Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003158

Physical Location & Seq

Genomic Coordinates Reverse (-)

17138927 .. 17141293

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCGTCAAGTTTTTGACGTGGCGGGATCTCATTGGTCCATTGAACGTGGCACATCTATATGTACAAGGCTCAGAACCCTTTCCCAGAGAGAGCGGACTCGTCTAGGAACTTCGACGAGAGAGAGTGAGAGAGATACAGAGGAGAGAGAGAGTTTTAGAGAGAGAAAGATGGTTAGGGTTCGCGGTGGTGTTCTTCCGGTGCTGCTGGTGCTGGTAGCTTGCTTTGCATTTCAGCAGCTATCTGCTTCCGACGATACGGTATTTTACGATTCGTTTGATGACGCATTCGAGGGCCGATGGATCGTTTCTAGCAAAGAAGAGTACCAAGGTGTGTGGAGTCACTCGAAGAGCGAGGGACATGAGGATTACGGGCTTCTTGTGAGTGAGCCTGCCAAGAAGTACGCAATAGTGAAGGAGCTTGAGAAGCCTGAGAGTCTGAATGATGGAACTATTGTCCTCCAATTTGAGACTCGTCTCCAGAACGGGCTTGAATGTGGTGGTGCCTATCTGAAATACCTTCGACCTCAGGAGGCTGGATGGGAACCTAAGATATTCGACAATGAGTCTCCTTATTCGATCATGTTTGGACCTGACAAATGTGGGCTCACAAACAAGGTTCACTTCATTTTCAAGCACAAGAACCCCAAGAGCGGGGAGTACGTTGAACACCATTTGACGACTCCACCCTCTGTCCCAGCTGACAAACTTACTCATGTGTACACTGCCATTCTTAAACCCAATAACGAGTTGGTAATTCTGGTTGATGGGGAAGAGAAGAAGAAGGCGAATTTCCTATCGGCTGATGATTTCATGCCACCTCTTATTCCTACCAAGACAATCCCTGATCCAGAGGATAAGAAGCCTGAGGATTGGGATGAGAGAGCCAAGATTCAAGACCCAAATGCTGTAAAGCCAGAGGACTGGGATGAGGATGCCCCAATGGAAATTGTAGATGAAGAAGCAGAGAAACCTGAAGGATGGTTGGATGATGAGCCTGAGGAGATAGATGATCCTGATTCCACGAAACCAGAAGACTGGGATGATGAGGAGGATGGTGAATGGGAAGCCCCAAGGATCGAGAACCCGAAGTGTGTGACCGCCCCTGGTTGCGGTGAATGGAAGAAGCCAATGAAGAGGAACCCAGCTTACAAGGGAAAATGGCATGCCCCACTTATCGATAACCCCAGTTACAAGGGTATATGGAAGCCTCAGGAGATTCCAAACCCCAGCTACTTTGAAGCTGACAAACCCAACTTTGAGCCTATCGCAGCTGTCGGCATTGATGAGTTAAGGGATCGATCTGGACGATGCAAGATGGTATATTGTTTGACAACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko04918 ko05166 map04141 map04145 map04612 map04918 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

447

Amino Acids

51.09

Weight (kDa)

