Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0034587

Physical Location & Seq

Genomic Coordinates Forward (+)

16190349 .. 16205296

Gene Structure 14948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGAGTGTAATCTTGCATTGCAATAGAAGAATTCCATCAGGGAGAAACCGTAGATCTGCAACAGCGCCGGATCCGACTGTTGGTGTTGAAGAAGAAACAACTATTGGGCTTGACCAAGGAACATGGAAATCGATGGAATACTCTGTCCTGTCGGATGGGTTTATAGTGGATTTCGGTGGCCTACATCTGCTGGATGAGTCTTGCTGCGGAGTGACTTACTTGAAGATGGCAAGTGTGGTTCTGTTCGGGCTGGGCTGGAAGGAGTTGTTCAATTGGACAGAATTGTGCAAAATAGGGACTGAAGATCAGAATGAATGGTACTTTTTCAGCCACAAAGATAAAAAGTACCCTACAGGAACTCGCACAAATAGGGCAACAAAAGCTGGGTTTTGGAAAGCAACTGGAAGAGATAAAGCTATTTACATTAGGCACAACCTTGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGACGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCACGAGTATCGACTTGAAACTAATGAAAATGGCCCTCCTCAGGCAAGTATTTTTATCTCTCTCCTCACTCTACAACAATTTCTTCACGCTCTAGCTTTTGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

206

Amino Acids

23.47

Weight (kDa)

8.63

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	97 - 176	2.2e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0034587)

Species	Orthologous Gene IDs
rosa_samantha	Rh7AG196100 Rh7BG197400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	3 cut(s)	68, 81, 515
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	323, 350
AfiI	CCNNNNNNNGG	2 cut(s)	83, 553
AgsI	TTSAA	4 cut(s)	92, 226, 274, 530
AjiI	CACGTC	1 cut(s)	479
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	4 cut(s)	386, 419, 608, 616
AluI	AGCT	4 cut(s)	386, 419, 608, 616
Alw21I	GWGCWC	1 cut(s)	484
AlwI	GGATC	3 cut(s)	68, 81, 515
AoxI	GGCC	2 cut(s)	181, 544
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	4 cut(s)	46, 130, 152, 223
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	71
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	496
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
Bsa29I	ATCGAT	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 553
Bse1I	ACTGG	1 cut(s)	409
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	19
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	163, 202
BseLI	CCNNNNNNNGG	2 cut(s)	83, 553
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	2 cut(s)	540, 566
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	2 cut(s)	253, 386
BshFI	GGCC	2 cut(s)	183, 546
BshVI	ATCGAT	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	83, 553
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	183, 546
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	56, 73, 307, 507
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	183, 546
BspCNI	CTCAG	1 cut(s)	565
BspDI	ATCGAT	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	3 cut(s)	68, 81, 515
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	4 cut(s)	56, 73, 307, 507
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	53, 82
Bst6I	CTCTTC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	163, 202
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	4 cut(s)	59, 76, 310, 510
BstMBI	GATC	4 cut(s)	56, 73, 307, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstPAI	GACNNNNGTC	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	56, 73
BstYI	RGATCY	2 cut(s)	56, 73
Bsu15I	ATCGAT	1 cut(s)	134
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	183, 546
BsuTUI	ATCGAT	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	163, 202
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	322, 349
CviAII	CATG	3 cut(s)	126, 448, 511
CviQI	GTAC	2 cut(s)	322, 349
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	4 cut(s)	58, 75, 309, 509
DpnII	GATC	4 cut(s)	56, 73, 307, 507
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	3 cut(s)	129, 451, 514
FaiI	YATR	4 cut(s)	127, 167, 449, 512
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	125, 447, 510
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	2 cut(s)	170, 209
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	605
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	208
GsaI	CCCAGC	2 cut(s)	257, 390
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	183, 546
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	129, 451, 514
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	200, 457
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	78, 157, 312, 502
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	53, 82
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	5 cut(s)	19, 24, 62, 291, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	3 cut(s)	129, 451, 514
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	4 cut(s)	56, 73, 307, 507
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	58, 75, 309, 509
MboI	GATC	4 cut(s)	56, 73, 307, 507
MboII	GAAGA	7 cut(s)	42, 104, 107, 238, 317, 420, 587
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	2 cut(s)	56, 73
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	4 cut(s)	33, 274, 284, 590
MlyI	GAGTC	2 cut(s)	209, 451
MmeI	TCCRAC	2 cut(s)	101, 135
MnlI	CCTC	3 cut(s)	558, 561, 587
MspI	CCGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	4 cut(s)	56, 73, 307, 507
NlaIII	CATG	3 cut(s)	129, 451, 514
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	209
PleI	GAGTC	2 cut(s)	208, 451
PpsI	GAGTC	2 cut(s)	208, 451
PshAI	GACNNNNGTC	1 cut(s)	496
PspFI	CCCAGC	2 cut(s)	253, 386
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	56, 73
RsaI	GTAC	2 cut(s)	323, 350
RsaNI	GTAC	2 cut(s)	322, 349
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	4 cut(s)	56, 73, 307, 507
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	2 cut(s)	209, 451
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	6 cut(s)	388, 421, 441, 481, 610, 618
SfcI	CTRYAG	1 cut(s)	354
Sse9I	AATT	4 cut(s)	33, 274, 284, 590
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	605
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	53, 82
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	2 cut(s)	134, 523
TasI	AATT	4 cut(s)	33, 274, 284, 590
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	330, 552
XapI	RAATTY	1 cut(s)	33
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.