Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003158

Physical Location & Seq

Genomic Coordinates Reverse (-)

15120408 .. 15122374

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTACAAGTATCGGAGCTGTGTTTCCCAGAGAGGGGAGTTGTCAAAGAACTTCGAGGAGGGAGAGAGAGAGAGAGAGAGAGATACAGGAGAGAGTTTTAGAGAGAGAAAGATGGTTAAGGTTCGCGCTGGTGTTCTTCCGGTGCTGTTGCTTCTCGCAGCTTGCTTTGCATTTCAGCAGCTATCTGCTTCCGACGATACGGTGTTTTACGATTCGTTTGATGACACATTCGAAGGCCGATGGATCGTCTCCAGCAAAGAAGAGTATCAAGGTGTGTGGAGCCACTCGAAGAGTGAGGGTCATGAGGATTATGGGCTTCTTGTGAGTGAGAAGGCCAAGAAGTACGCAATCGTGAAGGAGCTTGAGAAGCCTGAGAGTCTGAATGATGGAACTATTGTTCTCCAATTTGAGACCCGTCTCCAGAATGGGCTTGAATGTGGTGGTGCCTATCTGAAATACCTTCGACCCCAGGAGGCTGGATGGGAACCTAAGATATTTGACAATGAGGCTCCTTATTCGATCATGTTTGGACCTGACAAATGTGGGCTCACAAACAAGGTTCACTTCATTTTCAAGCACAAGAACCCCAAGAGCGGGGAGTACGTTGAACACCATTTGACCACTCCACCTTCTGTCCCAGCTGACAAACTTACTCATGTGTACACTGCCATTCTGAAACCAAATAACGAGTTGGTAATTCTGGTTGACGGGGAAGAGAAGAAGAAGGCGAATTTCCTATCAGCTGATGATTTTATGCCACCGCTTATTCCTACGAAGACAATCCCTGATCCAGAGGATAAGAAGCCTGAGGACTGGGATGAGAGAGCCAAAATTCCAGACCCAAATGCTGTTAAGCCAGAGGATTGGGATGAGGACGCCCCAATGGAAATTGTTGATGAAGAAGCAGAGAAACCCGAAAGATGGTTGGATGATGAGCCTGAGGAGATAGATGATCCTGATGCCACAAAACCAGAAGATTGGGATGATGAGGAGGATGGTGAATGGGAAGCCCCAAGGATCGATAACCCGAAGTGTGTAACAGCCCCTGGTTGTGGCGAATGGAAGAAGCCAATGAAGAGAAACCCAGCTTACAAGGGAAAATGGCATGCTCCACTCATCGATAACCCCAGTTACAAGGGTATCTGGAAGCCTCAGGAGATTCCAAACCCCAGCTACTTTGAAGCTGACAAACCCAACTTTGAGCCTATCGCTGCTGTTGGCATTGATCGATCTGGACAATGCAAGATGGTATATTGTTTGACAACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko04918 ko05166 map04141 map04145 map04612 map04918 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

424

Amino Acids

48.46

Weight (kDa)

