Rh7AG181300

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0033680
Physical Location & Seq
Reverse (-)
16108765 .. 16122775
14011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG181300.1

Sequence Viewer

Length: 588 bp
ATGATCGTCTACGATCATTACCAGAACGGAAGCTTGGACCGATGGCTGTTTGGGCTTGGAACACTCCCATGGACGTGGCGGCTCAAGCTCATCAAAGACATAGCAGAAGCTCTAAGTTTCCTCCACTCCAAACAACTCGCTCATGGAAACTTAAACACAAGCACTATCTTCCTCGACGTGAACTACCGGGCCGTTGTTGGAGACTACCGGTTCGGATTCTTTTCGGGTTTGTCGGGTCGAGATGACCCGGTTTCTGGTATGAGAGCGGATGTGTTCGGGTTTGGAATGTTGATTTTGGAAATTGTAACTGGTAAAAAAGAGGAGGAGGTTGGAGTTGAAGAGGTGGGTCTTTCAGGGTTTGTAGGGGAAATGCATGGGAAGGGAGAGATGGTGAAGGTTGTGGATGAGAGATTGGGAGACCGGGTTAACTGGGAGGAAGCGTGTCGGGTTTTGAAAATTGGGCTGAGTTGCACCACTCTTTACTTGCTTCTGTGTGGAGCATCAAGAAATTTTGGGGTCTATGTGAAGCAGACCCCAAAAGTTCGAACCTCTGAGTTTTGGGTGTACTTCAATTCTTTGAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase_Tyr

Protein Analysis

195

Amino Acids

22.04

Weight (kDa)

6.91

Isoelectric Point (pI)

20.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 69 3.7e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033680)

