Rh7BG409200

Oligopeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0030484
Physical Location & Seq
Forward (+)
45968553 .. 45971428
2876 bp
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UTR
Exon/CDS
Intron
Rh7BG409200.1

Sequence Viewer

Length: 459 bp
ATGCTCCAAGGCACCACTTTGACCTATGTACGAACTGTTTTCCATGAATTTGGACATGCATTTCAGCTTGTATTGACAAAGCAAGATGAATTGCTAGTGGCTAGTTTTCGAAATATAGAGAAAGATTGTATTGAAGTACCCTCCATATTCCTGAACAAATGGTGTTACCACGTTCCACGGGTTTGGCACATAGATGTGAAATTATATTCTATCTCAAATGCTCACACCACTATTGGATACATATATTTTGATCCATTTTCTAGCCCTGAGAAAATGAGCGGGGCAGTGACGGGTGGTTTTTTTCCAGAAGTGTACGAATTGTTTTTCATAAATTTGGACATGCATTTCGGTTGTTTTTTTTTTGGACAAATGGTGTCACCACAGATAAGGAACGGGAAAGAATTTTATGAGACTGATGTGAGTGGGGGGATAAGAGATCGACGAAGAGCTAAGTGGTGA

Protein Analysis

152

Amino Acids

17.77

Weight (kDa)

6.58

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M3 PF01432 7 - 57 1.6e-08 Peptidase family M3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030484)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0233421
rosa_samantha Rh7BG409200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 279
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 3 cut(s) 47, 331, 401
AfaI GTAC 3 cut(s) 30, 138, 314
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 2 cut(s) 67, 449
AluI AGCT 2 cut(s) 67, 449
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 1 cut(s) 245
ApoI RAATTY 3 cut(s) 47, 331, 401
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AsuHPI GGTGA 1 cut(s) 369
AsuII TTCGAA 1 cut(s) 109
BanI GGYRCC 1 cut(s) 11
BciVI GTATCC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 3 cut(s) 95, 102, 261
BfuI GTATCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 13
Bpu14I TTCGAA 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 7, 176
BseDI CCNNGG 2 cut(s) 7, 176
BseMII CTCAG 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 109
Bsp143I GATC 2 cut(s) 250, 436
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 439
BspT104I TTCGAA 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 7, 176
BssMI GATC 2 cut(s) 250, 436
BssT1I CCWWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 267, 450
BstDSI CCRYGG 1 cut(s) 176
BstKTI GATC 2 cut(s) 253, 439
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 2 cut(s) 250, 436
BstNSI RCATGY 2 cut(s) 59, 343
BstXI CCANNNNNNTGG 2 cut(s) 50, 183
BsuI GTATCC 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
Csp6I GTAC 3 cut(s) 29, 137, 313
CviAII CATG 3 cut(s) 44, 56, 340
CviJI RGCY 4 cut(s) 67, 101, 264, 449
CviKI_1 RGCY 4 cut(s) 67, 101, 264, 449
CviQI GTAC 3 cut(s) 29, 137, 313
DdeI CTNAG 2 cut(s) 267, 450
DpnI GATC 2 cut(s) 252, 438
DpnII GATC 2 cut(s) 250, 436
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 2 cut(s) 61, 345
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 3 cut(s) 47, 59, 343
FatI CATG 3 cut(s) 43, 55, 339
FauI CCCGC 1 cut(s) 272
FspBI CTAG 3 cut(s) 95, 102, 261
Hin1II CATG 3 cut(s) 47, 59, 343
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 151, 305
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 444
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 59, 343
HpyF3I CTNAG 2 cut(s) 267, 450
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 3 cut(s) 47, 59, 343
Kzo9I GATC 2 cut(s) 250, 436
LguI GCTCTTC 1 cut(s) 439
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 3 cut(s) 164, 279, 318
MaeI CTAG 3 cut(s) 95, 102, 261
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 164, 286, 375
MalI GATC 2 cut(s) 252, 438
MbiI CCGCTC 1 cut(s) 279
MboI GATC 2 cut(s) 250, 436
MboII GAAGA 1 cut(s) 456
MluCI AATT 6 cut(s) 47, 89, 200, 317, 331, 401
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 2 cut(s) 61, 345
MslI CAYNNNNRTG 2 cut(s) 192, 194
NdeII GATC 2 cut(s) 250, 436
NlaIII CATG 3 cut(s) 47, 59, 343
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 2 cut(s) 286, 375
NsiI ATGCAT 2 cut(s) 61, 345
NspI RCATGY 2 cut(s) 59, 343
NspV TTCGAA 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 13
RsaI GTAC 3 cut(s) 30, 138, 314
RsaNI GTAC 3 cut(s) 29, 137, 313
RseI CAYNNNNRTG 2 cut(s) 192, 194
SapI GCTCTTC 1 cut(s) 439
Sau3AI GATC 2 cut(s) 250, 436
SetI ASST 4 cut(s) 26, 69, 174, 451
SfuI TTCGAA 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 192, 194
Sse9I AATT 6 cut(s) 47, 89, 200, 317, 331, 401
SsiI CCGC 1 cut(s) 279
SspMI CTAG 3 cut(s) 95, 102, 261
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 109, 439
TasI AATT 6 cut(s) 47, 89, 200, 317, 331, 401
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 286, 375
Tsp45I GTSAC 2 cut(s) 286, 375
TspDTI ATGAA 3 cut(s) 60, 102, 316
TspRI CASTG 1 cut(s) 291
XapI RAATTY 3 cut(s) 47, 331, 401
XceI RCATGY 2 cut(s) 59, 343
XspI CTAG 3 cut(s) 95, 102, 261
Zsp2I ATGCAT 2 cut(s) 61, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.