Rh7AG181400

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018123
Physical Location & Seq
Reverse (-)
16123065 .. 16124375
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG181400.1

Sequence Viewer

Length: 1311 bp
ATGGATTCCCTACCATGCTTATGGTGGATATGGTTAATCATTTCAATCACCTTTCTTGCAAAACAAGAAACCCAACTTCTAGCACATAACCACCAAAAACGACCTACAACAAATGTAACCAAGCACCTTCACTTCCCAAGTTTTCACCCAAGTAATCCTGAATTGAAATGCCTTGGAAATGCAGTCATCTCAGAAGAGAAGGGTGTGATTCAAATACCTCATGCATCATTAGAAGTTCAACCCCAGACATACCAAGTAGGCAGAGCTCTTTATTCTTCTCATATACGCCTATTTGATCCAATGACTCTAACCCCAGCTTCTTTCCAAACAACCTTCTCTTTCCAATTCACCAACTCTACCACAAATCGCAGTGGAAATGGCCTAGCCTTTGTCATCGTCCCGGATGAATTCACCACTGGAAAACCAGGCCCATGGCTTGGTATTGTCAACGATGCATGCAACCATTACAAGGTCTTTGCAGTTGAATTTGACACTAGCCATGACCTACAGTTTGGTGATCCCAACGACGATCACGTTGGGATCAACCTAGGAACCATTGTGTCCTTCAAAACCGCAAATTCCTCCGAGGCTAGTGTTTCTCTCCATAATCACACGGTAGTCCACCGGGTTTGGATCACCTACGATGGATATCTTAGGTGGATCACCCTCCATCTGGGGATAGACGGCGACCCTAAGCCCTCACAACCTCTACTATCTTCATCTTTAAATCTTTCTCCATTTCTTGAAGAATACATGTTTGTTGGGTTCTCTGCTTCCACCGGAGACTCATCCCAGATCCACAATATATTCTCATGGAACTTTTCGTCGACAGTTCCAGCTTCTCTTCCAATCCCATCACCCAAAATTTGTCACAGAAATGTAAAACACCAGGTCTCCAAGTACTCAAAAACAGGCCAAAGGGCGCCACCAAGCGGTTTCTTGATCTTTGTGACTTTATTGGGATTGTGTAGTTTGGCTTTTCTTGGTTTCTACTTCAGCAGTCAGAGAAACAAGAGCAGCTCGGAGGAGGCGTTTTCGAGATTCCTTGAAAGGAGGAAAAGGCCAATGCTTCCAAGCAAACCTCGCAAGTTTACATTTACAGAGCTTTACAGTGCAACGCAACGTTTCAGCAGAGTCCATGTATTGGCAAGTGATGCTAGTGGTGTTTTGTATAGAGGGACGCTCACTAATGGGTATCATGTTGCCGTGAGGCGGTTCTCAACTCGGTTTTTGGGTTCGTCGAGCTCGCGCTTTGATTGGGTCCGAGTTAAGAAAAGAATCGGTGAAATAACAAAGGTAATTAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase_Tyr

Protein Analysis

436

Amino Acids

49.1

Weight (kDa)

9.54

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 43 - 280 5.9e-57 Legume lectin domain
Lectin_L-type_dom PF18483 59 - 267 1.9e-09 Legume lectin beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018123)

