AT5G61790

Calnexin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24827063 .. 24829900
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61790.1

Sequence Viewer

Length: 1593 bp
ATGAGACAACGGCAACTATTTTCCGTGTTTTTGCTTCTCTTAGCTTTCGTTTCGTTCCAGAAGCTTTGCTACTGTGACGATCAAACGGTTCTGTATGAATCGTTCGATGAGCCTTTTGATGGCCGCTGGATCGTTTCGAAGAATAGTGATTACGAAGGTGTATGGAAGCATGCAAAGAGTGAAGGACATGAGGATTATGGACTTCTCGTGAGTGAGAAGGCTAGGAAGTATGGAATTGTGAAAGAGCTTGACGAGCCTCTAAACCTCAAGGAAGGAACTGTTGTTCTTCAGTACGAGGTTCGTTTCCAGGAAGGACTTGAGTGTGGTGGTGCTTACTTGAAGTACCTCCGTCCTCAGGAAGCTGGATGGACACCTCAGGGATTCGATAGTGAATCCCCTTACTCTATCATGTTTGGGCCTGACAAGTGTGGAGGTACGAACAAAGTGCATTTCATCTTGAAGCACAAGAATCCCAAGAGTGGCGAGTACGTTGAACACCATCTGAAGTTCCCTCCCTCTGTTCCTTATGACAAGCTTTCCCATGTCTACACCGCCATCTTGAAACCCGACAACGAGGTTAGAATTTTGGTTGATGGAGAGGAGAAGAAAAAGGCCAATTTACTCTCTGGTGAAGACTTTGAGCCTGCATTGATCCCTGCCAAGACCATCCCTGACCCTGAAGACAAGAAACCAGAGGATTGGGACGAAAGAGCCAAGATTCCTGATCCAAATGCCGTGAAGCCTGAGGACTGGGATGAGGATGCACCTATGGAGATTGAAGATGAGGAAGCTGAGAAACCCGAAGGATGGTTAGATGATGAGCCTGAGGAGGTCGACGACCCCGAAGCGACCAAGCCTGAAGATTGGGATGATGAGGAAGATGGTATGTGGGAGGCTCCTAAAATTGACAACCCCAAGTGTGAAGCAGCACCTGGTTGTGGTGAATGGAAGAGACCAATGAAGAGGAATCCTGCTTACAAGGGCAAATGGAGCTCACCTCTTATTGATAACCCGGCTTACAAGGGAATCTGGAAACCCAGAGATATCCCTAACCCTGACTACTTTGAGCTAGACAGACCCGATTACGAACCCATTGCAGCCATCGGTATTGAGATCTGGACAATGCAAGATGGTATCTTGTTTGACAACATCTTGATAGCGAAAGACGAGAAGGTCGCTGAGACTTACAGACAGACCACTTGGAAGCCCAAATTCGATGTTGAGAAAGAGAAACAAAAGGCAGAAGAGGAAGCTGCTGGCTCTGCAGATGGTCTCAAGAGCTACCAGAAGGTTGTATTCGACCTCTTGAACAAGGTTGCAGATTTATCTTTCCTAAGTGCCTACAAGTCTAAGATCACGGAACTGATTGAGAAAGCCGAGCAACAACCAAACTTAACCATTGGTGTCCTCGTCGCCATTGTGGTTGTATTCTTCTCGCTCTTCCTCAAGCTTATCTTTGGTGGCAAAAAGGCGGCGGCACCTGTGGAAAAGAAGAAACCAGAAGTAGCGGAGAGTTCAAAGAGTGGGGATGAGGCGGAGAAGAAGGAAGAAACCGCGGCACCACGCAAAAGGCAACCGAGACGTGATAATTAG

Protein Analysis

530

Amino Acids

60.49

Weight (kDa)

