Prupe.1G211400_v2.0.a1

Calnexin homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
22476674 .. 22479515
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G211400.1

Sequence Viewer

Length: 1641 bp
ATGGTCCTGATGGAAGGGAGGCGTAAGATCACTGAGCTTATGCTGCTGCTGCTGCTGATTGGTTGCTCTGCTTCTCAGATCCAAGCTTCTTCTGAAAACGAACCCGATGCGATCTTCTACGAGCCATTTTCTGAGTCATTTGAAGGTCGCTGGATCGTTTCTTCCAAGGATGAGTACAAAGGTGTCTGGAAACTGTCCAAGAGTGAGGGACATGATGATTATGGTCTTTTGGTCAGTGAGAAGGCGAGGAAGTATGCTGTAGTGAAAGACCTGGGTAAGGCTGTGAGCCTTAAGTATGGAACCATTGTCCTGCAGTTTGAGGTTAGGTTCCAGAATGGGCTTGAATGTGGCGGTGCTTACTTGAAATACCTCCGGCCCCAGGAGGCTGGATGGAAACCAAAGGAATTTGACAACGATTCTCCCTACTCCATTATGTTTGGACCTGACAAATGTGGCTCCACAAACAAGGTTCATTTCATCTTTAAGCACAAGAACCCCAAGAGTGGAGAGTATGTTGAGCACCATCTCAAGGACCCTCCATCTGTGCCCTCTGACAAACTCTCTCATGTCTACACTGCAATACTGAAACCTAACAATGAAGTTAGAATTATAATAGATGGGGAGGAGAAGAAGAAGGCAAATTTCCTTTCAGCTAATGATTTCGAGCCTGCCTTAATTCCGGCCAAGACAATTCCTGACCCAGATGATAAGAAGCCAGAGGACTGGGATGAGCGGGCAAAGATTCCAGATCCACATGCTGTGAAGCCAGATGATTGGGATGAGGATGCACCAATGGAAATCGAAGATGAGGATGCTGTAAAACCTGAAGGGTGGTTGGATGATGAGCCTGAAGAGATTGATGACCCTGAAGCTACAAAGCCAGAAGATTGGGACGATGAAGAGGATGGTGTATGGGAACCAACAAAAATGGATAACCCCAAGTGTTCGTTGGCACCAGGTTGTGGAGAATGGAAGAAGCCAATGAAGATAAATCCTGCTTATAAAGGAAAATGGAGCCCTCCTCTTATTGACAACCCCAGTTACAAGGGTATTTGGAAACCTCAAGAAATTCCAAACCCTAGCTACTTTGAGACTGAGAAGCCTGACTTTGAGGCCATCACTGCTATTGGCATTGAGATCTGGACAATGCAGGATGGCATATTGTTTGACAATATTCTCATAGCTGATGATGAGAAGGTTGCTGAATCTTATCGGCTAACAACATGGAAGCCGAAGTTTGAAAATGAGAAAGAGAAGCAGAAGGCTGAGGAAGAAGCTGCTGGTCTTTCAGACGGACTCTCAGGCTTCCAGAAAAAAATATTCGACGTTCTCAATAAAATAGCAGACGTTCCTTTCTTGGATGTGTACAAACCCAAGATCATTGACCTAATTGAGAAGGGAGAAAAACAGCCGAATATTACAATTGGTATCATTGTATCCATCGTGGTTGTTCTTTTGACAGTTGTCTTTAAAATCCTTTTTGGTGGCAAAAAACCCAAGGTCACTGTTCCTGAAACAGATAGGCCTGCAGCTGCAGAGGCTTCCAACACTCAAGGAAGCAGTGAGGAGAAGGAAGATGAGAGTGAGAAGGAAGATGCTGCTGCTCCTCCCCGCAGGCGGTCTACCAGAAGGGAAACTTAA

Protein Analysis

547

Amino Acids

61.73

Weight (kDa)

