Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0024931

Physical Location & Seq

Genomic Coordinates Forward (+)

5365523 .. 5367345

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAGGCCAGGGTTTCCATCTCTGCACCAGGCGTTCTCCTCCTCCGCCTTTGGAAGAATTATCCTGCATTTTTGGAGGATAAATCACTAATTCCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCTTAGTTTCTGGCTGTAAACAAGAGATGGTTAAAACATCATCACAACTTAGGACGAAAACAGCAAAGCTGAAGAAGCGAAACAGAATAAGACAGATAAGATCTACAACCGATAGAAAGATTCATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

98

Amino Acids

11.35

Weight (kDa)

10.58

Isoelectric Point (pI)

63.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	31 - 63	4.2e-09	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024931)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456061 RchiOBHm_Chr7g0198731
rosa_samantha	Rh7AG075300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	8, 28
AluBI	AGCT	2 cut(s)	125, 235
AluI	AGCT	2 cut(s)	125, 235
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	6
BccI	CCATC	2 cut(s)	26, 187
BciT130I	CCWGG	2 cut(s)	10, 30
BfaI	CTAG	1 cut(s)	126
BglII	AGATCT	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	10, 30
BmrFI	CCNGG	2 cut(s)	10, 30
BpuEI	CTTGAG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	10, 30
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	29, 32
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	128, 145, 266
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	3 cut(s)	128, 145, 266
Bst2UI	CCWGG	2 cut(s)	10, 30
BstDEI	CTNAG	2 cut(s)	169, 215
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	131, 148, 269
BstMBI	GATC	3 cut(s)	128, 145, 266
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	10, 30
BstSCI	CCNGG	2 cut(s)	8, 28
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	114
CviJI	RGCY	4 cut(s)	8, 125, 180, 235
CviKI_1	RGCY	4 cut(s)	8, 125, 180, 235
DdeI	CTNAG	2 cut(s)	169, 215
DpnI	GATC	3 cut(s)	130, 147, 268
DpnII	GATC	3 cut(s)	128, 145, 266
EciI	GGCGGA	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	8, 28
FaiI	YATR	2 cut(s)	144, 156
FokI	GGATG	1 cut(s)	121
FspBI	CTAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	100, 185
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	100, 185
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	26, 68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	169, 215
Kzo9I	GATC	3 cut(s)	128, 145, 266
LpnPI	CCDG	7 cut(s)	15, 22, 42, 78, 91, 108, 162
MaeI	CTAG	1 cut(s)	126
MalI	GATC	3 cut(s)	130, 147, 268
MboI	GATC	3 cut(s)	128, 145, 266
MboII	GAAGA	2 cut(s)	67, 250
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	2 cut(s)	58, 90
MnlI	CCTC	4 cut(s)	50, 53, 70, 113
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	10, 30
MvaI	CCWGG	2 cut(s)	10, 30
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	3 cut(s)	128, 145, 266
PfeI	GAWTC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	8, 28
PspGI	CCWGG	2 cut(s)	8, 28
PsuI	RGATCY	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	128, 145, 266
ScrFI	CCNGG	2 cut(s)	10, 30
SetI	ASST	4 cut(s)	105, 127, 162, 237
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	58, 90
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	8, 28
TasI	AATT	2 cut(s)	58, 90
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	125, 278
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.