Rorug06G0490100
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003158
Physical Location & Seq
Reverse (-)
60829481 .. 60832092
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0490100.1

Sequence Viewer

Length: 711 bp
ATGAGCGGCGACGATGATAACCTGAAACGGAGCAGCCAATGGCCGCGGTCGCCGGGCAGGCCCTATCAGAACAAAGAGGAAGACATGAAGCTCTGGGGGATTTTCGTCTTTGGCTTCATTGGCGCCACCGCAACTACTTTGGCGGTTTTTCAGCTTCGTAGGACTGTTGATTGGGTCTATACTCAGTTGTTCAGATCACAGTCGTCATCATGGAGAGGAGGGAGTCGGACATCTTTTCAGGAGGAAGCATGGAAAAGATATAATCGGCGCATGCAGGAGGAGTATGAAGAAGAATTGGAGAGAGTGGAACGTATAAGGCGTATGCAGAATGTGTTCAATAGAGAGAGGAACAAATACAAAAGGGGCTATGAGACCTGGAGGGAAAATGGTCAGGGTCAATATCATCAACATTTCCAAAGAGAGGATTGGTATTGGAAGACTGAGACATCCTTCAAAGACCGGAGGAGTAACTACAGGGAAACTCCTAGAGAACATGCCAACTATTTGTTATCGCAGCACTACTCAATTTTAGGCCTTGACAGGTTTAGAAAAGCACCTTACACAGATGCTGAGATTAAGACAGCATTTAGGACCAAGGCAAAGGAATTTCACCCAGATCAAAACCAAGATAATAAAGAGGCCGCTGAAGCAAAGTTCAAAGAAGTAATGGTGTCCTATGAGGCCATAAAGAAGGAGAGGGGAAACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

236

Amino Acids

28.75

Weight (kDa)

