MD00G1076300.v1.1

Calnexin homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
15349536 .. 15352832
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1076300.v1.1.491

Sequence Viewer

Length: 1737 bp
ATGTACAAGTCTCAGAACTCTTTCCCAGAGAGGGCGGACTTGTCTAAGAACTTCGACGAGAGAGAGAGAGATACAGAGGAGAAAGAGAGTTTTAGAGAGAGAAAGATGGTTAGGGTTCGCGGTGGTGTTCTTCCGGTGCTGCTGATGCTGGTAGCTTGCTTTGCATTTCAGCAGCTATCTGCTTCCGACGATACGGTATTTTACGATTCGTTTGATGACACATTCGAAGGCCGATGGATCGTTTCTAGCAAAGAAGAGTACCAAGGTGTGTGGAGTCACTCAAAGAGCGAGGGACATGAGGATTACGGACTTCTTGTGAGTGAGCCTGCCAAGAAGTACGCAATAGTGAAGGAGCTTGAGAAGCCTGAGAGTCTGAATGATGGAACTATTGTCCTCCAATTTGAGACTCGTCTCCAGAACGGGCTTGAATGTGGTGGTGCCTATCTGAAATACCTTCGACCTCAGGAGGCTGGTTGGGAACCTAAGATATTTGACAATGAGTCTCCTTATTCGATCATGTTTGGACCTGACAAATGTGGGCTCACAAACAAGGTTCACTTCATTTTCAAGCACAAGAACCCCAAGAGCGGAGAGTACGTTGAACACCATTTGACGACTCCACCCTCTGTTCCAGTTGACAAACTTACTCATGTGTACACTGCCATTCTTAAACCCAATAACGAGTTGGTAATTCTGGTTGATGGGGAAGAGAAGAAGAAGGCGAATTTCCTATCGGCTGATGATTTCATGCCACCTCTTATTCCTACCAAGACAATCCCTGATCCAGAGGATAAGAAGCCTGAGGATTGGGATGAGAGAGCCAAGATTCAAGACCCAAATGCTGTAAAGCCAGAGGACTGGGATGAGGATGCCCCAATGGAAATTGTAGATGAAGAAGCAGAAAAACCTGAAGGATGGTTGGATGATGAGCCTGAGGAGATAGATGATCCTGATTCCACGAAACCAGAAGACTGGGATGATGAGGAGGATGGTGAATGGGAAGCCCCAAGGATCGAGAACCCAAAGTGTGTGACCGCCCCTGGTTGTGGTGAATGGAAGAAGCCAATGAAGAGGAACCCAGCTTACAAGGGAAAATGGCATGCCCCACTTATCGATAACCCCAGTTACAAGGGTGTCTGGAAGCCTCAGGAGATTCCAAACCCCAGCTACTTTGAAGCTGACAAACCCAACTTTGAGCCTATCGCAGCTGTCGGCATTGAGATCTGGACGATGCAAGATGGTATATTGTTTGACAACATTTTGATAGCGAAGGACGAGAAAGTTGCACAAACATACAGAGAGACCGGTTGGAAACCAAAATTTGAAGTTGAGAAAGAGAAGTCGAAGGAAGAGGAAGATGTTCAAGGCACAGATGGGTTCCTTGCCACCGTCCAGAAGAAAATATTTGACCTCCTATACACAGTCGCAGATCTTCCCTTCTTGAGTTCCCACAAGCCTAAGATCGTTGATCTCATCGAGAAGGCAGAGGAACAACCAAATCTCACCGTTGGCATCCTTGTCGCGATTGTGGTGATCATCTTCACTGTCTTTGTCAAGCTACTCTTCGGCGGAAAGAAACCTGCAAGAGTTGAGAAGAAAACCACCGGAGCCACTGCCGCTTCAAGCAGTGCAGCCGCAAAGGAAGACGAAAAGGAGAAGGAAGGTACTTCATCTGAGAGTGAGAAGGAAGGAGCCGCTGCTCCTCGCAGAAGGTCGACGACCAGGCGTGAAAACTGA

Protein Analysis

579

Amino Acids

65.68

Weight (kDa)