4.81

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 611, 1002
AccB1I GGYRCC 1 cut(s) 952
AccB7I CCANNNNNTGG 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 733
AccI GTMKAC 2 cut(s) 570, 1622
AciI CCGC 4 cut(s) 351, 733, 1612, 1618
AclWI GGATC 3 cut(s) 73, 161, 743
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 3 cut(s) 404, 640, 1068
AcuI CTGAAG 3 cut(s) 846, 870, 888
AfaI GTAC 2 cut(s) 176, 1367
AfiI CCNNNNNNNGG 6 cut(s) 277, 379, 503, 529, 962, 1617
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 4 cut(s) 143, 344, 364, 1241
AjnI CCWGG 3 cut(s) 270, 378, 955
AluBI AGCT 8 cut(s) 37, 86, 653, 872, 1083, 1184, 1277, 1532
AluI AGCT 8 cut(s) 37, 86, 653, 872, 1083, 1184, 1277, 1532
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 1085
AlwI GGATC 3 cut(s) 73, 161, 743
AoxI GGCC 4 cut(s) 374, 681, 1113, 1523
ApeKI GCWGC 9 cut(s) 43, 46, 49, 52, 1277, 1529, 1532, 1598, 1601
ApoI RAATTY 3 cut(s) 404, 640, 1068
AspS9I GGNCC 4 cut(s) 4, 375, 440, 532
AvaII GGWCC 3 cut(s) 4, 440, 532
BaeGI GKGCMC 1 cut(s) 549
BanI GGYRCC 1 cut(s) 952
BanII GRGCYC 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 1266
BbvI GCAGC 9 cut(s) 30, 33, 36, 39, 1264, 1519, 1541, 1585, 1588
BccI CCATC 9 cut(s) 4, 384, 531, 547, 611, 899, 1124, 1148, 1448
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 3 cut(s) 272, 380, 957
BciVI GTATCC 1 cut(s) 1447
BcoDI GTCTC 1 cut(s) 1085
BfaI CTAG 1 cut(s) 1080
BfmI CTRYAG 4 cut(s) 258, 311, 1527, 1533
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 1447
BglII AGATCT 1 cut(s) 1137
BisI GCNGC 9 cut(s) 44, 47, 50, 53, 1278, 1530, 1533, 1599, 1602
BlsI GCNGC 9 cut(s) 45, 48, 51, 54, 1279, 1531, 1534, 1600, 1603
Bme1390I CCNGG 3 cut(s) 272, 380, 957
Bme18I GGWCC 3 cut(s) 4, 440, 532
BmgT120I GGNCC 4 cut(s) 4, 375, 440, 532
BmiI GGNNCC 8 cut(s) 301, 329, 377, 457, 534, 918, 954, 1016
BmrFI CCNGG 3 cut(s) 272, 380, 957
BmrI ACTGGG 2 cut(s) 733, 1032
BmsI GCATC 4 cut(s) 97, 775, 802, 1585
BmuI ACTGGG 2 cut(s) 733, 1032
BoxI GACNNNNGTC 1 cut(s) 1463
BplI GAGNNNNNCTC 2 cut(s) 1006, 1038
Bpu10I CCTNAGC 1 cut(s) 1266
BpuEI CTTGAG 3 cut(s) 512, 1047, 1536
BsaJI CCNNGG 4 cut(s) 165, 271, 378, 1497
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 6 cut(s) 277, 379, 503, 529, 962, 1617
Bse1I ACTGG 2 cut(s) 728, 1038
BseBI CCWGG 3 cut(s) 272, 380, 957
BseDI CCNNGG 4 cut(s) 165, 271, 378, 1497
BseLI CCNNNNNNNGG 6 cut(s) 277, 379, 503, 529, 962, 1617
BseMII CTCAG 6 cut(s) 24, 89, 123, 1086, 1257, 1314
BseNI ACTGG 2 cut(s) 728, 1038
BseRI GAGGAG 4 cut(s) 638, 1011, 1580, 1596
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 9 cut(s) 30, 33, 36, 39, 1264, 1519, 1541, 1585, 1588
