Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0021126

Physical Location & Seq

Genomic Coordinates Reverse (-)

5879558 .. 5879767

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG081500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCTGAGTCTGGGGTAGATTTGACGACGAGGAGAAGCTCAATTCCGAACGGGACTTCGGATATGGCATTGTGCTCCCGCGACACGTGGTTCATCGGCTGCCGGTTCCGTCTCCGATCGGCGTTCGACTCGTATTCCGTTGCCTGTGAGGCGTTTTCTGAACGCCGTCTTCGTCAGATTCCGGCCGCCGTTAGAATCAAGCTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

69

Amino Acids

7.79

Weight (kDa)

9.6

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Orthologous Genes (Group: OG0021126)

Species	Orthologous Gene IDs
malus_domestica	MD13G1200000.v1.1
rosa_samantha	Rh7AG065600 Rh7BG081500 Rh7CG082200 Rh7DG083200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	2 cut(s)	79, 186
AcoI	YGGCCR	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	84
AluBI	AGCT	2 cut(s)	39, 202
AluI	AGCT	2 cut(s)	39, 202
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	99, 202
BbrPI	CACGTG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	86, 189
BceAI	ACGGC	2 cut(s)	150, 173
BcoDI	GTCTC	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	3 cut(s)	100, 186, 203
BlsI	GCNGC	3 cut(s)	101, 187, 204
BmiI	GGNNCC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	46
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	86, 189
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	2 cut(s)	119, 186
BshFI	GGCC	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	119, 186
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	103, 182
BslFI	GGGAC	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	116
BspACI	CCGC	2 cut(s)	79, 186
BspANI	GGCC	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssMI	GATC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	116
BstMCI	CGRYCG	2 cut(s)	119, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	86, 189
BstV2I	GAAGAC	1 cut(s)	161
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	102
CviJI	RGCY	5 cut(s)	5, 39, 99, 185, 202
CviKI_1	RGCY	5 cut(s)	5, 39, 99, 185, 202
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
EclXI	CGGCCG	1 cut(s)	183
Eco52I	CGGCCG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	116
FaiI	YATR	1 cut(s)	65
FaqI	GGGAC	1 cut(s)	67
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	100, 186, 203
Fsp4HI	GCNGC	3 cut(s)	100, 186, 203
GluI	GCNGC	3 cut(s)	100, 186, 203
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	103, 182
HinfI	GANTC	4 cut(s)	8, 128, 178, 195
HpaII	CCGG	2 cut(s)	103, 182
Hpy188I	TCNGA	6 cut(s)	48, 61, 116, 160, 177, 209
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	3 cut(s)	116, 157, 195
Lsp1109I	GCAGC	2 cut(s)	86, 189
MaeII	ACGT	1 cut(s)	86
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	17, 122
MnlI	CCTC	2 cut(s)	24, 142
MspI	CCGG	2 cut(s)	103, 182
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	178, 195
PkrI	GCNGC	3 cut(s)	101, 187, 204
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	2 cut(s)	16, 122
PmaCI	CACGTG	1 cut(s)	87
PmlI	CACGTG	1 cut(s)	87
PpsI	GAGTC	2 cut(s)	16, 122
Ppu21I	YACGTR	1 cut(s)	87
PspCI	CACGTG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	119
SatI	GCNGC	3 cut(s)	100, 186, 203
Sau3AI	GATC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	17, 122
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	3 cut(s)	41, 89, 204
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	79, 186
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	42
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	178, 195
TseI	GCWGC	2 cut(s)	99, 202
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	2 cut(s)	98, 127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.