4.82

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 67 - 422 3.1e-143 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1588
AccB1I GGYRCC 1 cut(s) 437
AccBSI CCGCTC 1 cut(s) 588
AccI GTMKAC 1 cut(s) 1715
AccII CGCG 2 cut(s) 120, 1523
AciI CCGC 8 cut(s) 35, 120, 588, 1035, 1569, 1617, 1635, 1695
AclWI GGATC 4 cut(s) 245, 776, 941, 1019
AcsI RAATTY 2 cut(s) 724, 1319
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 6 cut(s) 5, 260, 338, 596, 656, 1666
AfiI CCNNNNNNNGG 3 cut(s) 31, 587, 1046
AgeI ACCGGT 1 cut(s) 1304
AgsI TTSAA 8 cut(s) 428, 568, 602, 830, 1175, 1325, 1364, 1623
AhdI GACNNNNNGTC 1 cut(s) 499
AjnI CCWGG 2 cut(s) 1039, 1721
AluBI AGCT 8 cut(s) 155, 175, 355, 1082, 1167, 1178, 1208, 1558
AluI AGCT 8 cut(s) 155, 175, 355, 1082, 1167, 1178, 1208, 1558
Alw26I GTCTC 5 cut(s) 15, 398, 416, 507, 1295
AlwI GGATC 4 cut(s) 245, 776, 941, 1019
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 5 cut(s) 139, 172, 1205, 1631, 1697
ApoI RAATTY 2 cut(s) 724, 1319
AsiGI ACCGGT 1 cut(s) 1304
Asp700I GAANNNNTTC 2 cut(s) 20, 1359
AspS9I GGNCC 1 cut(s) 524
AsuHPI GGTGA 4 cut(s) 1004, 1061, 1495, 1543
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 1 cut(s) 524
AxyI CCTNAGG 4 cut(s) 462, 801, 933, 1146
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 2 cut(s) 975, 1650
BbvI GCAGC 5 cut(s) 126, 184, 1217, 1643, 1684
BccI CCATC 8 cut(s) 100, 228, 374, 695, 909, 983, 1232, 1367
BcgI CGANNNNNNTGC 4 cut(s) 1265, 1299, 1501, 1535
BciT130I CCWGG 2 cut(s) 1041, 1723
BclI TGATCA 1 cut(s) 1533
BcoDI GTCTC 5 cut(s) 15, 398, 416, 507, 1295
BfaI CTAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 1588
BglII AGATCT 2 cut(s) 1221, 1429
BisI GCNGC 8 cut(s) 140, 173, 1206, 1617, 1632, 1635, 1695, 1698
BlsI GCNGC 8 cut(s) 141, 174, 1207, 1618, 1633, 1636, 1696, 1699
Bme1390I CCNGG 2 cut(s) 1041, 1723
Bme18I GGWCC 1 cut(s) 524
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 6 cut(s) 439, 480, 1076, 1379, 1609, 1693
BmrFI CCNGG 2 cut(s) 1041, 1723
BmrI ACTGGG 3 cut(s) 868, 982, 1116
BmsI GCATC 4 cut(s) 135, 859, 1221, 1521
BmuI ACTGGG 3 cut(s) 868, 982, 1116
BpiI GAAGAC 2 cut(s) 975, 1650
BpmI CTGGAG 1 cut(s) 398
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 377, 1462
Bsa29I ATCGAT 1 cut(s) 1113
BsaI GGTCTC 1 cut(s) 1295
BsaJI CCNNGG 3 cut(s) 262, 1007, 1039
BsaWI WCCGGW 3 cut(s) 133, 1304, 1604
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 587, 1046
Bse118I RCCGGY 1 cut(s) 1304
Bse1I ACTGG 4 cut(s) 632, 863, 977, 1122
Bse21I CCTNAGG 4 cut(s) 462, 801, 933, 1146
BseBI CCWGG 2 cut(s) 1041, 1723
BseCI ATCGAT 1 cut(s) 1113
BseDI CCNNGG 3 cut(s) 262, 1007, 1039
BseGI GGATG 8 cut(s) 817, 868, 874, 920, 928, 982, 994, 1512
