Rh7CG190800

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0033680
Physical Location & Seq
Reverse (-)
16839284 .. 16839967
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG190800.1

Sequence Viewer

Length: 537 bp
ATGATCGTCTACGATCATTACCGGAACGGAAGCTTGGACCGATGGCTGTTTGGGCTTGGAACACTCCCATGGACGTGGCGGTTCAATCTCATCAAAGACATAGCAGAAGCTCTAAGTTTCCTCCACTCCAAACAACTCGCTCATGGAAACTTAAACACAAGCACTATCTTCCTCGACGTGAACTACCGGGCCGTTGTTGGAGACTACCGGTTCGGATTCTTTTCGGGTTTGTCGGGTCGAGATGACCCGGTTTCTGGTATGAGAGCGGATGTGTTCGGGTTTGGAATGTTGATTTTGGAAATTGTAACTGGTAAAAAAGAGGAGGAGGTTGGAGATGAAGAGGTGGGTCTTTCAGGGTTTGTAGGGGAAATGCTTGGGAAGGGAGAGATGGTGAAGGTTGTGGATGAGAGATTGGGAGACCGGGTTAACTGGGAGGAAGCGTCTCGGGTTTTGAAAATTGGGCTGAGTTGCACCACTGCGAGTTGTAGCAGGCCCAACATGAATGAGGTGTTGCAGTGCCTCACTAATGCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase_Tyr

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

5.22

Isoelectric Point (pI)

21.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033680)