4.82

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07340 AT5G07340 AT5G61790
fragaria_vesca	FvH4_4g22170 FvH4_5g09940
malus_domestica	MD00G1076300.v1.1 MD08G1097600.v1.1 MD08G1097700.v1.1 MD13G1134200.v1.1 MD14G1144700.v1.1 MD16G1144800.v1.1
prunus_persica	Prupe.1G211400_v2.0.a1 Prupe.5G139100_v2.0.a1 Prupe.5G139100_v2.0.a1
pyrus_communis	pycom06g11940 pycom13g11700 pycom14g12020 pycom16g11430
rosa_chinensis	RchiOBHm_Chr4g0428401 RchiOBHm_Chr7g0188351
rosa_laevigata	RLG00000004706 RLG00000007154
rosa_multiflora	Rmu_sc0004698.1_g000004 Rmu_sc0008750.1_g000004
rosa_roxburghii	Rroxscaffold_3G00266480 Rroxscaffold_5G00370070
rosa_rugosa	Rorug04G0225200 Rorug06G0490000 Rorug06G0490100
rosa_samantha	Rh4AG282400 Rh4BG288000 Rh4CG303600 Rh4DG285100 Rh7BG096200 Rh7CG096500
rosa_wichuraiana	Rw4G024510 Rw7G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccBSI	CCGCTC	2 cut(s)	94, 651
AccII	CGCG	1 cut(s)	183
AciI	CCGC	6 cut(s)	23, 94, 183, 651, 1098, 1110
AclWI	GGATC	6 cut(s)	34, 308, 839, 1004, 1082, 1302
AcsI	RAATTY	1 cut(s)	787
AcuI	CTGAAG	1 cut(s)	993
AfaI	GTAC	5 cut(s)	64, 323, 401, 659, 719
AfiI	CCNNNNNNNGG	3 cut(s)	650, 651, 1109
AgsI	TTSAA	6 cut(s)	44, 491, 631, 665, 893, 1238
AhdI	GACNNNNNGTC	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	1102
AluBI	AGCT	8 cut(s)	218, 238, 418, 698, 1145, 1230, 1241, 1271
AluI	AGCT	8 cut(s)	218, 238, 418, 698, 1145, 1230, 1241, 1271
Alw26I	GTCTC	3 cut(s)	461, 479, 570
AlwI	GGATC	6 cut(s)	34, 308, 839, 1004, 1082, 1302
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	3 cut(s)	202, 235, 1268
ApoI	RAATTY	1 cut(s)	787
Asp700I	GAANNNNTTC	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	36, 292, 587
AsuHPI	GGTGA	2 cut(s)	1067, 1124
AvaII	GGWCC	2 cut(s)	36, 587
AxyI	CCTNAGG	4 cut(s)	525, 864, 996, 1209
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	1038
BbvI	GCAGC	3 cut(s)	189, 247, 1280
BccI	CCATC	8 cut(s)	163, 291, 437, 531, 758, 972, 1046, 1309
BciT130I	CCWGG	1 cut(s)	1104
BcoDI	GTCTC	3 cut(s)	461, 479, 570
BfaI	CTAG	2 cut(s)	104, 309
BisI	GCNGC	3 cut(s)	203, 236, 1269
BlsI	GCNGC	3 cut(s)	204, 237, 1270
Bme1390I	CCNGG	1 cut(s)	1104
Bme18I	GGWCC	2 cut(s)	36, 587
BmeRI	GACNNNNNGTC	1 cut(s)	562
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	36, 292, 587
BmiI	GGNNCC	3 cut(s)	502, 543, 1139
BmrFI	CCNGG	1 cut(s)	1104
BmrI	ACTGGG	3 cut(s)	931, 1045, 1179
BmsI	GCATC	2 cut(s)	922, 1298
BmuI	ACTGGG	3 cut(s)	931, 1045, 1179
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	440
Bsa29I	ATCGAT	2 cut(s)	1176, 1297
BsaJI	CCNNGG	3 cut(s)	325, 1070, 1102
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	3 cut(s)	650, 651, 1109
Bse1I	ACTGG	3 cut(s)	926, 1040, 1185
Bse21I	CCTNAGG	4 cut(s)	525, 864, 996, 1209
BseBI	CCWGG	1 cut(s)	1104
BseCI	ATCGAT	2 cut(s)	1176, 1297
BseDI	CCNNGG	3 cut(s)	325, 1070, 1102
BseGI	GGATG	8 cut(s)	542, 880, 931, 937, 983, 991, 1045, 1057
BseLI	CCNNNNNNNGG	3 cut(s)	650, 651, 1109
BseMII	CTCAG	6 cut(s)	85, 420, 539, 855, 987, 1223
BseNI	ACTGG	3 cut(s)	926, 1040, 1185
BseRI	GAGGAG	3 cut(s)	155, 1013, 1061
BseXI	GCAGC	3 cut(s)	189, 247, 1280
BseYI	CCCAGC	3 cut(s)	694, 1141, 1226
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	500
BshVI	ATCGAT	2 cut(s)	1176, 1297
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	2 cut(s)	369, 677
BslI	CCNNNNNNNGG	3 cut(s)	650, 651, 1109
BsmAI	GTCTC	3 cut(s)	461, 479, 570
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	369, 677
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp1407I	TGTACA	2 cut(s)	62, 717