9.55

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 173 - 232 1.9e-12 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 46
AciI CCGC 6 cut(s) 6, 44, 46, 129, 143, 642
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 1 cut(s) 605
AcuI CTGAAG 1 cut(s) 666
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 3 cut(s) 337, 454, 658
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 2 cut(s) 91, 154
AluI AGCT 2 cut(s) 91, 154
Alw26I GTCTC 2 cut(s) 365, 437
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 5 cut(s) 41, 59, 532, 639, 681
ApeKI GCWGC 2 cut(s) 33, 514
ApoI RAATTY 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 2 cut(s) 125, 270
AspS9I GGNCC 2 cut(s) 60, 591
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 602
AvaII GGWCC 1 cut(s) 591
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 87, 443
BbvI GCAGC 2 cut(s) 45, 526
BciT130I CCWGG 1 cut(s) 376
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 365, 437
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 472
BfoI RGCGCY 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 5 cut(s) 7, 34, 44, 515, 642
BlsI GCNGC 5 cut(s) 8, 35, 45, 516, 643
Bme1390I CCNGG 2 cut(s) 54, 376
Bme18I GGWCC 1 cut(s) 591
BmgT120I GGNCC 2 cut(s) 60, 591
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 54, 376
BmsI GCATC 1 cut(s) 556
BpiI GAAGAC 2 cut(s) 87, 443
BpmI CTGGAG 1 cut(s) 397
BpuMI CCSGG 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 44, 594
BsaWI WCCGGW 1 cut(s) 459
Bsc4I CCNNNNNNNGG 1 cut(s) 421
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 44, 594
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 197, 432, 561
BseRI GAGGAG 3 cut(s) 231, 293, 478
BseXI GCAGC 2 cut(s) 45, 526
Bsh1236I CGCG 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 5 cut(s) 43, 61, 534, 641, 683
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 53, 460
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 365, 437
BsnI GGCC 5 cut(s) 43, 61, 534, 641, 683
Bso31I GGTCTC 1 cut(s) 365
Bsp143I GATC 2 cut(s) 194, 616
BspACI CCGC 6 cut(s) 6, 44, 46, 129, 143, 642
BspANI GGCC 5 cut(s) 43, 61, 534, 641, 683
BspCNI CTCAG 3 cut(s) 196, 433, 562
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 44, 594
BssMI GATC 2 cut(s) 194, 616
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 166, 201
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 59, 272
BstDEI CTNAG 3 cut(s) 183, 441, 570
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 270
BstKTI GATC 2 cut(s) 197, 619
BstMAI GTCTC 2 cut(s) 365, 437
BstMBI GATC 2 cut(s) 194, 616
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 4 cut(s) 49, 58, 120, 647
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 2 cut(s) 274, 497
BstSCI CCNGG 2 cut(s) 52, 374
BstSFI CTRYAG 1 cut(s) 472
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 45, 526
BstV2I GAAGAC 2 cut(s) 87, 443
BsuRI GGCC 5 cut(s) 43, 61, 534, 641, 683
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 446
Cac8I GCNNGC 2 cut(s) 59, 272
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 2 cut(s) 125, 270
Cfr13I GGNCC 2 cut(s) 60, 591
Cfr42I CCGCGG 1 cut(s) 47
CviAII CATG 5 cut(s) 85, 210, 249, 271, 494
DdeI CTNAG 3 cut(s) 183, 441, 570
DinI GGCGCC 1 cut(s) 124
DpnI GATC 2 cut(s) 196, 618
DpnII GATC 2 cut(s) 194, 616
EaeI YGGCCR 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 594
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 5 cut(s) 88, 213, 252, 274, 497
FatI CATG 5 cut(s) 84, 209, 248, 270, 493
Fnu4HI GCNGC 5 cut(s) 7, 34, 44, 515, 642
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 5 cut(s) 7, 34, 44, 515, 642
FspBI CTAG 1 cut(s) 486
GlaI GCGC 2 cut(s) 124, 269
GluI GCNGC 5 cut(s) 7, 34, 44, 515, 642
GsuI CTGGAG 1 cut(s) 397
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 5 cut(s) 43, 61, 534, 641, 683
HapII CCGG 2 cut(s) 53, 460
HhaI GCGC 2 cut(s) 125, 270
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 88, 213, 252, 274, 497
Hin6I GCGC 2 cut(s) 123, 268
HinP1I GCGC 2 cut(s) 123, 268
HinfI GANTC 1 cut(s) 223
HpaII CCGG 2 cut(s) 53, 460
HphI GGTGA 1 cut(s) 602
Hpy188I TCNGA 3 cut(s) 69, 194, 228
Hpy188III TCNNGA 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 460, 685
HpyCH4III ACNGT 2 cut(s) 166, 201
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 274, 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 58, 120, 647
HpyF3I CTNAG 3 cut(s) 183, 441, 570
HpySE526I ACGT 1 cut(s) 310
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 88, 213, 252, 274, 497
HspAI GCGC 2 cut(s) 123, 268
KasI GGCGCC 1 cut(s) 122
KspI CCGCGG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 194, 616
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 2 cut(s) 45, 526
LweI GCATC 1 cut(s) 556
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 467
MalI GATC 2 cut(s) 196, 618
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 194, 616
MboII GAAGA 4 cut(s) 92, 299, 302, 448
MluCI AATT 3 cut(s) 293, 525, 605
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 46, 644
MspI CCGG 2 cut(s) 53, 460
MspR9I CCNGG 2 cut(s) 54, 376
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 4 cut(s) 49, 58, 120, 647
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 1 cut(s) 54
NdeII GATC 2 cut(s) 194, 616
NlaIII CATG 5 cut(s) 88, 213, 252, 274, 497
NlaIV GGNNCC 1 cut(s) 124
NspI RCATGY 2 cut(s) 274, 497
PaeI GCATGC 1 cut(s) 274
PceI AGGCCT 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 5 cut(s) 8, 35, 45, 516, 643
PleI GAGTC 1 cut(s) 231
PluTI GGCGCC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 60, 591
PstNI CAGNNNCTG 1 cut(s) 569
SacII CCGCGG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 5 cut(s) 7, 34, 44, 515, 642
Sau3AI GATC 2 cut(s) 194, 616
Sau96I GGNCC 2 cut(s) 60, 591
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 2 cut(s) 54, 376
SetI ASST 8 cut(s) 24, 93, 156, 313, 377, 545, 559, 708
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 472
SfoI GGCGCC 1 cut(s) 124
Sfr303I CCGCGG 1 cut(s) 47
SgrBI CCGCGG 1 cut(s) 47
SinI GGWCC 1 cut(s) 591
SphI GCATGC 1 cut(s) 274
Sse9I AATT 3 cut(s) 293, 525, 605
SseBI AGGCCT 1 cut(s) 534
SsiI CCGC 6 cut(s) 6, 44, 46, 129, 143, 642
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 1 cut(s) 486
StuI AGGCCT 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 52, 374
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 2 cut(s) 166, 201
TaiI ACGT 1 cut(s) 313
TasI AATT 3 cut(s) 293, 525, 605
TauI GCSGC 3 cut(s) 9, 46, 644
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseI GCWGC 2 cut(s) 33, 514
TspDTI ATGAA 3 cut(s) 101, 106, 300
TspGWI ACGGA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 591
XapI RAATTY 1 cut(s) 605
XceI RCATGY 2 cut(s) 274, 497
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.