4.78

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07340 AT5G07340 AT5G61790
fragaria_vesca	FvH4_4g22170 FvH4_5g09940
malus_domestica	MD00G1076300.v1.1 MD08G1097600.v1.1 MD08G1097700.v1.1 MD13G1134200.v1.1 MD14G1144700.v1.1 MD16G1144800.v1.1
prunus_persica	Prupe.1G211400_v2.0.a1 Prupe.5G139100_v2.0.a1 Prupe.5G139100_v2.0.a1
pyrus_communis	pycom06g11940 pycom13g11700 pycom14g12020 pycom16g11430
rosa_chinensis	RchiOBHm_Chr4g0428401 RchiOBHm_Chr7g0188351
rosa_laevigata	RLG00000004706 RLG00000007154
rosa_multiflora	Rmu_sc0004698.1_g000004 Rmu_sc0008750.1_g000004
rosa_roxburghii	Rroxscaffold_3G00266480 Rroxscaffold_5G00370070
rosa_rugosa	Rorug04G0225200 Rorug06G0490000 Rorug06G0490100
rosa_samantha	Rh4AG282400 Rh4BG288000 Rh4CG303600 Rh4DG285100 Rh7BG096200 Rh7CG096500
rosa_wichuraiana	Rw4G024510 Rw7G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccBSI	CCGCTC	1 cut(s)	594
AccII	CGCG	1 cut(s)	126
AciI	CCGC	2 cut(s)	594, 761
AclWI	GGATC	4 cut(s)	251, 782, 947, 1025
AcsI	RAATTY	2 cut(s)	730, 831
AcyI	GRCGYC	1 cut(s)	876
AfaI	GTAC	4 cut(s)	5, 344, 602, 662
AfiI	CCNNNNNNNGG	6 cut(s)	33, 34, 593, 594, 921, 1052
AgsI	TTSAA	4 cut(s)	434, 574, 608, 1181
AjnI	CCWGG	2 cut(s)	468, 1045
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	9 cut(s)	18, 161, 181, 361, 641, 743, 1088, 1173, 1184
AluI	AGCT	9 cut(s)	18, 161, 181, 361, 641, 743, 1088, 1173, 1184
Alw26I	GTCTC	3 cut(s)	253, 404, 422
AlwI	GGATC	4 cut(s)	251, 782, 947, 1025
AlwNI	CAGNNNCTG	1 cut(s)	1046
AoxI	GGCC	2 cut(s)	235, 333
ApeKI	GCWGC	3 cut(s)	158, 178, 1211
ApoI	RAATTY	2 cut(s)	730, 831
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	1010
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	3 cut(s)	807, 939, 1152
BaeI	ACNNNNGTAYC	2 cut(s)	1123, 1156
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	782
BbvI	GCAGC	3 cut(s)	170, 190, 1198
BccI	CCATC	7 cut(s)	106, 234, 380, 474, 915, 989, 1240
BciT130I	CCWGG	2 cut(s)	470, 1047
BcoDI	GTCTC	3 cut(s)	253, 404, 422
BisI	GCNGC	3 cut(s)	159, 179, 1212
BlsI	GCNGC	3 cut(s)	160, 180, 1213
Bme1390I	CCNGG	2 cut(s)	470, 1047
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	4 cut(s)	281, 445, 486, 510
BmrFI	CCNGG	2 cut(s)	470, 1047
BmrI	ACTGGG	2 cut(s)	823, 1122
BmsI	GCATC	1 cut(s)	949
BmuI	ACTGGG	2 cut(s)	823, 1122
BpiI	GAAGAC	1 cut(s)	782
BpmI	CTGGAG	2 cut(s)	235, 404
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	383
Bsa29I	ATCGAT	3 cut(s)	1020, 1119, 1228
BsaHI	GRCGYC	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	3 cut(s)	468, 1013, 1045
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	6 cut(s)	33, 34, 593, 594, 921, 1052
Bse1I	ACTGG	2 cut(s)	818, 1128
Bse21I	CCTNAGG	3 cut(s)	807, 939, 1152
BseBI	CCWGG	2 cut(s)	470, 1047
BseCI	ATCGAT	3 cut(s)	1020, 1119, 1228
BseDI	CCNNGG	3 cut(s)	468, 1013, 1045
BseGI	GGATG	6 cut(s)	485, 823, 874, 934, 988, 1000
BseLI	CCNNNNNNNGG	6 cut(s)	33, 34, 593, 594, 921, 1052
BseMII	CTCAG	4 cut(s)	363, 798, 930, 1166
BseNI	ACTGG	2 cut(s)	818, 1128
BseRI	GAGGAG	3 cut(s)	71, 956, 1004
BseXI	GCAGC	3 cut(s)	170, 190, 1198
BseYI	CCCAGC	3 cut(s)	637, 1084, 1169
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	237, 335
BshNI	GGYRCC	1 cut(s)	443
BshVI	ATCGAT	3 cut(s)	1020, 1119, 1228
