Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003158

Physical Location & Seq

Genomic Coordinates Reverse (-)

25087712 .. 25089878

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAAGGGAGGCCTAAGATCACTGAGCTTCGGCCAGTACTACTGTTTCTCATCGCAGCTTCCTTTGCCTTTCAGATCCACGCTTCTTCTCAAGACCATGACCTCAATGCGATCTTTCACGAGCCCTTCAACGAGTCATTCGAAGGCCGCTGGATCGCTTCTGCCAAAGATGAGTACAAAGGTGTGTGGAAGCTATCAAAGAGTGAGGGGCATGATGATTACGGGCTTCTGGTGAGTGAGAAAGCGAGGAAGTATGCTCTAGTGAAAGAGCTAGATGAGGCTGTGAGCCTTAAGGGTAGAACTATTGTGTTGCAGTTCGAGGTTCGGCTACAGAAGAGCCTTGAATGTGGTGGTGCATACTTGAAGTATCTCCGGCCACAGGAGGCTGGGTGGAGACCAGAAGGGTTTGATAACGATTCTCCCTATTCCATTATGTTTGGACCTGACAAATGTAGCACCACAAATAGGGTTCATTTCATTTTTAAGCACAAGAACCCTAGGAGTGGAGAGTATGTTGAGCACCATCTTAAGAACACTCCAACCGTGCCTGATGACAAACTCACCCATGTTTACACTGCAATAGTGAAAGCAGATAGTGAGGTTAGAATTTTGGTGGACGGGGAGGAGAAGAAGAAAGCAAGGTTCCTTTCTGCTCAAGATTTTGAACCTACATTGGTTCCAAGCAAGACTATTCCTGATCCAAATGATAAGAAGCCGGCGGATTGGGATGATCGCCCAACGATTCCTGATCCAAATGCTGTAAAGCCTGATTATTGGGATGAAAATGCTCCAATAGAGATTGAAGATGAGGAAGCTGTGAAACCAAGGGTGGATGGCATTTTGTTTGACAACATTCTAATAGCCGATAGTGAGAAGGTTGCCAAATCTTATAGGAGAATTACATGGAAGCCAAAGTTCAAGGTTGAGAAAGAGAAGCAAAGGGCTGAGGAAGCAGCTGCAGGTCTTTCATTTGGACTTTACAGCATCCATAAAATAATATTTGACCTTCTCTACAAGATAGCAGGTGTTTCATTCTTGGATGCATACAACCCCAAGATCATTGATCTTATTGACAAAGCAGAAAAACAGCCCAATATCACAACTGGTGTCATTGTATCCGTCCTGGTCATTCTTTTGACAGTTCTCTTCAAAATCCTTTTTGGTGGCAAAAAACCTACGGTTGCTGCTCATGAACCTAACAGGGGAGCAGCCGCAGAGACTGCCACCAATCCGGGAACCAGAAGCAGCGAGGTGAAGGCAGATGAGAGTGAGAAGGAAGATGCAGCTCTCCGCAGGAGATCTACCAGAAGGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko04918 ko05166 map04141 map04145 map04612 map04918 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

440

Amino Acids

49.59

Weight (kDa)