BseLI CCNNNNNNNGG 3 cut(s) 31, 587, 1046
BseMII CTCAG 7 cut(s) 26, 357, 476, 792, 924, 1160, 1665
BseNI ACTGG 4 cut(s) 632, 863, 977, 1122
BseRI GAGGAG 4 cut(s) 92, 950, 998, 1692
BseXI GCAGC 5 cut(s) 126, 184, 1217, 1643, 1684
BseYI CCCAGC 2 cut(s) 1078, 1163
BsgI GTGCAG 1 cut(s) 1650
Bsh1236I CGCG 2 cut(s) 120, 1523
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 437
BshTI ACCGGT 1 cut(s) 1304
BshVI ATCGAT 1 cut(s) 1113
BsiSI CCGG 3 cut(s) 134, 1305, 1605
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 3 cut(s) 31, 587, 1046
BsmAI GTCTC 5 cut(s) 15, 398, 416, 507, 1295
BsmBI CGTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 1295
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 543
Bsp1407I TGTACA 2 cut(s) 3, 654
Bsp68I TCGCGA 1 cut(s) 1523
BspACI CCGC 8 cut(s) 35, 120, 588, 1035, 1569, 1617, 1635, 1695
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 7 cut(s) 25, 358, 475, 793, 925, 1159, 1666
BspDI ATCGAT 1 cut(s) 1113
BspFNI CGCG 2 cut(s) 120, 1523
BspLI GGNNCC 6 cut(s) 439, 480, 1076, 1379, 1609, 1693
BspMI ACCTGC 1 cut(s) 1588
BspPI GGATC 4 cut(s) 245, 776, 941, 1019
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 1295
BsrBI CCGCTC 1 cut(s) 588
BsrFI RCCGGY 1 cut(s) 1304
BsrGI TGTACA 2 cut(s) 3, 654
BsrI ACTGG 4 cut(s) 632, 863, 977, 1122
BssAI RCCGGY 1 cut(s) 1304
BssECI CCNNGG 3 cut(s) 262, 1007, 1039
BssT1I CCWWGG 2 cut(s) 262, 1007
Bst2UI CCWGG 2 cut(s) 1041, 1723
Bst4CI ACNGT 5 cut(s) 196, 1390, 1423, 1507, 1546
Bst6I CTCTTC 5 cut(s) 249, 702, 1064, 1344, 1568
BstAUI TGTACA 2 cut(s) 3, 654
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 157, 327, 1101
BstF5I GGATG 8 cut(s) 817, 868, 874, 920, 928, 982, 994, 1512
BstFNI CGCG 2 cut(s) 120, 1523
BstMAI GTCTC 5 cut(s) 15, 398, 416, 507, 1295
BstMWI GCNNNNNNNGC 4 cut(s) 145, 161, 361, 1616
BstNI CCWGG 2 cut(s) 1041, 1723
BstNSI RCATGY 1 cut(s) 1103
BstSCI CCNGG 2 cut(s) 1039, 1721
BstUI CGCG 2 cut(s) 120, 1523
BstV1I GCAGC 5 cut(s) 126, 184, 1217, 1643, 1684
BstV2I GAAGAC 2 cut(s) 975, 1650
BstX2I RGATCY 2 cut(s) 1221, 1429
BstXI CCANNNNNNTGG 2 cut(s) 858, 972
BstYI RGATCY 2 cut(s) 1221, 1429
Bsu15I ATCGAT 1 cut(s) 1113
Bsu36I CCTNAGG 4 cut(s) 462, 801, 933, 1146
BsuRI GGCC 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 1113
BtsCI GGATG 8 cut(s) 817, 868, 874, 920, 928, 982, 994, 1512
BtsI GCAGTG 3 cut(s) 657, 1611, 1633
BtsIMutI CAGTG 4 cut(s) 657, 1542, 1611, 1633
BtuMI TCGCGA 1 cut(s) 1523
BveI ACCTGC 1 cut(s) 1588
Cac8I GCNNGC 3 cut(s) 157, 327, 1101
Cfr10I RCCGGY 1 cut(s) 1304
Cfr13I GGNCC 1 cut(s) 524
ClaI ATCGAT 1 cut(s) 1113
Csp6I GTAC 6 cut(s) 4, 259, 337, 595, 655, 1665
CspAI ACCGGT 1 cut(s) 1304