4.81

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 32 - 386 4.2e-146 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1172
AccB1I GGYRCC 2 cut(s) 1477, 1558
AccI GTMKAC 2 cut(s) 546, 834
AccII CGCG 1 cut(s) 1556
AciI CCGC 8 cut(s) 124, 552, 1472, 1475, 1508, 1535, 1554, 1556
AclWI GGATC 3 cut(s) 137, 646, 719
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 2 cut(s) 582, 1211
AcuI CTGAAG 4 cut(s) 272, 524, 699, 879
AfaI GTAC 4 cut(s) 293, 344, 436, 488
AfiI CCNNNNNNNGG 5 cut(s) 119, 355, 479, 807, 938
AgsI TTSAA 7 cut(s) 340, 460, 494, 562, 779, 1309, 1518
AjiI CACGTC 1 cut(s) 1583
AjnI CCWGG 2 cut(s) 306, 931
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
Alw21I GWGCWC 1 cut(s) 995
Alw26I GTCTC 4 cut(s) 946, 1175, 1277, 1573
AlwI GGATC 3 cut(s) 137, 646, 719
AlwNI CAGNNNCTG 1 cut(s) 932
AoxI GGCC 3 cut(s) 121, 416, 612
ApeKI GCWGC 3 cut(s) 926, 1097, 1253
ApoI RAATTY 2 cut(s) 582, 1211
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 1013
AsuHPI GGTGA 3 cut(s) 641, 953, 987
AsuII TTCGAA 1 cut(s) 137
AxyI CCTNAGG 4 cut(s) 354, 375, 744, 825
BanI GGYRCC 2 cut(s) 1477, 1558
BanII GRGCYC 1 cut(s) 995
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 639, 687
Bbv12I GWGCWC 1 cut(s) 995
BbvI GCAGC 3 cut(s) 938, 1109, 1240
BceAI ACGGC 2 cut(s) 26, 719
BcgI CGANNNNNNTGC 4 cut(s) 427, 461, 1076, 1110
BciT130I CCWGG 2 cut(s) 308, 933
BcnI CCSGG 1 cut(s) 1013
BcoDI GTCTC 4 cut(s) 946, 1175, 1277, 1573
BfaI CTAG 2 cut(s) 222, 1070
BfmI CTRYAG 1 cut(s) 1263
BglII AGATCT 1 cut(s) 1113
BisI GCNGC 7 cut(s) 124, 927, 1098, 1254, 1473, 1476, 1557
BlsI GCNGC 7 cut(s) 125, 928, 1099, 1255, 1474, 1477, 1558
Bme1390I CCNGG 3 cut(s) 308, 933, 1013
BmgBI CACGTC 1 cut(s) 1583
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 3 cut(s) 897, 1479, 1560
BmrFI CCNGG 3 cut(s) 308, 933, 1013
BmrI ACTGGG 1 cut(s) 760
BmsI GCATC 1 cut(s) 751
BmuI ACTGGG 1 cut(s) 760
BpiI GAAGAC 2 cut(s) 639, 687
BplI GAGNNNNNCTC 2 cut(s) 982, 1014
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 4 cut(s) 251, 338, 1259, 1430
BpuMI CCSGG 1 cut(s) 1013
BsaI GGTCTC 2 cut(s) 946, 1277
BsaJI CCNNGG 1 cut(s) 1554
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 355, 479, 807, 938
Bse1I ACTGG 1 cut(s) 755
Bse21I CCTNAGG 4 cut(s) 354, 375, 744, 825
Bse3DI GCAATG 1 cut(s) 1092
BseBI CCWGG 2 cut(s) 308, 933
BseDI CCNNGG 1 cut(s) 1554
BseGI GGATG 7 cut(s) 371, 666, 760, 766, 812, 874, 1534
BseLI CCNNNNNNNGG 5 cut(s) 119, 355, 479, 807, 938
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 6 cut(s) 368, 389, 735, 783, 816, 1170
