Rh7BG397000

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0030466
Physical Location & Seq
Reverse (-)
43925909 .. 43935916
10008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG397000.1

Sequence Viewer

Length: 639 bp
ATGGCTGAGGCACTCGTCAACCTCCTTGTTGAACAATTGGGTTCAGTTGTTTACCACCACACAAGTGAAGGGGTGAAACTGGTTTTGAAAGCGAAGAAGGACGTTGACAAGTTCAGACGCACCCTCAAACGTATCCAGAAGGACTGTCCCTTGAATGAGAATATGAGACCTCCATATCAAGAGGATAAAAGTATCACATCAATTGAGCATCATCAAGGGTCTTGCTTTTTAAGGCAATTACAGAAGCCAAGAGCATACTCCAGGGTTGAAGATCTAACTGAAAATAGTGTATATTCTAAAGTTTCCAGTTGCTGGAGTTCTCAAGACATGATGACACTGACCACAATCTTCCCCTGTTATTGGCAGAAATCTTTAATCATAAGGACTCAGAATGTTGTTGGTTGTCAAGCTAATGAGGTGCTATGGTCAGACCTCAAAGTAGCAGTGGAGCAGCATAACATGACACTCAGCATGGAAGAGAGGGGAAGAGTGGATGTGATCCTAACTGAGCAGATTCAAATTCAACCAGAGGACAAATGTAGGGGATGTTCAATGAGGGTTGCGGCTCAAATTCAGGAGAGGATCACAACTGAGAGGAAGAGCAGCATGACACGGGCTTCGTCAGCAAAGGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

212

Amino Acids

24.41

Weight (kDa)

