BsiSI	CCGG	6 cut(s)	33, 59, 185, 198, 685, 775
BslFI	GGGAC	2 cut(s)	707, 730
BslI	CCNNNNNNNGG	4 cut(s)	204, 384, 691, 707
BsmFI	GGGAC	2 cut(s)	707, 730
BsnI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 512, 684, 991
Bsp1286I	GDGCHC	1 cut(s)	866
Bsp13I	TCCGGA	1 cut(s)	774
Bsp143I	GATC	2 cut(s)	105, 625
Bsp68I	TCGCGA	1 cut(s)	78
BspANI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 512, 684, 991
BspCNI	CTCAG	2 cut(s)	364, 952
BspEI	TCCGGA	1 cut(s)	774
BspFNI	CGCG	2 cut(s)	78, 476
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	844
BspT107I	GGYRCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	757
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	22, 474
BssMI	GATC	2 cut(s)	105, 625
BssNI	GRCGYC	3 cut(s)	30, 111, 147
Bst4CI	ACNGT	3 cut(s)	232, 298, 604
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	3 cut(s)	30, 111, 147
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	5 cut(s)	34, 71, 501, 593, 952
BstDEI	CTNAG	3 cut(s)	264, 372, 960
BstDSI	CCRYGG	2 cut(s)	22, 474
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstF5I	GGATG	5 cut(s)	39, 614, 799, 945, 970
BstFNI	CGCG	2 cut(s)	78, 476
BstH2I	RGCGCY	2 cut(s)	33, 67
BstHHI	GCGC	3 cut(s)	32, 66, 956
BstKTI	GATC	2 cut(s)	108, 628
BstMBI	GATC	2 cut(s)	105, 625
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 70, 75, 125, 509, 746, 882, 899
BstSFI	CTRYAG	2 cut(s)	297, 840
BstUI	CGCG	2 cut(s)	78, 476
BstV1I	GCAGC	5 cut(s)	234, 772, 812, 826, 854
BstXI	CCANNNNNNTGG	1 cut(s)	316
BsuRI	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 512, 684, 991
BtgI	CCRYGG	2 cut(s)	22, 474
BtsCI	GGATG	5 cut(s)	39, 614, 799, 945, 970
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 750
BtuMI	TCGCGA	1 cut(s)	78
Cac8I	GCNNGC	5 cut(s)	34, 71, 501, 593, 952
CaiI	CAGNNNCTG	2 cut(s)	578, 746
CfoI	GCGC	3 cut(s)	32, 66, 956
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	9
Cfr42I	CCGCGG	1 cut(s)	477
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	780, 814
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	2 cut(s)	780, 814
DdeI	CTNAG	3 cut(s)	264, 372, 960
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	2 cut(s)	107, 627
DpnII	GATC	2 cut(s)	105, 625
EaeI	YGGCCR	2 cut(s)	318, 682
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	3 cut(s)	45, 80, 675
Eco147I	AGGCCT	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
FaeI	CATG	1 cut(s)	334
FaiI	YATR	9 cut(s)	254, 311, 332, 348, 534, 555, 723, 809, 988
FaqI	GGGAC	2 cut(s)	707, 730
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 786, 801, 840, 843
FokI	GGATG	5 cut(s)	26, 621, 806, 952, 977
Fsp4HI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 786, 801, 840, 843
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	3 cut(s)	31, 65, 955
GluI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 786, 801, 840, 843
GsuI	CTGGAG	2 cut(s)	86, 194
HaeII	RGCGCY	2 cut(s)	33, 67
HaeIII	GGCC	9 cut(s)	11, 83, 128, 288, 320, 377, 512, 684, 991
HapII	CCGG	6 cut(s)	33, 59, 185, 198, 685, 775
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	3 cut(s)	32, 66, 956
Hin1I	GRCGYC	3 cut(s)	30, 111, 147
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	3 cut(s)	30, 64, 954
HinP1I	GCGC	3 cut(s)	30, 64, 954
HincII	GTYRAC	2 cut(s)	216, 670
HindII	GTYRAC	2 cut(s)	216, 670
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	6 cut(s)	33, 59, 185, 198, 685, 775