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 2 cut(s) 614, 842
BseXI GCAGC 3 cut(s) 938, 1109, 1240
Bsh1236I CGCG 1 cut(s) 1556
BshFI GGCC 3 cut(s) 123, 418, 614
BshNI GGYRCC 2 cut(s) 1477, 1558
BsiHKAI GWGCWC 1 cut(s) 995
BsiSI CCGG 1 cut(s) 1013
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 5 cut(s) 119, 355, 479, 807, 938
BsmAI GTCTC 4 cut(s) 946, 1175, 1277, 1573
BsmBI CGTCTC 1 cut(s) 1573
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 3 cut(s) 123, 418, 614
Bso31I GGTCTC 2 cut(s) 946, 1277
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 995
Bsp143I GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
BspACI CCGC 8 cut(s) 124, 552, 1472, 1475, 1508, 1535, 1554, 1556
BspANI GGCC 3 cut(s) 123, 418, 614
BspCNI CTCAG 6 cut(s) 367, 388, 736, 784, 817, 1171
BspFNI CGCG 1 cut(s) 1556
BspLI GGNNCC 3 cut(s) 897, 1479, 1560
BspMAI CTGCAG 1 cut(s) 1267
BspPI GGATC 3 cut(s) 137, 646, 719
BspQI GCTCTTC 1 cut(s) 1445
BspT104I TTCGAA 1 cut(s) 137
BspT107I GGYRCC 2 cut(s) 1477, 1558
BspTNI GGTCTC 2 cut(s) 946, 1277
BsrDI GCAATG 1 cut(s) 1092
BsrI ACTGG 1 cut(s) 755
BssECI CCNNGG 1 cut(s) 1554
BssMI GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 308, 933
Bst4CI ACNGT 3 cut(s) 74, 88, 280
Bst6I CTCTTC 4 cut(s) 944, 956, 1239, 1445
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 171, 645, 1258
BstDEI CTNAG 9 cut(s) 40, 354, 375, 744, 792, 825, 1179, 1334, 1350
BstDSI CCRYGG 1 cut(s) 1554
BstF5I GGATG 7 cut(s) 371, 666, 760, 766, 812, 874, 1534
BstFNI CGCG 1 cut(s) 1556
BstKTI GATC 6 cut(s) 82, 132, 654, 727, 1116, 1356
BstMAI GTCTC 4 cut(s) 946, 1175, 1277, 1573
BstMBI GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
BstMWI GCNNNNNNNGC 3 cut(s) 253, 990, 1262
BstNI CCWGG 2 cut(s) 308, 933
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 306, 931, 1011
BstSFI CTRYAG 1 cut(s) 1263
BstUI CGCG 1 cut(s) 1556
BstV1I GCAGC 3 cut(s) 938, 1109, 1240
BstV2I GAAGAC 2 cut(s) 639, 687
BstX2I RGATCY 1 cut(s) 1113
BstXI CCANNNNNNTGG 1 cut(s) 699
BstYI RGATCY 1 cut(s) 1113
Bsu36I CCTNAGG 4 cut(s) 354, 375, 744, 825
BsuRI GGCC 3 cut(s) 123, 418, 614
BtgI CCRYGG 1 cut(s) 1554
BtrI CACGTC 1 cut(s) 1583
BtsCI GGATG 7 cut(s) 371, 666, 760, 766, 812, 874, 1534
Cac8I GCNNGC 3 cut(s) 171, 645, 1258
CaiI CAGNNNCTG 1 cut(s) 932
Cfr13I GGNCC 1 cut(s) 416
Cfr42I CCGCGG 1 cut(s) 1557
CsiI ACCWGGT 1 cut(s) 931
Csp6I GTAC 4 cut(s) 292, 343, 435, 487
CviAII CATG 4 cut(s) 170, 188, 409, 542
CviQI GTAC 4 cut(s) 292, 343, 435, 487
DdeI CTNAG 9 cut(s) 40, 354, 375, 744, 792, 825, 1179, 1334, 1350