Species Orthologous Gene IDs
prunus_persica Prupe.5G088200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0199741
rosa_laevigata RLG00000003774
rosa_multiflora Rmu_sc0002748.1_g000023
rosa_roxburghii Rroxscaffold_3G00256470
rosa_rugosa Rorug07G0056000
rosa_samantha Rh7AG181400 Rh7BG184200 Rh7CG190900 Rh7DG184200
rosa_wichuraiana Rw7G015900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 922
AccB7I CCANNNNNTGG 2 cut(s) 437, 1144
AccI GTMKAC 1 cut(s) 827
AccII CGCG 1 cut(s) 1249
AciI CCGC 3 cut(s) 573, 933, 1213
AclI AACGTT 1 cut(s) 1123
AclWI GGATC 6 cut(s) 290, 512, 548, 641, 668, 790
AcsI RAATTY 4 cut(s) 407, 485, 577, 864
AcuI CTGAAG 1 cut(s) 979
AcyI GRCGYC 1 cut(s) 923
AfaI GTAC 1 cut(s) 902
AfiI CCNNNNNNNGG 6 cut(s) 437, 469, 673, 932, 1144, 1212
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 8 cut(s) 45, 166, 212, 239, 485, 568, 746, 1049
AjnI CCWGG 2 cut(s) 424, 888
AluBI AGCT 6 cut(s) 266, 317, 839, 1020, 1105, 1245
AluI AGCT 6 cut(s) 266, 317, 839, 1020, 1105, 1245
Alw21I GWGCWC 2 cut(s) 268, 1247
Alw26I GTCTC 2 cut(s) 777, 898
AlwI GGATC 6 cut(s) 290, 512, 548, 641, 668, 790
AoxI GGCC 4 cut(s) 379, 427, 913, 1061
ApeKI GCWGC 1 cut(s) 1017
ApoI RAATTY 4 cut(s) 407, 485, 577, 864
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AseI ATTAAT 1 cut(s) 1302
AspA2I CCTAGG 1 cut(s) 547
AspLEI GCGC 2 cut(s) 925, 1251
AspS9I GGNCC 2 cut(s) 428, 1261
AsuC2I CCSGG 2 cut(s) 401, 626
AsuHPI GGTGA 9 cut(s) 40, 137, 340, 403, 527, 628, 655, 849, 1295
AvaII GGWCC 1 cut(s) 1261
AvrII CCTAGG 1 cut(s) 547
BanI GGYRCC 1 cut(s) 922
BanII GRGCYC 2 cut(s) 268, 1247
Bbv12I GWGCWC 2 cut(s) 268, 1247
BbvI GCAGC 1 cut(s) 1029
BccI CCATC 3 cut(s) 638, 678, 862
BceAI ACGGC 2 cut(s) 700, 1190
BciT130I CCWGG 2 cut(s) 426, 890
BcnI CCSGG 2 cut(s) 401, 626
BcoDI GTCTC 2 cut(s) 777, 898
BfaI CTAG 6 cut(s) 80, 383, 495, 548, 591, 1158
BfmI CTRYAG 1 cut(s) 506
BfoI RGCGCY 1 cut(s) 926
BisI GCNGC 1 cut(s) 1018
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 1 cut(s) 1019
BmcAI AGTACT 1 cut(s) 902
Bme1390I CCNGG 4 cut(s) 401, 426, 626, 890
Bme18I GGWCC 1 cut(s) 1261
BmgT120I GGNCC 2 cut(s) 428, 1261
BmiI GGNNCC 3 cut(s) 553, 924, 1262
BmrFI CCNGG 4 cut(s) 401, 426, 626, 890
BmsI GCATC 3 cut(s) 233, 442, 1144
BplI GAGNNNNNCTC 2 cut(s) 1167, 1199
Bpu10I CCTNAGC 1 cut(s) 693
BpuMI CCSGG 2 cut(s) 401, 626
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 923
BsaI GGTCTC 1 cut(s) 898
BsaJI CCNNGG 4 cut(s) 172, 431, 547, 585
BsaWI WCCGGW 1 cut(s) 779
BsaXI ACNNNNNCTCC 4 cut(s) 878, 908, 1016, 1046
Bsc4I CCNNNNNNNGG 6 cut(s) 437, 469, 673, 932, 1144, 1212
Bse1I ACTGG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 2 cut(s) 426, 890
BseDI CCNNGG 4 cut(s) 172, 431, 547, 585
BseGI GGATG 2 cut(s) 409, 788
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 6 cut(s) 437, 469, 673, 932, 1144, 1212