Bsp143I	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
BspACI	CCGC	6 cut(s)	23, 94, 183, 651, 1098, 1110
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	6 cut(s)	84, 421, 538, 856, 988, 1222
BspDI	ATCGAT	2 cut(s)	1176, 1297
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	502, 543, 1139
BspPI	GGATC	6 cut(s)	34, 308, 839, 1004, 1082, 1302
BspQI	GCTCTTC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	500
BsrBI	CCGCTC	2 cut(s)	94, 651
BsrGI	TGTACA	2 cut(s)	62, 717
BsrI	ACTGG	3 cut(s)	926, 1040, 1185
BssECI	CCNNGG	3 cut(s)	325, 1070, 1102
BssMI	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
BssT1I	CCWWGG	2 cut(s)	325, 1070
Bst2UI	CCWGG	1 cut(s)	1104
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	4 cut(s)	312, 341, 765, 1127
BstAUI	TGTACA	2 cut(s)	62, 717
BstC8I	GCNNGC	3 cut(s)	220, 390, 1164
BstDEI	CTNAG	7 cut(s)	71, 429, 525, 546, 864, 996, 1209
BstF5I	GGATG	8 cut(s)	542, 880, 931, 937, 983, 991, 1045, 1057
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	8 cut(s)	29, 303, 579, 847, 1012, 1077, 1297, 1301
BstMAI	GTCTC	3 cut(s)	461, 479, 570
BstMBI	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 224, 424
BstNI	CCWGG	1 cut(s)	1104
BstNSI	RCATGY	1 cut(s)	1166
BstSCI	CCNGG	1 cut(s)	1102
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	189, 247, 1280
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	2 cut(s)	921, 1035
BstYI	RGATCY	1 cut(s)	26
Bsu15I	ATCGAT	2 cut(s)	1176, 1297
Bsu36I	CCTNAGG	4 cut(s)	525, 864, 996, 1209
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	2 cut(s)	1176, 1297
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	8 cut(s)	542, 880, 931, 937, 983, 991, 1045, 1057
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	3 cut(s)	220, 390, 1164
Cfr13I	GGNCC	3 cut(s)	36, 292, 587
ClaI	ATCGAT	2 cut(s)	1176, 1297
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	5 cut(s)	63, 322, 400, 658, 718
CspCI	CAANNNNNGTGG	2 cut(s)	314, 349
CviAII	CATG	5 cut(s)	359, 580, 713, 811, 1163
CviQI	GTAC	5 cut(s)	63, 322, 400, 658, 718
DdeI	CTNAG	7 cut(s)	71, 429, 525, 546, 864, 996, 1209
DpnI	GATC	8 cut(s)	28, 302, 578, 846, 1011, 1076, 1296, 1300
DpnII	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
DriI	GACNNNNNGTC	1 cut(s)	562
Eam1104I	CTCTTC	4 cut(s)	312, 341, 765, 1127
Eam1105I	GACNNNNNGTC	1 cut(s)	562
EarI	CTCTTC	4 cut(s)	312, 341, 765, 1127
Eco130I	CCWWGG	2 cut(s)	325, 1070
Eco24I	GRGCYC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	36, 587
Eco57I	CTGAAG	1 cut(s)	993
Eco81I	CCTNAGG	4 cut(s)	525, 864, 996, 1209
EcoRII	CCWGG	1 cut(s)	1102
EcoT14I	CCWWGG	2 cut(s)	325, 1070
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	325, 1070
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	5 cut(s)	362, 583, 716, 814, 1166
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FaqI	GGGAC	2 cut(s)	369, 677
FatI	CATG	5 cut(s)	358, 579, 712, 810, 1162
FauI	CCCGC	2 cut(s)	16, 644
Fnu4HI	GCNGC	3 cut(s)	203, 236, 1269
FokI	GGATG	8 cut(s)	549, 887, 938, 944, 990, 998, 1052, 1064
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	3 cut(s)	203, 236, 1269
FspBI	CTAG	2 cut(s)	104, 309
GluI	GCNGC	3 cut(s)	203, 236, 1269
GsaI	CCCAGC	3 cut(s)	698, 1145, 1230
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	290
Hin1II	CATG	5 cut(s)	362, 583, 716, 814, 1166
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	1067, 1124
Hpy166II	GTNNAC	3 cut(s)	619, 718, 720
Hpy188I	TCNGA	4 cut(s)	74, 250, 438, 510