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviAII CATG 5 cut(s) 296, 517, 650, 748, 1100
CviQI GTAC 6 cut(s) 4, 259, 337, 595, 655, 1665
DriI GACNNNNNGTC 1 cut(s) 499
Eam1104I CTCTTC 5 cut(s) 249, 702, 1064, 1344, 1568
Eam1105I GACNNNNNGTC 1 cut(s) 499
EarI CTCTTC 5 cut(s) 249, 702, 1064, 1344, 1568
EciI GGCGGA 2 cut(s) 50, 1584
Eco130I CCWWGG 2 cut(s) 262, 1007
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 1295
Eco47I GGWCC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 930
Eco81I CCTNAGG 4 cut(s) 462, 801, 933, 1146
EcoRII CCWGG 2 cut(s) 1039, 1721
EcoT14I CCWWGG 2 cut(s) 262, 1007
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 2 cut(s) 262, 1007
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 5 cut(s) 299, 520, 653, 751, 1103
FaiI YATR 8 cut(s) 297, 518, 651, 749, 1101, 1244, 1294, 1417
FalI AAGNNNNNCTT 4 cut(s) 542, 574, 1547, 1579
FaqI GGGAC 1 cut(s) 306
FatI CATG 5 cut(s) 295, 516, 649, 747, 1099
FbaI TGATCA 1 cut(s) 1533
FblI GTMKAC 1 cut(s) 1715
Fnu4HI GCNGC 8 cut(s) 140, 173, 1206, 1617, 1632, 1635, 1695, 1698
FokI GGATG 8 cut(s) 824, 875, 881, 927, 935, 989, 1001, 1499
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 8 cut(s) 140, 173, 1206, 1617, 1632, 1635, 1695, 1698
FspBI CTAG 1 cut(s) 246
GluI GCNGC 8 cut(s) 140, 173, 1206, 1617, 1632, 1635, 1695, 1698
GsaI CCCAGC 2 cut(s) 1082, 1167
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 231
HapII CCGG 3 cut(s) 134, 1305, 1605
Hin1II CATG 5 cut(s) 299, 520, 653, 751, 1103
HincII GTYRAC 2 cut(s) 637, 1716
HindII GTYRAC 2 cut(s) 637, 1716
HinfI GANTC 9 cut(s) 206, 274, 370, 406, 500, 616, 826, 953, 1153
HpaII CCGG 3 cut(s) 134, 1305, 1605
HphI GGTGA 4 cut(s) 1004, 1061, 1495, 1543
Hpy166II GTNNAC 5 cut(s) 556, 637, 655, 657, 1716
Hpy188I TCNGA 5 cut(s) 15, 187, 375, 447, 1675
Hpy8I GTNNAC 5 cut(s) 556, 637, 655, 657, 1716
Hpy99I CGWCG 3 cut(s) 59, 191, 1720
HpyCH4III ACNGT 5 cut(s) 196, 1390, 1423, 1507, 1546
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 5 cut(s) 164, 1234, 1286, 1583, 1631
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 161, 361, 1616
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 5 cut(s) 299, 520, 653, 751, 1103
Ksp22I TGATCA 1 cut(s) 1533
LmnI GCTCC 4 cut(s) 352, 1607, 1691, 1705
Lsp1109I GCAGC 5 cut(s) 126, 184, 1217, 1643, 1684
LweI GCATC 4 cut(s) 135, 859, 1221, 1521
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 3 cut(s) 275, 1030, 1124
MbiI CCGCTC 1 cut(s) 588
MflI RGATCY 2 cut(s) 1221, 1429
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 5 cut(s) 398, 690, 724, 882, 1319
MlyI GAGTC 5 cut(s) 283, 379, 400, 509, 610
MmeI TCCRAC 3 cut(s) 210, 900, 1289
MroXI GAANNNNTTC 2 cut(s) 20, 1359