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 1 cut(s) 1040
BseXI GCAGC 1 cut(s) 1029
BseYI CCCAGC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 1249
BshFI GGCC 4 cut(s) 381, 429, 915, 1063
BshNI GGYRCC 1 cut(s) 922
BsiHKAI GWGCWC 2 cut(s) 268, 1247
BsiSI CCGG 3 cut(s) 401, 625, 780
BslFI GGGAC 2 cut(s) 383, 1192
BslI CCNNNNNNNGG 6 cut(s) 437, 469, 673, 932, 1144, 1212
BsmAI GTCTC 2 cut(s) 777, 898
BsmFI GGGAC 2 cut(s) 383, 1192
BsnI GGCC 4 cut(s) 381, 429, 915, 1063
Bso31I GGTCTC 1 cut(s) 898
Bsp1286I GDGCHC 2 cut(s) 268, 1247
Bsp143I GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 3 cut(s) 573, 933, 1213
BspANI GGCC 4 cut(s) 381, 429, 915, 1063
BspCNI CTCAG 1 cut(s) 203
BspFNI CGCG 1 cut(s) 1249
BspLI GGNNCC 3 cut(s) 553, 924, 1262
BspPI GGATC 6 cut(s) 290, 512, 548, 641, 668, 790
BspT107I GGYRCC 1 cut(s) 922
BspTNI GGTCTC 1 cut(s) 898
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 4 cut(s) 172, 431, 547, 585
BssMI GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
BssNI GRCGYC 1 cut(s) 923
BssT1I CCWWGG 3 cut(s) 172, 431, 547
Bst2UI CCWGG 2 cut(s) 426, 890
Bst4CI ACNGT 4 cut(s) 510, 616, 832, 1112
Bst6I CTCTTC 2 cut(s) 189, 849
BstACI GRCGYC 1 cut(s) 923
BstAPI GCANNNNNTGC 1 cut(s) 1154
BstC8I GCNNGC 2 cut(s) 457, 1247
BstDEI CTNAG 3 cut(s) 190, 653, 693
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 2 cut(s) 409, 788
BstFNI CGCG 1 cut(s) 1249
BstH2I RGCGCY 1 cut(s) 926
BstHHI GCGC 2 cut(s) 925, 1251
BstKTI GATC 8 cut(s) 298, 520, 532, 543, 636, 663, 798, 945
BstMAI GTCTC 2 cut(s) 777, 898
BstMBI GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
BstMWI GCNNNNNNNGC 2 cut(s) 1083, 1154
BstNI CCWGG 2 cut(s) 426, 890
BstNSI RCATGY 2 cut(s) 459, 757
BstSCI CCNGG 4 cut(s) 399, 424, 624, 888
BstSFI CTRYAG 1 cut(s) 506
BstUI CGCG 1 cut(s) 1249
BstV1I GCAGC 1 cut(s) 1029
BstX2I RGATCY 1 cut(s) 795
BstXI CCANNNNNNTGG 2 cut(s) 21, 432
BstYI RGATCY 1 cut(s) 795
BsuRI GGCC 4 cut(s) 381, 429, 915, 1063
BtgI CCRYGG 1 cut(s) 431
BtsCI GGATG 2 cut(s) 409, 788
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 3 cut(s) 376, 414, 1117
Cac8I GCNNGC 2 cut(s) 457, 1247
CfoI GCGC 2 cut(s) 925, 1251
Cfr13I GGNCC 2 cut(s) 428, 1261
CseI GACGC 1 cut(s) 1189
CsiI ACCWGGT 1 cut(s) 888
Csp6I GTAC 1 cut(s) 901
CspCI CAANNNNNGTGG 2 cut(s) 611, 646
CviAII CATG 9 cut(s) 15, 221, 432, 456, 500, 754, 813, 1139, 1199
CviQI GTAC 1 cut(s) 901
DdeI CTNAG 3 cut(s) 190, 653, 693
DinI GGCGCC 1 cut(s) 924
DpnI GATC 8 cut(s) 297, 519, 531, 542, 635, 662, 797, 944
DpnII GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
DraI TTTAAA 1 cut(s) 726
Eam1104I CTCTTC 2 cut(s) 189, 849
EarI CTCTTC 2 cut(s) 189, 849
Ecl136II GAGCTC 2 cut(s) 266, 1245
Eco130I CCWWGG 3 cut(s) 172, 431, 547
Eco24I GRGCYC 2 cut(s) 268, 1247
Eco31I GGTCTC 1 cut(s) 898
Eco32I GATATC 1 cut(s) 650
Eco47I GGWCC 1 cut(s) 1261
Eco53kI GAGCTC 2 cut(s) 266, 1245