8.65

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030466)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0231751
rosa_samantha Rh7BG397000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 312
AciI CCGC 1 cut(s) 563
AclWI GGATC 2 cut(s) 493, 590
AcsI RAATTY 2 cut(s) 519, 570
AfiI CCNNNNNNNGG 2 cut(s) 312, 360
AgsI TTSAA 7 cut(s) 32, 88, 154, 269, 518, 524, 552
AjnI CCWGG 1 cut(s) 260
AleI CACNNNNGTG 1 cut(s) 63
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 2 cut(s) 493, 590
AlwNI CAGNNNCTG 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 451, 603
ApoI RAATTY 2 cut(s) 519, 570
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AsuHPI GGTGA 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 463, 615
BciT130I CCWGG 1 cut(s) 262
BciVI GTATCC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 143
BglII AGATCT 1 cut(s) 271
BisI GCNGC 3 cut(s) 452, 564, 604
BlsI GCNGC 3 cut(s) 453, 565, 605
Bme1390I CCNGG 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 2 cut(s) 244, 334
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 360
Bse1I ACTGG 2 cut(s) 84, 306
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 499, 551
BseLI CCNNNNNNNGG 2 cut(s) 312, 360
BseMII CTCAG 4 cut(s) 401, 481, 498, 582
BseNI ACTGG 2 cut(s) 84, 306
BseXI GCAGC 2 cut(s) 463, 615
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 312, 360
BsmAI GTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 271, 498, 582
BspACI CCGC 1 cut(s) 563
BspCNI CTCAG 4 cut(s) 400, 480, 499, 583
BspPI GGATC 2 cut(s) 493, 590
BspQI GCTCTTC 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 160
BsrI ACTGG 2 cut(s) 84, 306
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 271, 498, 582
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 146, 636
Bst6I CTCTTC 3 cut(s) 471, 481, 593
BstDEI CTNAG 5 cut(s) 6, 387, 467, 507, 591
BstF5I GGATG 2 cut(s) 499, 551
BstKTI GATC 3 cut(s) 274, 501, 585
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 3 cut(s) 271, 498, 582
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 463, 615
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 499, 551
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 2 cut(s) 335, 450
CaiI CAGNNNCTG 1 cut(s) 312
CseI GACGC 1 cut(s) 126
CviAII CATG 4 cut(s) 328, 460, 472, 607
CviJI RGCY 5 cut(s) 5, 247, 410, 566, 617
CviKI_1 RGCY 5 cut(s) 5, 247, 410, 566, 617
DdeI CTNAG 5 cut(s) 6, 387, 467, 507, 591
DpnI GATC 3 cut(s) 273, 500, 584
DpnII GATC 3 cut(s) 271, 498, 582
Eam1104I CTCTTC 3 cut(s) 471, 481, 593
EarI CTCTTC 3 cut(s) 471, 481, 593
Eco31I GGTCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 260
FaeI CATG 4 cut(s) 331, 463, 475, 610
FaqI GGGAC 1 cut(s) 132
FatI CATG 4 cut(s) 327, 459, 471, 606
Fnu4HI GCNGC 3 cut(s) 452, 564, 604
FokI GGATG 2 cut(s) 506, 558
Fsp4HI GCNGC 3 cut(s) 452, 564, 604
GluI GCNGC 3 cut(s) 452, 564, 604
GsuI CTGGAG 2 cut(s) 244, 334
HgaI GACGC 1 cut(s) 126
Hin1II CATG 4 cut(s) 331, 463, 475, 610
HincII GTYRAC 2 cut(s) 19, 106
HindII GTYRAC 2 cut(s) 19, 106
HinfI GANTC 2 cut(s) 385, 514
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 19, 52, 106
Hpy188I TCNGA 3 cut(s) 116, 390, 430
Hpy188III TCNNGA 4 cut(s) 136, 179, 323, 575
Hpy8I GTNNAC 3 cut(s) 19, 52, 106
HpyAV CCTTC 3 cut(s) 62, 91, 133
HpyCH4III ACNGT 2 cut(s) 146, 636
HpyCH4IV ACGT 2 cut(s) 102, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 5 cut(s) 6, 387, 467, 507, 591
HpySE526I ACGT 2 cut(s) 102, 130
Hsp92II CATG 4 cut(s) 331, 463, 475, 610
Kzo9I GATC 3 cut(s) 271, 498, 582
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 9 cut(s) 65, 149, 247, 274, 298, 319, 367, 540, 560
Lsp1109I GCAGC 2 cut(s) 463, 615
LweI GCATC 1 cut(s) 217
MaeII ACGT 2 cut(s) 102, 130
MalI GATC 3 cut(s) 273, 500, 584
MboI GATC 3 cut(s) 271, 498, 582
MboII GAAGA 6 cut(s) 106, 281, 340, 488, 498, 610
MfeI CAATTG 2 cut(s) 35, 201
MflI RGATCY 1 cut(s) 271
MluCI AATT 5 cut(s) 35, 201, 236, 519, 570
MlyI GAGTC 1 cut(s) 379
MseI TTAA 2 cut(s) 230, 374
MslI CAYNNNNRTG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 2 cut(s) 35, 201
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 623
NdeII GATC 3 cut(s) 271, 498, 582
NlaIII CATG 4 cut(s) 331, 463, 475, 610
OliI CACNNNNGTG 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 514
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 3 cut(s) 453, 565, 605
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PsrI GAACNNNNNNTAC 2 cut(s) 532, 564
PstNI CAGNNNCTG 1 cut(s) 312
PsuI RGATCY 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 2 cut(s) 230, 374
SatI GCNGC 3 cut(s) 452, 564, 604
Sau3AI GATC 3 cut(s) 271, 498, 582
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 262
SetI ASST 7 cut(s) 24, 105, 133, 172, 412, 420, 435
SfaNI GCATC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 5 cut(s) 35, 201, 236, 519, 570
SsiI CCGC 1 cut(s) 563
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 146, 636
TaiI ACGT 2 cut(s) 105, 133
TasI AATT 5 cut(s) 35, 201, 236, 519, 570
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 2 cut(s) 230, 374
Tru9I TTAA 2 cut(s) 230, 374
TscAI CASTG 2 cut(s) 342, 450
TseI GCWGC 2 cut(s) 451, 603
TspRI CASTG 2 cut(s) 342, 450
Van91I CCANNNNNTGG 1 cut(s) 312
XapI RAATTY 2 cut(s) 519, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.