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	6 cut(s)	33, 34, 593, 594, 921, 1052
BsmAI	GTCTC	3 cut(s)	253, 404, 422
BsmBI	CGTCTC	2 cut(s)	253, 422
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	237, 335
Bso31I	GGTCTC	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp1407I	TGTACA	2 cut(s)	3, 660
Bsp143I	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
BspACI	CCGC	2 cut(s)	594, 761
BspANI	GGCC	2 cut(s)	237, 335
BspCNI	CTCAG	4 cut(s)	364, 799, 931, 1165
BspDI	ATCGAT	3 cut(s)	1020, 1119, 1228
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	281, 445, 486, 510
BspPI	GGATC	4 cut(s)	251, 782, 947, 1025
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	594
BsrGI	TGTACA	2 cut(s)	3, 660
BsrI	ACTGG	2 cut(s)	818, 1128
BssECI	CCNNGG	3 cut(s)	468, 1013, 1045
BssMI	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
BssNI	GRCGYC	1 cut(s)	876
BssT1I	CCWWGG	1 cut(s)	1013
Bst2UI	CCWGG	2 cut(s)	470, 1047
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	4 cut(s)	255, 284, 708, 1070
BstACI	GRCGYC	1 cut(s)	876
BstAUI	TGTACA	2 cut(s)	3, 660
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	163, 1107
BstDEI	CTNAG	5 cut(s)	372, 489, 807, 939, 1152
BstF5I	GGATG	6 cut(s)	485, 823, 874, 934, 988, 1000
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	7 cut(s)	246, 522, 790, 955, 1020, 1228, 1232
BstMAI	GTCTC	3 cut(s)	253, 404, 422
BstMBI	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 367
BstNI	CCWGG	2 cut(s)	470, 1047
BstNSI	RCATGY	1 cut(s)	1109
BstSCI	CCNGG	2 cut(s)	468, 1045
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	170, 190, 1198
BstV2I	GAAGAC	1 cut(s)	782
BstXI	CCANNNNNNTGG	3 cut(s)	476, 864, 978
Bsu15I	ATCGAT	3 cut(s)	1020, 1119, 1228
Bsu36I	CCTNAGG	3 cut(s)	807, 939, 1152
BsuRI	GGCC	2 cut(s)	237, 335
BsuTUI	ATCGAT	3 cut(s)	1020, 1119, 1228
BtsCI	GGATG	6 cut(s)	485, 823, 874, 934, 988, 1000
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	2 cut(s)	163, 1107
CaiI	CAGNNNCTG	1 cut(s)	1046
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	530
ClaI	ATCGAT	3 cut(s)	1020, 1119, 1228
CseI	GACGC	1 cut(s)	884
Csp6I	GTAC	4 cut(s)	4, 343, 601, 661
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	4 cut(s)	302, 523, 656, 1106
CviQI	GTAC	4 cut(s)	4, 343, 601, 661
DdeI	CTNAG	5 cut(s)	372, 489, 807, 939, 1152
DpnI	GATC	7 cut(s)	245, 521, 789, 954, 1019, 1227, 1231
DpnII	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
Eam1104I	CTCTTC	4 cut(s)	255, 284, 708, 1070
EarI	CTCTTC	4 cut(s)	255, 284, 708, 1070
Eco130I	CCWWGG	1 cut(s)	1013
Eco24I	GRGCYC	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	530
Eco81I	CCTNAGG	3 cut(s)	807, 939, 1152
EcoRII	CCWGG	2 cut(s)	468, 1045
EcoT14I	CCWWGG	1 cut(s)	1013
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	1013
Esp3I	CGTCTC	2 cut(s)	253, 422
FaeI	CATG	4 cut(s)	305, 526, 659, 1109
FaiI	YATR	7 cut(s)	303, 312, 524, 657, 755, 1107, 1252
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	4 cut(s)	301, 522, 655, 1105
FauI	CCCGC	1 cut(s)	587
Fnu4HI	GCNGC	3 cut(s)	159, 179, 1212
FokI	GGATG	6 cut(s)	492, 830, 881, 941, 995, 1007
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	159, 179, 1212
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	159, 179, 1212
GsaI	CCCAGC	3 cut(s)	641, 1088, 1173
GsuI	CTGGAG	2 cut(s)	235, 404