6.31

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	39 - 276	1.4e-76	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07340 AT5G07340 AT5G61790
fragaria_vesca	FvH4_4g22170 FvH4_5g09940
malus_domestica	MD00G1076300.v1.1 MD08G1097600.v1.1 MD08G1097700.v1.1 MD13G1134200.v1.1 MD14G1144700.v1.1 MD16G1144800.v1.1
prunus_persica	Prupe.1G211400_v2.0.a1 Prupe.5G139100_v2.0.a1 Prupe.5G139100_v2.0.a1
pyrus_communis	pycom06g11940 pycom13g11700 pycom14g12020 pycom16g11430
rosa_chinensis	RchiOBHm_Chr4g0428401 RchiOBHm_Chr7g0188351
rosa_laevigata	RLG00000004706 RLG00000007154
rosa_multiflora	Rmu_sc0004698.1_g000004 Rmu_sc0008750.1_g000004
rosa_roxburghii	Rroxscaffold_3G00266480 Rroxscaffold_5G00370070
rosa_rugosa	Rorug04G0225200 Rorug06G0490000 Rorug06G0490100
rosa_samantha	Rh4AG282400 Rh4BG288000 Rh4CG303600 Rh4DG285100 Rh7BG096200 Rh7CG096500
rosa_wichuraiana	Rw4G024510 Rw7G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1013
Acc36I	ACCTGC	2 cut(s)	950, 1013
AciI	CCGC	4 cut(s)	148, 719, 1212, 1291
AclWI	GGATC	4 cut(s)	70, 161, 692, 743
AcoI	YGGCCR	2 cut(s)	32, 374
AcsI	RAATTY	1 cut(s)	606
AfaI	GTAC	2 cut(s)	39, 176
AfiI	CCNNNNNNNGG	4 cut(s)	379, 465, 503, 1202
AflII	CTTAAG	2 cut(s)	290, 527
AgsI	TTSAA	7 cut(s)	130, 344, 364, 665, 803, 919, 1150
AjnI	CCWGG	1 cut(s)	1122
AluBI	AGCT	7 cut(s)	28, 59, 193, 271, 815, 956, 1286
AluI	AGCT	7 cut(s)	28, 59, 193, 271, 815, 956, 1286
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	388, 1211
AlwI	GGATC	4 cut(s)	70, 161, 692, 743
AlwNI	CAGNNNCTG	1 cut(s)	1220
AoxI	GGCC	4 cut(s)	11, 32, 145, 374
ApeKI	GCWGC	7 cut(s)	56, 953, 956, 1184, 1208, 1245, 1283
ApoI	RAATTY	1 cut(s)	606
AspA2I	CCTAGG	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	1233
AsuHPI	GGTGA	3 cut(s)	244, 553, 1264
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	440
AvrII	CCTAGG	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	945
BbvI	GCAGC	7 cut(s)	68, 943, 965, 1171, 1220, 1257, 1295
BccI	CCATC	2 cut(s)	531, 827
BciT130I	CCWGG	1 cut(s)	1124
BciVI	GTATCC	1 cut(s)	1126
BcnI	CCSGG	1 cut(s)	1233
BcoDI	GTCTC	2 cut(s)	388, 1211
BfaI	CTAG	3 cut(s)	260, 272, 498
BfmI	CTRYAG	2 cut(s)	329, 957
BfrI	CTTAAG	2 cut(s)	290, 527
BfuAI	ACCTGC	2 cut(s)	950, 1013
BfuI	GTATCC	1 cut(s)	1126
BglII	AGATCT	1 cut(s)	1298
BisI	GCNGC	9 cut(s)	57, 148, 954, 957, 1185, 1209, 1212, 1246, 1284
BlnI	CCTAGG	1 cut(s)	497
BlsI	GCNGC	9 cut(s)	58, 149, 955, 958, 1186, 1210, 1213, 1247, 1285
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	1124, 1233
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	3 cut(s)	644, 678, 1237
BmrFI	CCNGG	2 cut(s)	1124, 1233
BmsI	GCATC	3 cut(s)	993, 1030, 1270
Bpu10I	CCTNAGC	1 cut(s)	945
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	75, 639
BpuMI	CCSGG	1 cut(s)	1233
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	497, 824
BsaXI	ACNNNNNCTCC	4 cut(s)	374, 404, 498, 528
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 465, 503, 1202
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	2 cut(s)	35, 1108
BseBI	CCWGG	1 cut(s)	1124
BseDI	CCNNGG	2 cut(s)	497, 824
BseGI	GGATG	5 cut(s)	733, 784, 838, 984, 1045
BseLI	CCNNNNNNNGG	4 cut(s)	379, 465, 503, 1202
BseMII	CTCAG	2 cut(s)	15, 936
BseNI	ACTGG	2 cut(s)	35, 1108
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	7 cut(s)	68, 943, 965, 1171, 1220, 1257, 1295