BshFI GGCC 4 cut(s) 376, 683, 1115, 1525
BshNI GGYRCC 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 2 cut(s) 373, 680
BslFI GGGAC 2 cut(s) 222, 905
BslI CCNNNNNNNGG 6 cut(s) 277, 379, 503, 529, 962, 1617
BsmAI GTCTC 1 cut(s) 1085
BsmFI GGGAC 2 cut(s) 222, 905
BsnI GGCC 4 cut(s) 376, 683, 1115, 1525
Bsp1286I GDGCHC 3 cut(s) 522, 549, 1019
Bsp1407I TGTACA 1 cut(s) 1365
Bsp143I GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
BspACI CCGC 4 cut(s) 351, 733, 1612, 1618
BspANI GGCC 4 cut(s) 376, 683, 1115, 1525
BspCNI CTCAG 6 cut(s) 25, 88, 124, 1087, 1258, 1313
BspLI GGNNCC 8 cut(s) 301, 329, 377, 457, 534, 918, 954, 1016
BspMAI CTGCAG 3 cut(s) 315, 1531, 1537
BspPI GGATC 3 cut(s) 73, 161, 743
BspT107I GGYRCC 1 cut(s) 952
BspTI CTTAAG 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 733
BsrGI TGTACA 1 cut(s) 1365
BsrI ACTGG 2 cut(s) 728, 1038
BssECI CCNNGG 4 cut(s) 165, 271, 378, 1497
BssMI GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
BssT1I CCWWGG 2 cut(s) 165, 1497
Bst2UI CCWGG 3 cut(s) 272, 380, 957
Bst4CI ACNGT 3 cut(s) 195, 1462, 1507
Bst6I CTCTTC 2 cut(s) 846, 894
BstAFI CTTAAG 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 1365
BstC8I GCNNGC 4 cut(s) 669, 735, 1527, 1616
BstDEI CTNAG 6 cut(s) 33, 75, 132, 1095, 1266, 1300
BstENI CCTNNNNNAGG 1 cut(s) 275
BstKTI GATC 7 cut(s) 30, 81, 114, 156, 751, 1140, 1380
BstMAI GTCTC 1 cut(s) 1085
BstMBI GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
BstMWI GCNNNNNNNGC 5 cut(s) 43, 49, 52, 1121, 1538
BstNI CCWGG 3 cut(s) 272, 380, 957
BstNSI RCATGY 1 cut(s) 758
BstPAI GACNNNNGTC 1 cut(s) 1463
BstSCI CCNGG 3 cut(s) 270, 378, 955
BstSFI CTRYAG 4 cut(s) 258, 311, 1527, 1533
BstSLI GKGCMC 1 cut(s) 549
BstV1I GCAGC 9 cut(s) 30, 33, 36, 39, 1264, 1519, 1541, 1585, 1588
BstX2I RGATCY 3 cut(s) 78, 748, 1137
BstXI CCANNNNNNTGG 4 cut(s) 386, 723, 774, 888
BstYI RGATCY 3 cut(s) 78, 748, 1137
BsuI GTATCC 1 cut(s) 1447
BsuRI GGCC 4 cut(s) 376, 683, 1115, 1525
BtsI GCAGTG 3 cut(s) 573, 1119, 1567
BtsIMutI CAGTG 6 cut(s) 30, 241, 573, 1119, 1503, 1567
Cac8I GCNNGC 4 cut(s) 669, 735, 1527, 1616
Cfr13I GGNCC 4 cut(s) 4, 375, 440, 532
CsiI ACCWGGT 1 cut(s) 955
Csp6I GTAC 2 cut(s) 175, 1366
CviAII CATG 4 cut(s) 212, 566, 755, 1224
CviQI GTAC 2 cut(s) 175, 1366
DdeI CTNAG 6 cut(s) 33, 75, 132, 1095, 1266, 1300
DpnI GATC 7 cut(s) 29, 80, 113, 155, 750, 1139, 1379
DpnII GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
DraI TTTAAA 1 cut(s) 1471
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 846, 894
EarI CTCTTC 2 cut(s) 846, 894