HaeIII	GGCC	2 cut(s)	237, 335
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	884
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	876
Hin1II	CATG	4 cut(s)	305, 526, 659, 1109
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	3 cut(s)	212, 376, 1159
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	1010
Hpy166II	GTNNAC	4 cut(s)	562, 661, 663, 706
Hpy188I	TCNGA	5 cut(s)	15, 193, 381, 453, 675
Hpy188III	TCNNGA	9 cut(s)	302, 352, 421, 791, 836, 956, 1144, 1154, 1233
Hpy8I	GTNNAC	4 cut(s)	562, 661, 663, 706
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	6 cut(s)	227, 325, 349, 470, 639, 718
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	2 cut(s)	170, 1242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 367
HpyF3I	CTNAG	5 cut(s)	372, 489, 807, 939, 1152
HpySE526I	ACGT	1 cut(s)	603
Hsp92I	GRCGYC	1 cut(s)	876
Hsp92II	CATG	4 cut(s)	305, 526, 659, 1109
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
LmnI	GCTCC	5 cut(s)	15, 279, 358, 514, 1114
Lsp1109I	GCAGC	3 cut(s)	170, 190, 1198
LweI	GCATC	1 cut(s)	949
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	2 cut(s)	1036, 1130
MalI	GATC	7 cut(s)	245, 521, 789, 954, 1019, 1227, 1231
MbiI	CCGCTC	1 cut(s)	594
MboI	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	5 cut(s)	404, 696, 730, 831, 888
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	216, 906
MseI	TTAA	2 cut(s)	117, 852
MspA1I	CMGCKG	2 cut(s)	641, 743
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	470, 1047
MvaI	CCWGG	2 cut(s)	470, 1047
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	167, 367
NdeII	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
NlaIII	CATG	4 cut(s)	305, 526, 659, 1109
NlaIV	GGNNCC	4 cut(s)	281, 445, 486, 510
NspI	RCATGY	1 cut(s)	1109
NspV	TTCGAA	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	1109
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	212, 1159
PkrI	GCNGC	3 cut(s)	160, 180, 1213
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	468, 1045
PspFI	CCCAGC	3 cut(s)	637, 1084, 1169
PspGI	CCWGG	2 cut(s)	468, 1045
PspN4I	GGNNCC	4 cut(s)	281, 445, 486, 510
PspPI	GGNCC	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	1046
PvuII	CAGCTG	2 cut(s)	641, 743
RsaI	GTAC	4 cut(s)	5, 344, 602, 662
RsaNI	GTAC	4 cut(s)	4, 343, 601, 661
SaqAI	TTAA	2 cut(s)	117, 852
SatI	GCNGC	3 cut(s)	159, 179, 1212
Sau3AI	GATC	7 cut(s)	243, 519, 787, 952, 1017, 1225, 1229
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	470, 1047
SduI	GDGCHC	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	949
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	1109
Sse9I	AATT	5 cut(s)	404, 696, 730, 831, 888
SsiI	CCGC	2 cut(s)	594, 761
StyD4I	CCNGG	2 cut(s)	468, 1045
StyI	CCWWGG	1 cut(s)	1013
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	8 cut(s)	54, 231, 287, 463, 518, 1020, 1119, 1228
TasI	AATT	5 cut(s)	404, 696, 730, 831, 888
TatI	WGTACW	2 cut(s)	3, 660
TfiI	GAWTC	2 cut(s)	212, 1159
Tru1I	TTAA	2 cut(s)	117, 852
Tru9I	TTAA	2 cut(s)	117, 852
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	3 cut(s)	158, 178, 1211
TspDTI	ATGAA	3 cut(s)	556, 912, 1088
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	2 cut(s)	730, 831
XceI	RCATGY	1 cut(s)	1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.