Hpy188III	TCNNGA	8 cut(s)	478, 527, 848, 893, 1013, 1078, 1211, 1302
Hpy8I	GTNNAC	3 cut(s)	619, 718, 720
Hpy99I	CGWCG	2 cut(s)	118, 254
HpyAV	CCTTC	4 cut(s)	406, 527, 775, 968
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	3 cut(s)	18, 46, 660
HpyCH4V	TGCA	2 cut(s)	227, 1311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 224, 424
HpyF3I	CTNAG	7 cut(s)	71, 429, 525, 546, 864, 996, 1209
HpySE526I	ACGT	3 cut(s)	18, 46, 660
Hsp92II	CATG	5 cut(s)	362, 583, 716, 814, 1166
Kzo9I	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	189, 247, 1280
LweI	GCATC	2 cut(s)	922, 1298
MaeI	CTAG	2 cut(s)	104, 309
MaeII	ACGT	3 cut(s)	18, 46, 660
MaeIII	GTNAC	3 cut(s)	338, 1093, 1187
MalI	GATC	8 cut(s)	28, 302, 578, 846, 1011, 1076, 1296, 1300
MbiI	CCGCTC	2 cut(s)	94, 651
MboI	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	4 cut(s)	461, 753, 787, 945
MlyI	GAGTC	6 cut(s)	91, 346, 442, 463, 572, 673
MmeI	TCCRAC	2 cut(s)	273, 963
MroXI	GAANNNNTTC	1 cut(s)	79
MseI	TTAA	2 cut(s)	732, 1289
MslI	CAYNNNNRTG	1 cut(s)	58
MspA1I	CMGCKG	2 cut(s)	698, 1271
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	1104
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	1104
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	208, 224, 424
NdeII	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
NlaIII	CATG	5 cut(s)	362, 583, 716, 814, 1166
NlaIV	GGNNCC	3 cut(s)	502, 543, 1139
NmuCI	GTSAC	2 cut(s)	338, 1093
NspI	RCATGY	1 cut(s)	1166
PaeI	GCATGC	1 cut(s)	1166
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	1303
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	79
PfeI	GAWTC	4 cut(s)	269, 889, 1016, 1216
PkrI	GCNGC	3 cut(s)	204, 237, 1270
PleI	GAGTC	6 cut(s)	91, 345, 441, 463, 571, 673
PpsI	GAGTC	6 cut(s)	91, 345, 441, 463, 571, 673
Psp6I	CCWGG	1 cut(s)	1102
PspFI	CCCAGC	3 cut(s)	694, 1141, 1226
PspGI	CCWGG	1 cut(s)	1102
PspN4I	GGNNCC	3 cut(s)	502, 543, 1139
PspPI	GGNCC	3 cut(s)	36, 292, 587
PsrI	GAACNNNNNNTAC	2 cut(s)	1130, 1162
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	2 cut(s)	698, 1271
RsaI	GTAC	5 cut(s)	64, 323, 401, 659, 719
RsaNI	GTAC	5 cut(s)	63, 322, 400, 658, 718
RseI	CAYNNNNRTG	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	732, 1289
SatI	GCNGC	3 cut(s)	203, 236, 1269
Sau3AI	GATC	8 cut(s)	26, 300, 576, 844, 1009, 1074, 1294, 1298
Sau96I	GGNCC	3 cut(s)	36, 292, 587
SchI	GAGTC	6 cut(s)	91, 346, 442, 463, 572, 673
ScrFI	CCNGG	1 cut(s)	1104
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	2 cut(s)	922, 1298
SinI	GGWCC	2 cut(s)	36, 587
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	1166
Sse9I	AATT	4 cut(s)	461, 753, 787, 945
SsiI	CCGC	6 cut(s)	23, 94, 183, 651, 1098, 1110
SspMI	CTAG	2 cut(s)	104, 309
StyD4I	CCNGG	1 cut(s)	1102
StyI	CCWWGG	2 cut(s)	325, 1070
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	3 cut(s)	21, 49, 663
TaqI	TCGA	9 cut(s)	113, 288, 344, 520, 555, 575, 1077, 1176, 1297
TasI	AATT	4 cut(s)	461, 753, 787, 945
TatI	WGTACW	2 cut(s)	62, 717
TfiI	GAWTC	4 cut(s)	269, 889, 1016, 1216
Tru1I	TTAA	2 cut(s)	732, 1289
Tru9I	TTAA	2 cut(s)	732, 1289
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	2 cut(s)	338, 1093
TseI	GCWGC	3 cut(s)	202, 235, 1268
Tsp45I	GTSAC	2 cut(s)	338, 1093
TspDTI	ATGAA	4 cut(s)	613, 799, 969, 1145
TspRI	CASTG	1 cut(s)	727
VpaK11BI	GGWCC	2 cut(s)	36, 587
XapI	RAATTY	1 cut(s)	787
XceI	RCATGY	1 cut(s)	1166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	79
XspI	CTAG	2 cut(s)	104, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.