BseYI	CCCAGC	1 cut(s)	386
BshFI	GGCC	4 cut(s)	13, 34, 147, 376
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	3 cut(s)	373, 716, 1232
BslI	CCNNNNNNNGG	4 cut(s)	379, 465, 503, 1202
BsmAI	GTCTC	2 cut(s)	388, 1211
BsnI	GGCC	4 cut(s)	13, 34, 147, 376
Bso31I	GGTCTC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	126, 522
BspACI	CCGC	4 cut(s)	148, 719, 1212, 1291
BspANI	GGCC	4 cut(s)	13, 34, 147, 376
BspCNI	CTCAG	2 cut(s)	16, 937
BspHI	TCATGA	1 cut(s)	1189
BspLI	GGNNCC	3 cut(s)	644, 678, 1237
BspMAI	CTGCAG	1 cut(s)	961
BspMI	ACCTGC	2 cut(s)	950, 1013
BspPI	GGATC	4 cut(s)	70, 161, 692, 743
BspQI	GCTCTTC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	141
BspTI	CTTAAG	2 cut(s)	290, 527
BspTNI	GGTCTC	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	35, 1108
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	2 cut(s)	497, 824
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	497, 824
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	1124
Bst4CI	ACNGT	4 cut(s)	45, 544, 1141, 1180
Bst6I	CTCTTC	2 cut(s)	329, 1151
BstAFI	CTTAAG	2 cut(s)	290, 527
BstAPI	GCANNNNNTGC	1 cut(s)	1220
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	3 cut(s)	15, 24, 945
BstF5I	GGATG	5 cut(s)	733, 784, 838, 984, 1045
BstMAI	GTCTC	2 cut(s)	388, 1211
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 950, 1220
BstNI	CCWGG	1 cut(s)	1124
BstSCI	CCNGG	2 cut(s)	1122, 1231
BstSFI	CTRYAG	2 cut(s)	329, 957
BstV1I	GCAGC	7 cut(s)	68, 943, 965, 1171, 1220, 1257, 1295
BstX2I	RGATCY	2 cut(s)	75, 1298
BstYI	RGATCY	2 cut(s)	75, 1298
BsuI	GTATCC	1 cut(s)	1126
BsuRI	GGCC	4 cut(s)	13, 34, 147, 376
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	5 cut(s)	733, 784, 838, 984, 1045
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	21, 573
BveI	ACCTGC	2 cut(s)	950, 1013
Cac8I	GCNNGC	1 cut(s)	717
CaiI	CAGNNNCTG	1 cut(s)	1220
CciI	TCATGA	1 cut(s)	1189
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	38, 175
CviAII	CATG	5 cut(s)	98, 212, 566, 903, 1190
CviQI	GTAC	2 cut(s)	38, 175
DdeI	CTNAG	3 cut(s)	15, 24, 945
EaeI	YGGCCR	2 cut(s)	32, 374
Eam1104I	CTCTTC	2 cut(s)	329, 1151
EarI	CTCTTC	2 cut(s)	329, 1151
EciI	GGCGGA	1 cut(s)	734
Eco130I	CCWWGG	2 cut(s)	497, 824
Eco147I	AGGCCT	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	1122
EcoT14I	CCWWGG	2 cut(s)	497, 824
EcoT22I	ATGCAT	1 cut(s)	1045
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	497, 824
FaeI	CATG	5 cut(s)	101, 215, 569, 906, 1193
FalI	AAGNNNNNCTT	1 cut(s)	1300
FatI	CATG	5 cut(s)	97, 211, 565, 902, 1189
Fnu4HI	GCNGC	9 cut(s)	57, 148, 954, 957, 1185, 1209, 1212, 1246, 1284
FokI	GGATG	5 cut(s)	740, 791, 845, 971, 1052
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	9 cut(s)	57, 148, 954, 957, 1185, 1209, 1212, 1246, 1284
FspBI	CTAG	3 cut(s)	260, 272, 498
GluI	GCNGC	9 cut(s)	57, 148, 954, 957, 1185, 1209, 1212, 1246, 1284
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	4 cut(s)	13, 34, 147, 376
HapII	CCGG	3 cut(s)	373, 716, 1232
Hin1II	CATG	5 cut(s)	101, 215, 569, 906, 1193
HinfI	GANTC	3 cut(s)	134, 416, 742
HpaII	CCGG	3 cut(s)	373, 716, 1232
HphI	GGTGA	3 cut(s)	244, 553, 1264
Hpy166II	GTNNAC	2 cut(s)	571, 616
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	6 cut(s)	92, 119, 656, 695, 746, 1190