DpnI GATC 6 cut(s) 81, 131, 653, 726, 1115, 1355
DpnII GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
DrdI GACNNNNNNGTC 1 cut(s) 1172
DseDI GACNNNNNNGTC 1 cut(s) 1172
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 4 cut(s) 944, 956, 1239, 1445
EarI CTCTTC 4 cut(s) 944, 956, 1239, 1445
EciI GGCGGA 1 cut(s) 1550
Ecl136II GAGCTC 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 995
Eco31I GGTCTC 2 cut(s) 946, 1277
Eco32I GATATC 1 cut(s) 1045
Eco53kI GAGCTC 1 cut(s) 993
Eco57I CTGAAG 4 cut(s) 272, 524, 699, 879
Eco81I CCTNAGG 4 cut(s) 354, 375, 744, 825
EcoICRI GAGCTC 1 cut(s) 993
EcoRII CCWGG 2 cut(s) 306, 931
EcoRV GATATC 1 cut(s) 1045
EcoT38I GRGCYC 1 cut(s) 995
Esp3I CGTCTC 1 cut(s) 1573
FaeI CATG 4 cut(s) 173, 191, 412, 545
FalI AAGNNNNNCTT 2 cut(s) 1439, 1471
FaqI GGGAC 1 cut(s) 716
FatI CATG 4 cut(s) 169, 187, 408, 541
FblI GTMKAC 2 cut(s) 546, 834
Fnu4HI GCNGC 7 cut(s) 124, 927, 1098, 1254, 1473, 1476, 1557
FokI GGATG 7 cut(s) 378, 653, 767, 773, 819, 881, 1541
FriOI GRGCYC 1 cut(s) 995
Fsp4HI GCNGC 7 cut(s) 124, 927, 1098, 1254, 1473, 1476, 1557
FspBI CTAG 2 cut(s) 222, 1070
GluI GCNGC 7 cut(s) 124, 927, 1098, 1254, 1473, 1476, 1557
HaeIII GGCC 3 cut(s) 123, 418, 614
HapII CCGG 1 cut(s) 1013
Hin1II CATG 4 cut(s) 173, 191, 412, 545
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HindIII AAGCTT 3 cut(s) 62, 533, 1448
HinfI GANTC 7 cut(s) 98, 381, 392, 469, 718, 967, 1026
HpaII CCGG 1 cut(s) 1013
HphI GGTGA 3 cut(s) 641, 953, 987
Hpy166II GTNNAC 2 cut(s) 547, 835
Hpy188I TCNGA 1 cut(s) 504
Hpy8I GTNNAC 2 cut(s) 547, 835
Hpy99I CGWCG 2 cut(s) 839, 1415
HpyAV CCTTC 9 cut(s) 149, 176, 211, 266, 305, 797, 1165, 1282, 1537
HpyCH4III ACNGT 3 cut(s) 74, 88, 280
HpyCH4IV ACGT 2 cut(s) 489, 1582
HpyCH4V TGCA 8 cut(s) 173, 448, 647, 764, 1097, 1126, 1265, 1319
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 990, 1262
HpyF3I CTNAG 9 cut(s) 40, 354, 375, 744, 792, 825, 1179, 1334, 1350
HpySE526I ACGT 2 cut(s) 489, 1582
Hsp92II CATG 4 cut(s) 173, 191, 412, 545
KspI CCGCGG 1 cut(s) 1557
Kzo9I GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
LguI GCTCTTC 1 cut(s) 1445
LmnI GCTCC 2 cut(s) 901, 990
Lsp1109I GCAGC 3 cut(s) 938, 1109, 1240
LweI GCATC 1 cut(s) 751
MabI ACCWGGT 1 cut(s) 931
MaeI CTAG 2 cut(s) 222, 1070
MaeII ACGT 2 cut(s) 489, 1582
MaeIII GTNAC 1 cut(s) 74
MalI GATC 6 cut(s) 81, 131, 653, 726, 1115, 1355
MboI GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
MflI RGATCY 1 cut(s) 1113
MhlI GDGCHC 1 cut(s) 995
MluCI AATT 6 cut(s) 234, 582, 616, 903, 1211, 1588
MseI TTAA 1 cut(s) 1394