Eco57I CTGAAG 1 cut(s) 979
EcoICRI GAGCTC 2 cut(s) 266, 1245
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 424, 888
EcoRV GATATC 1 cut(s) 650
EcoT14I CCWWGG 3 cut(s) 172, 431, 547
EcoT22I ATGCAT 2 cut(s) 226, 457
EcoT38I GRGCYC 2 cut(s) 268, 1247
EgeI GGCGCC 1 cut(s) 924
EheI GGCGCC 1 cut(s) 924
ErhI CCWWGG 3 cut(s) 172, 431, 547
FaeI CATG 9 cut(s) 18, 224, 435, 459, 503, 757, 816, 1142, 1202
FaqI GGGAC 2 cut(s) 383, 1192
FatI CATG 9 cut(s) 14, 220, 431, 455, 499, 753, 812, 1138, 1198
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 1 cut(s) 1018
FokI GGATG 2 cut(s) 416, 775
FriOI GRGCYC 2 cut(s) 268, 1247
Fsp4HI GCNGC 1 cut(s) 1018
FspBI CTAG 6 cut(s) 80, 383, 495, 548, 591, 1158
GlaI GCGC 2 cut(s) 924, 1250
GluI GCNGC 1 cut(s) 1018
GsaI CCCAGC 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 926
HaeIII GGCC 4 cut(s) 381, 429, 915, 1063
HapII CCGG 3 cut(s) 401, 625, 780
HgaI GACGC 1 cut(s) 1189
HhaI GCGC 2 cut(s) 925, 1251
Hin1I GRCGYC 1 cut(s) 923
Hin1II CATG 9 cut(s) 18, 224, 435, 459, 503, 757, 816, 1142, 1202
Hin6I GCGC 2 cut(s) 923, 1249
HinP1I GCGC 2 cut(s) 923, 1249
HincII GTYRAC 2 cut(s) 448, 828
HindII GTYRAC 2 cut(s) 448, 828
HinfI GANTC 7 cut(s) 5, 208, 304, 785, 1041, 1134, 1278
HpaII CCGG 3 cut(s) 401, 625, 780
HphI GGTGA 9 cut(s) 40, 137, 340, 403, 527, 628, 655, 849, 1295
Hpy166II GTNNAC 4 cut(s) 448, 622, 828, 1092
Hpy188I TCNGA 5 cut(s) 193, 586, 1005, 1024, 1265
Hpy188III TCNNGA 4 cut(s) 158, 743, 940, 1038
Hpy8I GTNNAC 4 cut(s) 448, 622, 828, 1092
Hpy99I CGWCG 3 cut(s) 530, 829, 1243
HpyAV CCTTC 4 cut(s) 137, 193, 343, 574
HpyCH4III ACNGT 4 cut(s) 510, 616, 832, 1112
HpyCH4IV ACGT 2 cut(s) 534, 1123
HpyCH4V TGCA 7 cut(s) 59, 182, 224, 455, 459, 479, 1115
HpyF10VI GCNNNNNNNGC 2 cut(s) 1083, 1154
HpyF3I CTNAG 3 cut(s) 190, 653, 693
HpySE526I ACGT 2 cut(s) 534, 1123
Hsp92I GRCGYC 1 cut(s) 923
Hsp92II CATG 9 cut(s) 18, 224, 435, 459, 503, 757, 816, 1142, 1202
HspAI GCGC 2 cut(s) 923, 1249
KasI GGCGCC 1 cut(s) 922
Kzo9I GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
Lsp1109I GCAGC 1 cut(s) 1029
LweI GCATC 3 cut(s) 233, 442, 1144
MabI ACCWGGT 1 cut(s) 888
MaeI CTAG 6 cut(s) 80, 383, 495, 548, 591, 1158
MaeII ACGT 2 cut(s) 534, 1123
MaeIII GTNAC 3 cut(s) 115, 869, 949
MalI GATC 8 cut(s) 297, 519, 531, 542, 635, 662, 797, 944
MboI GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
MboII GAAGA 5 cut(s) 206, 267, 708, 758, 836
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 2 cut(s) 268, 1247
MluCI AATT 8 cut(s) 161, 344, 407, 485, 577, 864, 1299, 1303
Mly113I GGCGCC 1 cut(s) 923
MlyI GAGTC 3 cut(s) 298, 779, 1143
Mph1103I ATGCAT 2 cut(s) 226, 457
MseI TTAA 5 cut(s) 35, 725, 1269, 1302, 1309
MslI CAYNNNNRTG 2 cut(s) 19, 876
MspI CCGG 3 cut(s) 401, 625, 780
MspR9I CCNGG 4 cut(s) 401, 426, 626, 890
MvaI CCWGG 2 cut(s) 426, 890
MvnI CGCG 1 cut(s) 1249