Eco130I CCWWGG 2 cut(s) 165, 1497
Eco147I AGGCCT 1 cut(s) 1525
Eco24I GRGCYC 1 cut(s) 1019
Eco47I GGWCC 3 cut(s) 4, 440, 532
Eco57I CTGAAG 3 cut(s) 846, 870, 888
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 3 cut(s) 270, 378, 955
EcoT14I CCWWGG 2 cut(s) 165, 1497
EcoT38I GRGCYC 1 cut(s) 1019
ErhI CCWWGG 2 cut(s) 165, 1497
FaeI CATG 4 cut(s) 215, 569, 758, 1227
FalI AAGNNNNNCTT 3 cut(s) 1091, 1123, 1621
FaqI GGGAC 2 cut(s) 222, 905
FatI CATG 4 cut(s) 211, 565, 754, 1223
FauI CCCGC 2 cut(s) 726, 1619
FblI GTMKAC 2 cut(s) 570, 1622
Fnu4HI GCNGC 9 cut(s) 44, 47, 50, 53, 1278, 1530, 1533, 1599, 1602
FriOI GRGCYC 1 cut(s) 1019
Fsp4HI GCNGC 9 cut(s) 44, 47, 50, 53, 1278, 1530, 1533, 1599, 1602
FspBI CTAG 1 cut(s) 1080
GluI GCNGC 9 cut(s) 44, 47, 50, 53, 1278, 1530, 1533, 1599, 1602
HaeIII GGCC 4 cut(s) 376, 683, 1115, 1525
HapII CCGG 2 cut(s) 373, 680
Hin1II CATG 4 cut(s) 215, 569, 758, 1227
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 5 cut(s) 134, 416, 742, 1205, 1296
HpaII CCGG 2 cut(s) 373, 680
Hpy166II GTNNAC 3 cut(s) 571, 1366, 1623
Hpy188I TCNGA 5 cut(s) 78, 94, 133, 553, 1291
Hpy188III TCNNGA 9 cut(s) 7, 187, 331, 695, 746, 1064, 1141, 1309, 1511
Hpy8I GTNNAC 3 cut(s) 571, 1366, 1623
Hpy99I CGWCG 1 cut(s) 1328
HpyCH4III ACNGT 3 cut(s) 195, 1462, 1507
HpyCH4IV ACGT 2 cut(s) 1326, 1347
HpyCH4V TGCA 6 cut(s) 313, 578, 788, 1150, 1529, 1535
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 49, 52, 1121, 1538
HpyF3I CTNAG 6 cut(s) 33, 75, 132, 1095, 1266, 1300
HpySE526I ACGT 2 cut(s) 1326, 1347
Hsp92II CATG 4 cut(s) 215, 569, 758, 1227
Kzo9I GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
LmnI GCTCC 3 cut(s) 461, 1014, 1609
Lsp1109I GCAGC 9 cut(s) 30, 33, 36, 39, 1264, 1519, 1541, 1585, 1588
LweI GCATC 4 cut(s) 97, 775, 802, 1585
MabI ACCWGGT 1 cut(s) 955
MaeI CTAG 1 cut(s) 1080
MaeII ACGT 2 cut(s) 1326, 1347
MaeIII GTNAC 2 cut(s) 1040, 1501
MalI GATC 7 cut(s) 29, 80, 113, 155, 750, 1139, 1379
MbiI CCGCTC 1 cut(s) 733
MboI GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
MfeI CAATTG 1 cut(s) 1422
MflI RGATCY 3 cut(s) 78, 748, 1137
MhlI GDGCHC 3 cut(s) 522, 549, 1019
MluCI AATT 8 cut(s) 404, 606, 640, 675, 690, 1068, 1389, 1422
MlyI GAGTC 2 cut(s) 143, 1290
MmeI TCCRAC 2 cut(s) 816, 1569
MseI TTAA 5 cut(s) 291, 483, 674, 1470, 1639
MspA1I CMGCKG 1 cut(s) 1532
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 2 cut(s) 373, 680
MspR9I CCNGG 3 cut(s) 272, 380, 957
MunI CAATTG 1 cut(s) 1422
MvaI CCWGG 3 cut(s) 272, 380, 957
MwoI GCNNNNNNNGC 5 cut(s) 43, 49, 52, 1121, 1538
NdeII GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
