Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0032444

Physical Location & Seq

Genomic Coordinates Forward (+)

7305621 .. 7307445

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG096600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTGGGGGAGCCTATGAGGGATGGAGCTCGTGAGCTGAAGTTAGGACCCTCTCTTATGAAGATGCGTGAGCCTTACAAGAAGATGGGTGAGGCTTATGAGGATGCACCAATGGATGTAGCCCTATCCCCTGAGCTGGGTGAGGATTACGAGTATGCACCACTGGAGTCACCCCTAACCCCGCGTTCTAGGCAAGCTTTGTGGAGCTACGCAGGCGTCATGAGGAACAGAATCAAAGGAAAGGTTGCTCTGAAGCTTGACCCAGCTGACAAGAGGAAGATTGAGGATGCTATTGATTGTGCCATTCAGTATGTTGCTGACAATCGACTCACAGAGGAGGAATATGATGCCAAGCTTAAGGAGATTGATGGCATTTGCACCCCTATCTTGATCAAGATAGCATTTGCCATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

138

Amino Acids

15.58

Weight (kDa)

4.95

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032444)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug06G0490100
rosa_samantha	Rh7CG096600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	59, 272
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	136, 137
AflII	CTTAAG	1 cut(s)	356
AluBI	AGCT	8 cut(s)	29, 37, 136, 197, 207, 256, 266, 355
AluI	AGCT	8 cut(s)	29, 37, 136, 197, 207, 256, 266, 355
Alw21I	GWGCWC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	101, 152, 162
AvaII	GGWCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	3 cut(s)	17, 79, 362
BclI	TGATCA	1 cut(s)	390
BfaI	CTAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	12, 49
BmsI	GCATC	4 cut(s)	54, 94, 277, 337
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 137
Bse1I	ACTGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	28, 109, 121, 292
BseLI	CCNNNNNNNGG	2 cut(s)	136, 137
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	350
BseYI	CCCAGC	2 cut(s)	136, 262
Bsh1236I	CGCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	136, 137
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	12, 49
BspTI	CTTAAG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	1 cut(s)	390
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	195, 214
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	4 cut(s)	28, 109, 121, 292
BstFNI	CGCG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 213
BstUI	CGCG	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	28, 109, 121, 292
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	195, 214
CciI	TCATGA	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	182, 217
CviAII	CATG	2 cut(s)	220, 409
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	59, 272
EcoICRI	GAGCTC	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	223, 412
FaiI	YATR	8 cut(s)	17, 59, 99, 156, 221, 312, 345, 410
FatI	CATG	2 cut(s)	219, 408
FauI	CCCGC	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	390
FokI	GGATG	4 cut(s)	35, 116, 128, 299
FriOI	GRGCYC	1 cut(s)	31
FspBI	CTAG	1 cut(s)	189
GsaI	CCCAGC	2 cut(s)	140, 266
GsuI	CTGGAG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	223, 412
HindIII	AAGCTT	3 cut(s)	195, 254, 353
HinfI	GANTC	3 cut(s)	167, 231, 327
HphI	GGTGA	3 cut(s)	101, 152, 162
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	4 cut(s)	32, 220, 388, 394
HpyCH4V	TGCA	3 cut(s)	107, 158, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 213
HpyF3I	CTNAG	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	223, 412
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	3 cut(s)	10, 26, 204
LpnPI	CCDG	5 cut(s)	122, 144, 149, 198, 276
LweI	GCATC	4 cut(s)	54, 94, 277, 337
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	3 cut(s)	73, 94, 289
MhlI	GDGCHC	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	176, 321
MseI	TTAA	2 cut(s)	357, 415
MspA1I	CMGCKG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	190, 213
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	2 cut(s)	223, 412
NlaIV	GGNNCC	2 cut(s)	12, 49
NmuCI	GTSAC	1 cut(s)	168
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	231
PleI	GAGTC	2 cut(s)	175, 321
PpsI	GAGTC	2 cut(s)	175, 321
PpuMI	RGGWCCY	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	47
PspFI	CCCAGC	2 cut(s)	136, 262
PspN4I	GGNNCC	2 cut(s)	12, 49
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	357, 415
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	176, 321
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	9 cut(s)	31, 39, 138, 199, 209, 246, 258, 268, 357
SfaNI	GCATC	4 cut(s)	54, 94, 277, 337
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	189
SstI	GAGCTC	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	408
TaqI	TCGA	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	357, 415
Tru9I	TTAA	2 cut(s)	357, 415
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	168
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.