Species Orthologous Gene IDs
rosa_samantha Rh7AG181300 Rh7CG190800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 9
AciI CCGC 2 cut(s) 79, 266
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 1 cut(s) 254
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 4 cut(s) 338, 454, 571, 580
AjiI CACGTC 2 cut(s) 75, 178
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 3 cut(s) 33, 88, 110
AluI AGCT 3 cut(s) 33, 88, 110
Alw26I GTCTC 2 cut(s) 195, 411
AoxI GGCC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsiGI ACCGGT 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 37, 189
AsuC2I CCSGG 3 cut(s) 188, 248, 422
AsuHPI GGTGA 1 cut(s) 403
AsuII TTCGAA 1 cut(s) 544
AvaII GGWCC 1 cut(s) 37
BccI CCATC 2 cut(s) 36, 382
BceAI ACGGC 1 cut(s) 176
BcnI CCSGG 3 cut(s) 188, 248, 422
BcoDI GTCTC 2 cut(s) 195, 411
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 3 cut(s) 188, 248, 422
Bme18I GGWCC 1 cut(s) 37
BmgBI CACGTC 2 cut(s) 75, 178
BmgT120I GGNCC 2 cut(s) 37, 189
BmrFI CCNGG 3 cut(s) 188, 248, 422
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 439
Bpu14I TTCGAA 1 cut(s) 544
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 3 cut(s) 188, 248, 422
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 6 cut(s) 375, 405, 408, 425, 438, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 313, 434
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 274, 409
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 2 cut(s) 455, 543
BseNI ACTGG 2 cut(s) 313, 434
BseRI GAGGAG 2 cut(s) 335, 338
BshFI GGCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 207
BsiSI CCGG 4 cut(s) 187, 208, 248, 421
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 195, 411
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 544
Bsp143I GATC 2 cut(s) 3, 13
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 2 cut(s) 79, 266
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 456, 544
BspT104I TTCGAA 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 411
BsrBI CCGCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 2 cut(s) 313, 434
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 3, 13
BssT1I CCWWGG 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 333, 575
BstBI TTCGAA 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 113, 464, 552
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 274, 409
BstKTI GATC 2 cut(s) 6, 16
BstMAI GTCTC 2 cut(s) 195, 411
BstMBI GATC 2 cut(s) 3, 13
BstMWI GCNNNNNNNGC 2 cut(s) 52, 85
BstSCI CCNGG 3 cut(s) 186, 246, 420
BstXI CCANNNNNNTGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 68
BtrI CACGTC 2 cut(s) 75, 178
BtsCI GGATG 2 cut(s) 274, 409
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 37, 189
Csp6I GTAC 1 cut(s) 565
CspAI ACCGGT 1 cut(s) 207
CviAII CATG 3 cut(s) 69, 143, 374
CviJI RGCY 8 cut(s) 33, 46, 55, 82, 88, 110, 191, 463
CviKI_1 RGCY 8 cut(s) 33, 46, 55, 82, 88, 110, 191, 463
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 3 cut(s) 113, 464, 552
DpnI GATC 2 cut(s) 5, 15
DpnII GATC 2 cut(s) 3, 13
Eam1104I CTCTTC 2 cut(s) 333, 575
EarI CTCTTC 2 cut(s) 333, 575
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 3 cut(s) 72, 146, 377
FaiI YATR 6 cut(s) 70, 101, 144, 260, 375, 522
FatI CATG 3 cut(s) 68, 142, 373
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 281, 416
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 191
HapII CCGG 4 cut(s) 187, 208, 248, 421
Hin1II CATG 3 cut(s) 72, 146, 377
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 1 cut(s) 216
HpaI GTTAAC 1 cut(s) 427
HpaII CCGG 4 cut(s) 187, 208, 248, 421
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 4 cut(s) 10, 181, 427, 565
Hpy188I TCNGA 2 cut(s) 215, 553
Hpy188III TCNNGA 2 cut(s) 239, 504
Hpy8I GTNNAC 4 cut(s) 10, 181, 427, 565
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 373, 388
HpyCH4IV ACGT 2 cut(s) 74, 177
HpyCH4V TGCA 2 cut(s) 373, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 85
HpyF3I CTNAG 3 cut(s) 113, 464, 552
HpySE526I ACGT 2 cut(s) 74, 177
Hsp92II CATG 3 cut(s) 72, 146, 377
KspAI GTTAAC 1 cut(s) 427
Kzo9I GATC 2 cut(s) 3, 13
LmnI GCTCC 1 cut(s) 497
LpnPI CCDG 9 cut(s) 35, 200, 221, 240, 261, 294, 339, 415, 434
LweI GCATC 1 cut(s) 509
MaeII ACGT 2 cut(s) 74, 177
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 5, 15
MbiI CCGCTC 1 cut(s) 266
MboI GATC 2 cut(s) 3, 13
MboII GAAGA 2 cut(s) 160, 350
MluCI AATT 4 cut(s) 300, 456, 508, 571
MmeI TCCRAC 2 cut(s) 178, 310
MnlI CCTC 9 cut(s) 131, 182, 313, 316, 319, 334, 427, 559, 576
Mph1103I ATGCAT 1 cut(s) 375
MseI TTAA 2 cut(s) 152, 426
MslI CAYNNNNRTG 2 cut(s) 67, 73
MspI CCGG 4 cut(s) 187, 208, 248, 421
MspR9I CCNGG 3 cut(s) 188, 248, 422
MwoI GCNNNNNNNGC 2 cut(s) 52, 85
NciI CCSGG 3 cut(s) 188, 248, 422
NcoI CCATGG 1 cut(s) 68
NdeII GATC 2 cut(s) 3, 13
NlaIII CATG 3 cut(s) 72, 146, 377
NsiI ATGCAT 1 cut(s) 375
NspV TTCGAA 1 cut(s) 544
PfeI GAWTC 1 cut(s) 216
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 37, 189
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 2 cut(s) 67, 73
SaqAI TTAA 2 cut(s) 152, 426
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 3, 13
Sau96I GGNCC 2 cut(s) 37, 189
ScrFI CCNGG 3 cut(s) 188, 248, 422
SfaNI GCATC 1 cut(s) 509
SfuI TTCGAA 1 cut(s) 544
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 67, 73
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 4 cut(s) 300, 456, 508, 571
SsiI CCGC 2 cut(s) 79, 266
StyD4I CCNGG 3 cut(s) 186, 246, 420
StyI CCWWGG 1 cut(s) 68
TaiI ACGT 2 cut(s) 77, 180
TaqI TCGA 3 cut(s) 174, 238, 544
TaqII GACCGA 1 cut(s) 54
TasI AATT 4 cut(s) 300, 456, 508, 571
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 2 cut(s) 152, 426
Tru9I TTAA 2 cut(s) 152, 426
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.