Hpy8I	GTNNAC	2 cut(s)	571, 616
HpyAV	CCTTC	8 cut(s)	136, 137, 395, 868, 1016, 1249, 1267, 1302
HpyCH4III	ACNGT	4 cut(s)	45, 544, 1141, 1180
HpyCH4V	TGCA	6 cut(s)	313, 356, 578, 959, 1043, 1283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 950, 1220
HpyF3I	CTNAG	3 cut(s)	15, 24, 945
Hsp92II	CATG	5 cut(s)	101, 215, 569, 906, 1193
KroI	GCCGGC	1 cut(s)	715
KroNI	GCCGGC	1 cut(s)	717
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	793, 1205
Lsp1109I	GCAGC	7 cut(s)	68, 943, 965, 1171, 1220, 1257, 1295
LweI	GCATC	3 cut(s)	993, 1030, 1270
MaeI	CTAG	3 cut(s)	260, 272, 498
MboII	GAAGA	7 cut(s)	78, 346, 640, 643, 815, 1138, 1289
MflI	RGATCY	2 cut(s)	75, 1298
MhlI	GDGCHC	2 cut(s)	126, 522
MluCI	AATT	2 cut(s)	606, 897
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	563
Mph1103I	ATGCAT	1 cut(s)	1045
MroNI	GCCGGC	1 cut(s)	715
MseI	TTAA	3 cut(s)	291, 483, 528
MspA1I	CMGCKG	2 cut(s)	150, 956
MspCI	CTTAAG	2 cut(s)	290, 527
MspI	CCGG	3 cut(s)	373, 716, 1232
MspR9I	CCNGG	2 cut(s)	1124, 1233
MvaI	CCWGG	1 cut(s)	1124
MwoI	GCNNNNNNNGC	3 cut(s)	65, 950, 1220
NaeI	GCCGGC	1 cut(s)	717
NciI	CCSGG	1 cut(s)	1233
NgoMIV	GCCGGC	1 cut(s)	715
NlaIII	CATG	5 cut(s)	101, 215, 569, 906, 1193
NlaIV	GGNNCC	3 cut(s)	644, 678, 1237
NsiI	ATGCAT	1 cut(s)	1045
NspV	TTCGAA	1 cut(s)	141
PagI	TCATGA	1 cut(s)	1189
PaqCI	CACCTGC	1 cut(s)	1013
PceI	AGGCCT	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	416, 742
PfoI	TCCNGGA	1 cut(s)	1231
PkrI	GCNGC	9 cut(s)	58, 149, 955, 958, 1186, 1210, 1213, 1247, 1285
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	1122
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	1122
PspN4I	GGNNCC	3 cut(s)	644, 678, 1237
PspPI	GGNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	1220
PsuI	RGATCY	2 cut(s)	75, 1298
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	2 cut(s)	39, 176
RsaNI	GTAC	2 cut(s)	38, 175
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	291, 483, 528
SatI	GCNGC	9 cut(s)	57, 148, 954, 957, 1185, 1209, 1212, 1246, 1284
Sau96I	GGNCC	1 cut(s)	440
ScaI	AGTACT	1 cut(s)	39
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	1124, 1233
SduI	GDGCHC	2 cut(s)	126, 522
SfaNI	GCATC	3 cut(s)	993, 1030, 1270
SfcI	CTRYAG	2 cut(s)	329, 957
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	4 cut(s)	90, 290, 527, 654
SmoI	CTYRAG	4 cut(s)	90, 290, 527, 654
Sse9I	AATT	2 cut(s)	606, 897
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	4 cut(s)	148, 719, 1212, 1291
SspI	AATATT	1 cut(s)	999
SspMI	CTAG	3 cut(s)	260, 272, 498
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	1122, 1231
StyI	CCWWGG	2 cut(s)	497, 824
TaaI	ACNGT	4 cut(s)	45, 544, 1141, 1180
TaqI	TCGA	2 cut(s)	141, 318
TasI	AATT	2 cut(s)	606, 897
TatI	WGTACW	2 cut(s)	37, 174
TauI	GCSGC	2 cut(s)	150, 1214
TfiI	GAWTC	2 cut(s)	416, 742
Tru1I	TTAA	3 cut(s)	291, 483, 528
Tru9I	TTAA	3 cut(s)	291, 483, 528
TscAI	CASTG	2 cut(s)	28, 580
TseI	GCWGC	7 cut(s)	56, 953, 956, 1184, 1208, 1245, 1283
TspDTI	ATGAA	6 cut(s)	461, 466, 795, 957, 1020, 1206
TspGWI	ACGGA	1 cut(s)	1108
TspRI	CASTG	2 cut(s)	28, 580
Vha464I	CTTAAG	2 cut(s)	290, 527
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	606
XmaJI	CCTAGG	1 cut(s)	497
XspI	CTAG	3 cut(s)	260, 272, 498
ZrmI	AGTACT	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.