MspA1I CMGCKG 2 cut(s) 126, 1556
MspI CCGG 1 cut(s) 1013
MspR9I CCNGG 3 cut(s) 308, 933, 1013
MvaI CCWGG 2 cut(s) 308, 933
MvnI CGCG 1 cut(s) 1556
MwoI GCNNNNNNNGC 3 cut(s) 253, 990, 1262
NciI CCSGG 1 cut(s) 1013
NdeII GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
NlaIII CATG 4 cut(s) 173, 191, 412, 545
NlaIV GGNNCC 3 cut(s) 897, 1479, 1560
NmeAIII GCCGAG 1 cut(s) 1402
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 137
PaeI GCATGC 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 1445
PcsI WCGNNNNNNNCGW 1 cut(s) 840
PfeI GAWTC 7 cut(s) 98, 381, 392, 469, 718, 967, 1026
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 7 cut(s) 125, 928, 1099, 1255, 1474, 1477, 1558
Psp124BI GAGCTC 1 cut(s) 995
Psp6I CCWGG 2 cut(s) 306, 931
PspGI CCWGG 2 cut(s) 306, 931
PspN4I GGNNCC 3 cut(s) 897, 1479, 1560
PspPI GGNCC 1 cut(s) 416
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstI CTGCAG 1 cut(s) 1267
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 1113
RsaI GTAC 4 cut(s) 293, 344, 436, 488
RsaNI GTAC 4 cut(s) 292, 343, 435, 487
SacI GAGCTC 1 cut(s) 995
SacII CCGCGG 1 cut(s) 1557
SalI GTCGAC 1 cut(s) 833
SapI GCTCTTC 1 cut(s) 1445
SaqAI TTAA 1 cut(s) 1394
SatI GCNGC 7 cut(s) 124, 927, 1098, 1254, 1473, 1476, 1557
Sau3AI GATC 6 cut(s) 79, 129, 651, 724, 1113, 1353
Sau96I GGNCC 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 308, 933, 1013
SduI GDGCHC 1 cut(s) 995
SexAI ACCWGGT 1 cut(s) 931
SfaNI GCATC 1 cut(s) 751
SfcI CTRYAG 1 cut(s) 1263
Sfr303I CCGCGG 1 cut(s) 1557
SfuI TTCGAA 1 cut(s) 137
SgrBI CCGCGG 1 cut(s) 1557
SmlI CTYRAG 4 cut(s) 266, 317, 1274, 1445
SmoI CTYRAG 4 cut(s) 266, 317, 1274, 1445
SphI GCATGC 1 cut(s) 173
Sse9I AATT 6 cut(s) 234, 582, 616, 903, 1211, 1588
SsiI CCGC 8 cut(s) 124, 552, 1472, 1475, 1508, 1535, 1554, 1556
SspMI CTAG 2 cut(s) 222, 1070
SstI GAGCTC 1 cut(s) 995
StyD4I CCNGG 3 cut(s) 306, 931, 1011
TaaI ACNGT 3 cut(s) 74, 88, 280
TaiI ACGT 2 cut(s) 492, 1585
TaqI TCGA 6 cut(s) 105, 137, 384, 834, 1215, 1299
TasI AATT 6 cut(s) 234, 582, 616, 903, 1211, 1588
TauI GCSGC 4 cut(s) 126, 1475, 1478, 1559
TfiI GAWTC 7 cut(s) 98, 381, 392, 469, 718, 967, 1026
Tru1I TTAA 1 cut(s) 1394
Tru9I TTAA 1 cut(s) 1394
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 3 cut(s) 926, 1097, 1253
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 111, 442, 974
TspGWI ACGGA 3 cut(s) 13, 338, 1373
XapI RAATTY 2 cut(s) 582, 1211
XceI RCATGY 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 546, 834
XspI CTAG 2 cut(s) 222, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.