Rh7AG196100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0034587
Physical Location & Seq
Forward (+)
17640201 .. 17658398
18198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG196100.1

Sequence Viewer

Length: 330 bp
ATGGTGAGTGTAATCTTGCATTGTAATAAAAGAATTCCATCAGGGAGAAACCGTAGATCTGCAATAGCGCCGGATCCGACTGTTGGTGTTGATGAAGGAACAACTATTGGGCTTGACCAAGGAACATGGAAATCGATGGAATACTCTGTCCTTTTGGTCCGACTGATAAGAAGTAGCCAGTCTGGTTCAGCTCAGCTGGACCGCCTGGACATGATGGCATCCCAAATTTTCCGGGCAATTGAGCCATTTGAGCGCCTCCCTTTTTCTAAGCTTGAAGCTTTTGCAGCAATCAAGCCCGCTGAAAAGATAGAGGAGAGAGAAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.23

Weight (kDa)

8.97

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034587)

Species Orthologous Gene IDs
rosa_samantha Rh7AG196100 Rh7BG197400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 202, 297
AclWI GGATC 2 cut(s) 68, 81
AcsI RAATTY 2 cut(s) 33, 225
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 4 cut(s) 191, 196, 271, 278
AluI AGCT 4 cut(s) 191, 196, 271, 278
AlwI GGATC 2 cut(s) 68, 81
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 33, 225
AspLEI GCGC 2 cut(s) 70, 255
AspS9I GGNCC 2 cut(s) 157, 199
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 157, 199
BamHI GGATCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 296
BccI CCATC 3 cut(s) 46, 130, 208
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 1 cut(s) 233
BfoI RGCGCY 2 cut(s) 71, 256
BglII AGATCT 1 cut(s) 56
BisI GCNGC 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 206, 233
Bme18I GGWCC 2 cut(s) 157, 199
BmgT120I GGNCC 2 cut(s) 157, 199
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 2 cut(s) 206, 233
BmsI GCATC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 134
BsiSI CCGG 2 cut(s) 71, 232
BslI CCNNNNNNNGG 1 cut(s) 83
Bsp143I GATC 2 cut(s) 56, 73
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 2 cut(s) 202, 297
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 68, 81
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 56, 73
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 53, 82
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 2 cut(s) 192, 267
BstF5I GGATG 1 cut(s) 218
BstH2I RGCGCY 2 cut(s) 71, 256
BstHHI GCGC 2 cut(s) 70, 255
BstKTI GATC 2 cut(s) 59, 76
BstMBI GATC 2 cut(s) 56, 73
BstMWI GCNNNNNNNGC 2 cut(s) 250, 284
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 204, 231
BstV1I GCAGC 1 cut(s) 296
BstX2I RGATCY 2 cut(s) 56, 73
BstYI RGATCY 2 cut(s) 56, 73
Bsu15I ATCGAT 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 134
BtsCI GGATG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 297
CfoI GCGC 2 cut(s) 70, 255
Cfr13I GGNCC 2 cut(s) 157, 199
ClaI ATCGAT 1 cut(s) 134
CviAII CATG 2 cut(s) 126, 211
CviJI RGCY 8 cut(s) 112, 177, 191, 196, 244, 271, 278, 295
CviKI_1 RGCY 8 cut(s) 112, 177, 191, 196, 244, 271, 278, 295
DdeI CTNAG 2 cut(s) 192, 267
DpnI GATC 2 cut(s) 58, 75
DpnII GATC 2 cut(s) 56, 73
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 157, 199
EcoRI GAATTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 129, 214
FaiI YATR 2 cut(s) 127, 212
FatI CATG 2 cut(s) 125, 210
FauI CCCGC 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 285
GlaI GCGC 2 cut(s) 69, 254
GluI GCNGC 1 cut(s) 285
HaeII RGCGCY 2 cut(s) 71, 256
HapII CCGG 2 cut(s) 71, 232
HhaI GCGC 2 cut(s) 70, 255
Hin1II CATG 2 cut(s) 129, 214
Hin6I GCGC 2 cut(s) 68, 253
HinP1I GCGC 2 cut(s) 68, 253
HindIII AAGCTT 2 cut(s) 269, 276
HpaII CCGG 2 cut(s) 71, 232
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 78, 161
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 53, 82
HpyCH4V TGCA 3 cut(s) 19, 62, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 284
HpyF3I CTNAG 2 cut(s) 192, 267
Hsp92II CATG 2 cut(s) 129, 214
HspAI GCGC 2 cut(s) 68, 253
Kzo9I GATC 2 cut(s) 56, 73
LpnPI CCDG 8 cut(s) 27, 84, 168, 182, 191, 191, 218, 245
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 227
MalI GATC 2 cut(s) 58, 75
MboI GATC 2 cut(s) 56, 73
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 56, 73
MluCI AATT 3 cut(s) 33, 225, 237
MmeI TCCRAC 2 cut(s) 101, 184
MnlI CCTC 2 cut(s) 266, 304
MspA1I CMGCKG 2 cut(s) 196, 299
MspI CCGG 2 cut(s) 71, 232
MspR9I CCNGG 2 cut(s) 206, 233
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 250, 284
NciI CCSGG 1 cut(s) 233
NdeII GATC 2 cut(s) 56, 73
NlaIII CATG 2 cut(s) 129, 214
NlaIV GGNNCC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 157, 199
PsuI RGATCY 2 cut(s) 56, 73
PvuII CAGCTG 1 cut(s) 196
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 56, 73
Sau96I GGNCC 2 cut(s) 157, 199
ScrFI CCNGG 2 cut(s) 206, 233
SetI ASST 4 cut(s) 193, 198, 273, 280
SfaNI GCATC 1 cut(s) 227
SinI GGWCC 2 cut(s) 157, 199
Sse9I AATT 3 cut(s) 33, 225, 237
SsiI CCGC 2 cut(s) 202, 297
StyD4I CCNGG 2 cut(s) 204, 231
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 53, 82
TaqI TCGA 1 cut(s) 134
TasI AATT 3 cut(s) 33, 225, 237
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 157, 199
XapI RAATTY 2 cut(s) 33, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.