MwoI GCNNNNNNNGC 2 cut(s) 1083, 1154
NarI GGCGCC 1 cut(s) 923
NciI CCSGG 2 cut(s) 401, 626
NcoI CCATGG 1 cut(s) 431
NdeII GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
NlaIII CATG 9 cut(s) 18, 224, 435, 459, 503, 757, 816, 1142, 1202
NlaIV GGNNCC 3 cut(s) 553, 924, 1262
NmuCI GTSAC 2 cut(s) 869, 949
NsiI ATGCAT 2 cut(s) 226, 457
NspI RCATGY 2 cut(s) 459, 757
PaeI GCATGC 1 cut(s) 459
PciI ACATGT 1 cut(s) 753
PcsI WCGNNNNNNNCGW 2 cut(s) 531, 1028
PfeI GAWTC 4 cut(s) 5, 208, 1041, 1278
PflMI CCANNNNNTGG 2 cut(s) 437, 1144
PfoI TCCNGGA 1 cut(s) 399
PkrI GCNGC 1 cut(s) 1019
PleI GAGTC 3 cut(s) 298, 779, 1142
PluTI GGCGCC 1 cut(s) 926
PpsI GAGTC 3 cut(s) 298, 779, 1142
PscI ACATGT 1 cut(s) 753
PshBI ATTAAT 1 cut(s) 1302
Psp124BI GAGCTC 2 cut(s) 268, 1247
Psp1406I AACGTT 1 cut(s) 1123
Psp6I CCWGG 2 cut(s) 424, 888
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 2 cut(s) 424, 888
PspN4I GGNNCC 3 cut(s) 553, 924, 1262
PspPI GGNCC 2 cut(s) 428, 1261
PsuI RGATCY 1 cut(s) 795
RsaI GTAC 1 cut(s) 902
RsaNI GTAC 1 cut(s) 901
RseI CAYNNNNRTG 2 cut(s) 19, 876
SacI GAGCTC 2 cut(s) 268, 1247
SalI GTCGAC 1 cut(s) 826
SaqAI TTAA 5 cut(s) 35, 725, 1269, 1302, 1309
SatI GCNGC 1 cut(s) 1018
Sau3AI GATC 8 cut(s) 295, 517, 529, 540, 633, 660, 795, 942
Sau96I GGNCC 2 cut(s) 428, 1261
ScaI AGTACT 1 cut(s) 902
SchI GAGTC 3 cut(s) 298, 779, 1143
ScrFI CCNGG 4 cut(s) 401, 426, 626, 890
SduI GDGCHC 2 cut(s) 268, 1247
SexAI ACCWGGT 1 cut(s) 888
SfaNI GCATC 3 cut(s) 233, 442, 1144
SfcI CTRYAG 1 cut(s) 506
SfoI GGCGCC 1 cut(s) 924
SinI GGWCC 1 cut(s) 1261
SmiMI CAYNNNNRTG 2 cut(s) 19, 876
SphI GCATGC 1 cut(s) 459
Sse9I AATT 8 cut(s) 161, 344, 407, 485, 577, 864, 1299, 1303
SsiI CCGC 3 cut(s) 573, 933, 1213
SspDI GGCGCC 1 cut(s) 922
SspMI CTAG 6 cut(s) 80, 383, 495, 548, 591, 1158
SstI GAGCTC 2 cut(s) 268, 1247
StyD4I CCNGG 4 cut(s) 399, 424, 624, 888
StyI CCWWGG 3 cut(s) 172, 431, 547
TaaI ACNGT 4 cut(s) 510, 616, 832, 1112
TaiI ACGT 2 cut(s) 537, 1126
TaqI TCGA 3 cut(s) 827, 1037, 1241
TasI AATT 8 cut(s) 161, 344, 407, 485, 577, 864, 1299, 1303
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 4 cut(s) 5, 208, 1041, 1278
Tru1I TTAA 5 cut(s) 35, 725, 1269, 1302, 1309
Tru9I TTAA 5 cut(s) 35, 725, 1269, 1302, 1309
TscAI CASTG 3 cut(s) 376, 421, 1117
TseFI GTSAC 2 cut(s) 869, 949
TseI GCWGC 1 cut(s) 1017
Tsp45I GTSAC 2 cut(s) 869, 949
TspDTI ATGAA 2 cut(s) 420, 708
TspRI CASTG 3 cut(s) 376, 421, 1117
Van91I CCANNNNNTGG 2 cut(s) 437, 1144
VpaK11BI GGWCC 1 cut(s) 1261
VspI ATTAAT 1 cut(s) 1302
XapI RAATTY 4 cut(s) 407, 485, 577, 864
XceI RCATGY 2 cut(s) 459, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XmaJI CCTAGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 827
XspI CTAG 6 cut(s) 80, 383, 495, 548, 591, 1158
ZrmI AGTACT 1 cut(s) 902
Zsp2I ATGCAT 2 cut(s) 226, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.