HphI	GGTGA	2 cut(s)	596, 773
Hpy166II	GTNNAC	2 cut(s)	216, 670
Hpy188I	TCNGA	1 cut(s)	997
Hpy188III	TCNNGA	5 cut(s)	77, 103, 143, 167, 775
Hpy8I	GTNNAC	2 cut(s)	216, 670
Hpy99I	CGWCG	4 cut(s)	116, 149, 152, 155
HpyAV	CCTTC	2 cut(s)	553, 1002
HpyCH4III	ACNGT	3 cut(s)	232, 298, 604
HpyCH4IV	ACGT	2 cut(s)	147, 719
HpyCH4V	TGCA	6 cut(s)	523, 647, 713, 740, 842, 1003
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 70, 75, 125, 509, 746, 882, 899
HpyF3I	CTNAG	3 cut(s)	264, 372, 960
HpySE526I	ACGT	2 cut(s)	147, 719
Hsp92I	GRCGYC	3 cut(s)	30, 111, 147
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	3 cut(s)	30, 64, 954
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	774
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
KspI	CCGCGG	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	105, 625
LmnI	GCTCC	3 cut(s)	61, 275, 368
Lsp1109I	GCAGC	5 cut(s)	234, 772, 812, 826, 854
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	147, 719
MaeIII	GTNAC	2 cut(s)	398, 913
MalI	GATC	2 cut(s)	107, 627
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	2 cut(s)	105, 625
MboII	GAAGA	2 cut(s)	44, 575
MhlI	GDGCHC	1 cut(s)	866
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	1 cut(s)	634
MluNI	TGGCCA	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	586
Mox20I	TGGCCA	1 cut(s)	320
MreI	CGCCGGCG	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	774
MroNI	GCCGGC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	3 cut(s)	225, 476, 785
MspI	CCGG	6 cut(s)	33, 59, 185, 198, 685, 775
MvnI	CGCG	2 cut(s)	78, 476
MwoI	GCNNNNNNNGC	8 cut(s)	33, 70, 75, 125, 509, 746, 882, 899
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	30
NdeII	GATC	2 cut(s)	105, 625
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	398, 913
NruI	TCGCGA	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	434
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	9 cut(s)	29, 68, 85, 224, 227, 787, 802, 841, 844
PluTI	GGCGCC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	844
PstNI	CAGNNNCTG	2 cut(s)	578, 746
PsyI	GACNNNGTC	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	785
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	2 cut(s)	781, 815
RsaNI	GTAC	2 cut(s)	780, 814
SacII	CCGCGG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	9 cut(s)	28, 67, 84, 223, 226, 786, 801, 840, 843
Sau3AI	GATC	2 cut(s)	105, 625
Sau96I	GGNCC	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	866
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	2 cut(s)	297, 840
SfoI	GGCGCC	1 cut(s)	31
Sfr303I	CCGCGG	1 cut(s)	477
SgrAI	CRCCGGYG	1 cut(s)	32
SgrBI	CCGCGG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	634
SseBI	AGGCCT	1 cut(s)	377
SspDI	GGCGCC	1 cut(s)	29
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	377
TaaI	ACNGT	3 cut(s)	232, 298, 604
TaiI	ACGT	2 cut(s)	150, 722
TaqI	TCGA	4 cut(s)	114, 144, 153, 946
TasI	AATT	1 cut(s)	634
TatI	WGTACW	2 cut(s)	779, 813
TauI	GCSGC	4 cut(s)	30, 69, 86, 228
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	101, 757
TseFI	GTSAC	2 cut(s)	398, 913
TseI	GCWGC	5 cut(s)	222, 785, 800, 839, 842
Tsp45I	GTSAC	2 cut(s)	398, 913
TspDTI	ATGAA	1 cut(s)	457
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	2 cut(s)	101, 757
Tth111I	GACNNNGTC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	384
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.