NlaIII CATG 4 cut(s) 215, 569, 758, 1227
NlaIV GGNNCC 8 cut(s) 301, 329, 377, 457, 534, 918, 954, 1016
NmuCI GTSAC 1 cut(s) 1501
NspI RCATGY 1 cut(s) 758
PceI AGGCCT 1 cut(s) 1525
PfeI GAWTC 3 cut(s) 416, 742, 1205
PflMI CCANNNNNTGG 1 cut(s) 962
PkrI GCNGC 9 cut(s) 45, 48, 51, 54, 1279, 1531, 1534, 1600, 1603
PleI GAGTC 2 cut(s) 142, 1290
PpsI GAGTC 2 cut(s) 142, 1290
PpuMI RGGWCCY 1 cut(s) 532
PshAI GACNNNNGTC 1 cut(s) 1463
PsiI TTATAA 2 cut(s) 611, 1002
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 3 cut(s) 270, 378, 955
PspGI CCWGG 3 cut(s) 270, 378, 955
PspN4I GGNNCC 8 cut(s) 301, 329, 377, 457, 534, 918, 954, 1016
PspPI GGNCC 4 cut(s) 4, 375, 440, 532
PspPPI RGGWCCY 1 cut(s) 532
PstI CTGCAG 3 cut(s) 315, 1531, 1537
PsuI RGATCY 3 cut(s) 78, 748, 1137
PvuII CAGCTG 1 cut(s) 1532
RsaI GTAC 2 cut(s) 176, 1367
RsaNI GTAC 2 cut(s) 175, 1366
SaqAI TTAA 5 cut(s) 291, 483, 674, 1470, 1639
SatI GCNGC 9 cut(s) 44, 47, 50, 53, 1278, 1530, 1533, 1599, 1602
Sau3AI GATC 7 cut(s) 27, 78, 111, 153, 748, 1137, 1377
Sau96I GGNCC 4 cut(s) 4, 375, 440, 532
SchI GAGTC 2 cut(s) 143, 1290
ScrFI CCNGG 3 cut(s) 272, 380, 957
SduI GDGCHC 3 cut(s) 522, 549, 1019
SexAI ACCWGGT 1 cut(s) 955
SfaNI GCATC 4 cut(s) 97, 775, 802, 1585
SfcI CTRYAG 4 cut(s) 258, 311, 1527, 1533
SinI GGWCC 3 cut(s) 4, 440, 532
SmlI CTYRAG 4 cut(s) 290, 527, 1062, 1551
SmoI CTYRAG 4 cut(s) 290, 527, 1062, 1551
Sse9I AATT 8 cut(s) 404, 606, 640, 675, 690, 1068, 1389, 1422
SseBI AGGCCT 1 cut(s) 1525
SsiI CCGC 4 cut(s) 351, 733, 1612, 1618
SspI AATATT 3 cut(s) 1174, 1320, 1417
SspMI CTAG 1 cut(s) 1080
StuI AGGCCT 1 cut(s) 1525
StyD4I CCNGG 3 cut(s) 270, 378, 955
StyI CCWWGG 2 cut(s) 165, 1497
TaaI ACNGT 3 cut(s) 195, 1462, 1507
TaiI ACGT 2 cut(s) 1329, 1350
TaqI TCGA 3 cut(s) 663, 801, 1323
TasI AATT 8 cut(s) 404, 606, 640, 675, 690, 1068, 1389, 1422
TatI WGTACW 2 cut(s) 174, 1365
TfiI GAWTC 3 cut(s) 416, 742, 1205
Tru1I TTAA 5 cut(s) 291, 483, 674, 1470, 1639
Tru9I TTAA 5 cut(s) 291, 483, 674, 1470, 1639
TscAI CASTG 6 cut(s) 37, 241, 580, 1126, 1510, 1567
TseFI GTSAC 1 cut(s) 1501
TseI GCWGC 9 cut(s) 43, 46, 49, 52, 1277, 1529, 1532, 1598, 1601
Tsp45I GTSAC 1 cut(s) 1501
TspDTI ATGAA 5 cut(s) 461, 466, 612, 912, 998
TspGWI ACGGA 1 cut(s) 1308
TspRI CASTG 6 cut(s) 37, 241, 580, 1126, 1510, 1567
Van91I CCANNNNNTGG 1 cut(s) 962
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 3 cut(s) 4, 440, 532
XagI CCTNNNNNAGG 1 cut(s) 275
XapI RAATTY 3 cut(s) 404, 640, 1068
XceI RCATGY 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmiI GTMKAC 2 cut(s) 570, 1622
XspI CTAG 1 cut(s) 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.