MseI TTAA 1 cut(s) 669
MspA1I CMGCKG 2 cut(s) 1208, 1697
MspI CCGG 3 cut(s) 134, 1305, 1605
MspR9I CCNGG 2 cut(s) 1041, 1723
MvaI CCWGG 2 cut(s) 1041, 1723
MvnI CGCG 2 cut(s) 120, 1523
MwoI GCNNNNNNNGC 4 cut(s) 145, 161, 361, 1616
NlaIII CATG 5 cut(s) 299, 520, 653, 751, 1103
NlaIV GGNNCC 6 cut(s) 439, 480, 1076, 1379, 1609, 1693
NmuCI GTSAC 2 cut(s) 275, 1030
NruI TCGCGA 1 cut(s) 1523
NspI RCATGY 1 cut(s) 1103
NspV TTCGAA 1 cut(s) 225
PaeI GCATGC 1 cut(s) 1103
PdmI GAANNNNTTC 2 cut(s) 20, 1359
PfeI GAWTC 4 cut(s) 206, 826, 953, 1153
PinAI ACCGGT 1 cut(s) 1304
PkrI GCNGC 8 cut(s) 141, 174, 1207, 1618, 1633, 1636, 1696, 1699
PleI GAGTC 5 cut(s) 282, 378, 400, 508, 610
PpsI GAGTC 5 cut(s) 282, 378, 400, 508, 610
Psp6I CCWGG 2 cut(s) 1039, 1721
PspFI CCCAGC 2 cut(s) 1078, 1163
PspGI CCWGG 2 cut(s) 1039, 1721
PspN4I GGNNCC 6 cut(s) 439, 480, 1076, 1379, 1609, 1693
PspPI GGNCC 1 cut(s) 524
PsrI GAACNNNNNNTAC 2 cut(s) 1067, 1099
PsuI RGATCY 2 cut(s) 1221, 1429
PvuII CAGCTG 1 cut(s) 1208
RruI TCGCGA 1 cut(s) 1523
RsaI GTAC 6 cut(s) 5, 260, 338, 596, 656, 1666
RsaNI GTAC 6 cut(s) 4, 259, 337, 595, 655, 1665
SalI GTCGAC 1 cut(s) 1714
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 8 cut(s) 140, 173, 1206, 1617, 1632, 1635, 1695, 1698
Sau96I GGNCC 1 cut(s) 524
SchI GAGTC 5 cut(s) 283, 379, 400, 509, 610
ScrFI CCNGG 2 cut(s) 1041, 1723
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 4 cut(s) 135, 859, 1221, 1521
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 356, 1441
SmoI CTYRAG 2 cut(s) 356, 1441
SphI GCATGC 1 cut(s) 1103
Sse9I AATT 5 cut(s) 398, 690, 724, 882, 1319
SsiI CCGC 8 cut(s) 35, 120, 588, 1035, 1569, 1617, 1635, 1695
SspI AATATT 1 cut(s) 1404
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 1039, 1721
StyI CCWWGG 2 cut(s) 262, 1007
TaaI ACNGT 5 cut(s) 196, 1390, 1423, 1507, 1546
TaiI ACGT 1 cut(s) 600
TaqI TCGA 9 cut(s) 54, 225, 457, 512, 1014, 1113, 1343, 1476, 1715
TasI AATT 5 cut(s) 398, 690, 724, 882, 1319
TatI WGTACW 2 cut(s) 3, 654
TauI GCSGC 3 cut(s) 1619, 1637, 1697
TfiI GAWTC 4 cut(s) 206, 826, 953, 1153
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 4 cut(s) 664, 1549, 1618, 1633
TseFI GTSAC 2 cut(s) 275, 1030
TseI GCWGC 5 cut(s) 139, 172, 1205, 1631, 1697
Tsp45I GTSAC 2 cut(s) 275, 1030
TspDTI ATGAA 5 cut(s) 550, 736, 906, 1082, 1659
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 4 cut(s) 664, 1549, 1618, 1633
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 2 cut(s) 724, 1319
XceI RCATGY 1 cut(s) 1103
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XmiI GTMKAC 1 cut(s) 1715
XmnI GAANNNNTTC 2 cut(s) 20, 1359
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.