Species Orthologous Gene IDs
rosa_samantha Rh7AG181300 Rh7CG190800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 9
AciI CCGC 2 cut(s) 79, 266
AfiI CCNNNNNNNGG 1 cut(s) 254
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 85, 454
AjiI CACGTC 2 cut(s) 75, 178
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 2 cut(s) 33, 110
AluI AGCT 2 cut(s) 33, 110
Alw26I GTCTC 3 cut(s) 195, 411, 447
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 2 cut(s) 189, 491
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsiGI ACCGGT 1 cut(s) 207
AspS9I GGNCC 3 cut(s) 37, 189, 492
AsuC2I CCSGG 3 cut(s) 188, 248, 422
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 1 cut(s) 37
BccI CCATC 2 cut(s) 36, 382
BceAI ACGGC 1 cut(s) 176
BcnI CCSGG 3 cut(s) 188, 248, 422
BcoDI GTCTC 3 cut(s) 195, 411, 447
BfaI CTAG 1 cut(s) 535
Bme1390I CCNGG 3 cut(s) 188, 248, 422
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 444
BmgBI CACGTC 2 cut(s) 75, 178
BmgT120I GGNCC 3 cut(s) 37, 189, 492
BmrFI CCNGG 3 cut(s) 188, 248, 422
BmrI ACTGGG 1 cut(s) 439
BmuI ACTGGG 1 cut(s) 439
BpuMI CCSGG 3 cut(s) 188, 248, 422
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 2 cut(s) 21, 207
BsaXI ACNNNNNCTCC 6 cut(s) 375, 405, 408, 425, 438, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 313, 434
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 274, 409
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 313, 434
BseRI GAGGAG 2 cut(s) 335, 338
BshFI GGCC 2 cut(s) 191, 493
BshTI ACCGGT 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 5 cut(s) 22, 187, 208, 248, 421
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 3 cut(s) 195, 411, 447
BsmBI CGTCTC 1 cut(s) 447
BsnI GGCC 2 cut(s) 191, 493
Bso31I GGTCTC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 444
Bsp143I GATC 2 cut(s) 3, 13
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 2 cut(s) 79, 266
BspANI GGCC 2 cut(s) 191, 493
BspCNI CTCAG 1 cut(s) 456
BspTNI GGTCTC 1 cut(s) 411
BsrBI CCGCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 2 cut(s) 313, 434
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 3, 13
BssT1I CCWWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 113, 464
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 274, 409
BstKTI GATC 2 cut(s) 6, 16
BstMAI GTCTC 3 cut(s) 195, 411, 447
BstMBI GATC 2 cut(s) 3, 13
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 186, 246, 420
BstXI CCANNNNNNTGG 1 cut(s) 75
BsuRI GGCC 2 cut(s) 191, 493
BtgI CCRYGG 1 cut(s) 68
BtrI CACGTC 2 cut(s) 75, 178
BtsCI GGATG 2 cut(s) 274, 409
BtsI GCAGTG 2 cut(s) 474, 521
BtsIMutI CAGTG 2 cut(s) 474, 521
Cac8I GCNNGC 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 3 cut(s) 37, 189, 492
CseI GACGC 1 cut(s) 429
CspAI ACCGGT 1 cut(s) 207
CviAII CATG 3 cut(s) 69, 143, 499
CviJI RGCY 7 cut(s) 33, 46, 55, 110, 191, 463, 493
CviKI_1 RGCY 7 cut(s) 33, 46, 55, 110, 191, 463, 493
DdeI CTNAG 2 cut(s) 113, 464
DpnI GATC 2 cut(s) 5, 15
DpnII GATC 2 cut(s) 3, 13
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 3 cut(s) 72, 146, 502
FaiI YATR 5 cut(s) 70, 101, 144, 260, 500
FatI CATG 3 cut(s) 68, 142, 498
FblI GTMKAC 1 cut(s) 9
FokI GGATG 2 cut(s) 281, 416
FspBI CTAG 1 cut(s) 535
HaeIII GGCC 2 cut(s) 191, 493
HapII CCGG 5 cut(s) 22, 187, 208, 248, 421
HgaI GACGC 1 cut(s) 429
Hin1II CATG 3 cut(s) 72, 146, 502
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 1 cut(s) 216
HpaI GTTAAC 1 cut(s) 427
HpaII CCGG 5 cut(s) 22, 187, 208, 248, 421
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 3 cut(s) 10, 181, 427
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 3 cut(s) 10, 181, 427
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 373, 388
HpyCH4IV ACGT 2 cut(s) 74, 177
HpyCH4V TGCA 3 cut(s) 471, 514, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 113, 464
HpySE526I ACGT 2 cut(s) 74, 177
Hsp92II CATG 3 cut(s) 72, 146, 502
KspAI GTTAAC 1 cut(s) 427
Kzo9I GATC 2 cut(s) 3, 13
MaeI CTAG 1 cut(s) 535
MaeII ACGT 2 cut(s) 74, 177
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 5, 15
MbiI CCGCTC 1 cut(s) 266
MboI GATC 2 cut(s) 3, 13
MboII GAAGA 2 cut(s) 160, 350
MluCI AATT 2 cut(s) 300, 456
MmeI TCCRAC 2 cut(s) 178, 310
MnlI CCTC 9 cut(s) 131, 182, 313, 316, 319, 334, 427, 499, 530
MseI TTAA 2 cut(s) 152, 426
MslI CAYNNNNRTG 2 cut(s) 67, 73
MspI CCGG 5 cut(s) 22, 187, 208, 248, 421
MspR9I CCNGG 3 cut(s) 188, 248, 422
MwoI GCNNNNNNNGC 1 cut(s) 52
NciI CCSGG 3 cut(s) 188, 248, 422
NcoI CCATGG 1 cut(s) 68
NdeII GATC 2 cut(s) 3, 13
NlaIII CATG 3 cut(s) 72, 146, 502
PfeI GAWTC 1 cut(s) 216
PinAI ACCGGT 1 cut(s) 207
PspPI GGNCC 3 cut(s) 37, 189, 492
RseI CAYNNNNRTG 2 cut(s) 67, 73
SaqAI TTAA 2 cut(s) 152, 426
Sau3AI GATC 2 cut(s) 3, 13
Sau96I GGNCC 3 cut(s) 37, 189, 492
ScrFI CCNGG 3 cut(s) 188, 248, 422
SetI ASST 8 cut(s) 35, 77, 112, 180, 330, 345, 399, 510
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 67, 73
Sse9I AATT 2 cut(s) 300, 456
SsiI CCGC 2 cut(s) 79, 266
SspMI CTAG 1 cut(s) 535
StyD4I CCNGG 3 cut(s) 186, 246, 420
StyI CCWWGG 1 cut(s) 68
TaiI ACGT 2 cut(s) 77, 180
TaqI TCGA 2 cut(s) 174, 238
TaqII GACCGA 1 cut(s) 54
TasI AATT 2 cut(s) 300, 456
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 2 cut(s) 152, 426
Tru9I TTAA 2 cut(s) 152, 426
TscAI CASTG 2 cut(s) 481, 521
TspDTI ATGAA 2 cut(s) 351, 515
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 481, 521
VpaK11BI GGWCC 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.