MD16G1144800.v1.1

Calnexin homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
11137038 .. 11139768
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1144800.v1.1.491

Sequence Viewer

Length: 1653 bp
ATGGCAGGAACACGGTGGCGTAATTTCACTGGCCTCCTTCTTCTTCTGCTGGTACTGCTGATTGGCTGCTCCGCTTCTCAGATCCGCGCCTCTTCCGAACATGAAGTCGATTCGATCTTTTACGAGCCATTTTCTGAGTCGTTTGAAGGCCGATGGATTGTTTCTTCCAAGGATGAGTACCAAGGGGTATGGAAACTGTCCAAAAGTGAGGGACATGATGATTACGGGCTGTTGGTAAGTGAGAAGGCAAGGAAGTATGCAGTGGTGAAAGAGCTCGACAAGGCTGTGAGCCTCAAGGATGGAACCGTTGTCCTGCAGTTTGAGGTCCGGCTCCAGAATGGGCTCGAATGTGGCGGTGCTTACTTGAAATACCTCCGCCCCCAGGATGCGGGTTGGAAAGCAGAGGAATTTGACAATGAGTCGCCTTATTCCATTATGTTTGGACCGGACAAATGTGGTTCCACAAACAAGGTTCATTTCATCTTCAAGCACAAGAACCCCAGGAGTGGAGAGTTTGTTGAGCACCATCTCAAGGACCCTCCATCCGTGCCCTCCGACAAGCTGTCTCATGTTTATACTGCGATACTGAAACCTGATAACCAAGTGAGGATTTTAATTGATGGGGAGGAGATGAAGAATGCGAATCTTCTTTCGGCTAAAGATTTTGAGCCTGCGTTGATTCCAGCCAAGACAATTCCTGACCCTGAGGATAAGAAGCCAGAGGATTGGGATGAGCGGGCAAAGATTCCAGACCCCAATGCCGTTAAGCCTGATGATTGGGATGAGGATGCACCAATGGAAATTGAAGACGAGGATGCTGTGAAACCTGAAGGGTGGTTGGATGATGAACCTGATGAGATTGATGACCCTGAGGCGACAAGACCAGAAGATTGGGACGACGAAGAGGATGGTGTATGGGAACCGCCGAAGGCTGATAACCCCAAGTGTTCATTGGCACCAGGTTGTGGAGAATGGAAGAAGCCAATGAAACATAATCCTGCTTATAAAGGAAAATGGAGCCCTCCTATGATTGACAACCCCAGTTACAAGGGCATATGGAAGCCTCGAGAAATTCCAAATCCTGATTACTTTGAGACCGAGAAACCCGACTTTGAGCCCATTGCTGCTATTGGCATTGAGATCTGGACAATGGAGGATGGAATATTGTTTGACAATATTCTCATAGCTGATGATGAGAGGGTTGCTGAATCTGTTAGGCTAACAACATGGAAGCGGAAGTTTGAGACTGAAAAAGAGAAACAGAAGGCTGAGGAAGAAGCTGCAGGTCTTTCGGATGGACTCTCAAGCTACCAGAAGAAAGTATTCGACCTTCTCTACAAAATAGCAGATGTTTCTTTTTTGGATGCATACAAACCCAAGATCATTGATCTGATTGAGAAGGGAGAAAAACAGCCCAATATTACAATTGGTGTTATTGTTTCCGTAGTGGTTGTTCTCTTGTCAATGTTCTTTAAACTCTTCTTTGGTGGCAAGAAACCAGTGGTAACTGTTCCTGAGCCAAACAGGGCTACGGCTGCAGAGACTCCCCGCGATGAAGGAAGCAGTGGCGAGAAGGAAGATGAGAATGAGAAAGAAGAAGAAGAAGCTGCTCCTCCTCCCCGCAGGCGGCCTACCACCAGAAGGGAAACATGA

Protein Analysis

551

Amino Acids

62.37

Weight (kDa)

4.73

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 40 - 395 3e-146 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
Acc36I ACCTGC 1 cut(s) 1274
AccB1I GGYRCC 1 cut(s) 955
AccB7I CCANNNNNTGG 1 cut(s) 965
AccBSI CCGCTC 1 cut(s) 736
AccII CGCG 2 cut(s) 87, 1551
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 2 cut(s) 407, 1071
AcuI CTGAAG 1 cut(s) 849
AfaI GTAC 2 cut(s) 54, 179
AfiI CCNNNNNNNGG 7 cut(s) 382, 388, 506, 532, 965, 1626, 1641
AgsI TTSAA 4 cut(s) 146, 367, 487, 806
AhdI GACNNNNNGTC 2 cut(s) 418, 562
AjnI CCWGG 3 cut(s) 381, 500, 958
AluBI AGCT 6 cut(s) 274, 562, 1187, 1280, 1308, 1607
AluI AGCT 6 cut(s) 274, 562, 1187, 1280, 1308, 1607
Alw21I GWGCWC 2 cut(s) 276, 525
Alw26I GTCTC 4 cut(s) 570, 1088, 1238, 1535
AlwI GGATC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 1065
AoxI GGCC 3 cut(s) 31, 148, 1628
ApeKI GCWGC 5 cut(s) 66, 1124, 1280, 1535, 1607
ApoI RAATTY 2 cut(s) 407, 1071
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
Asp700I GAANNNNTTC 1 cut(s) 1322
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 325, 443, 535
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 1065
AvaII GGWCC 3 cut(s) 325, 443, 535
AxyI CCTNAGG 2 cut(s) 705, 870
BaeGI GKGCMC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 955
BanII GRGCYC 4 cut(s) 276, 345, 1022, 1119
BarI GAAGNNNNNNTAC 2 cut(s) 1314, 1346
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 2 cut(s) 276, 525
BbvCI CCTCAGC 1 cut(s) 1269
BbvI GCAGC 5 cut(s) 53, 1111, 1267, 1522, 1594
BccI CCATC 8 cut(s) 147, 293, 534, 550, 614, 902, 1151, 1289
BceAI ACGGC 2 cut(s) 746, 1548
BcgI CGANNNNNNTGC 2 cut(s) 1272, 1306
BciT130I CCWGG 3 cut(s) 383, 502, 960
BcoDI GTCTC 4 cut(s) 570, 1088, 1238, 1535
BfmI CTRYAG 3 cut(s) 314, 1281, 1536
BfuAI ACCTGC 1 cut(s) 1274
BglII AGATCT 1 cut(s) 1140
BisI GCNGC 6 cut(s) 67, 1125, 1281, 1536, 1608, 1628
BlsI GCNGC 6 cut(s) 68, 1126, 1282, 1537, 1609, 1629
Bme1390I CCNGG 3 cut(s) 383, 502, 960
Bme18I GGWCC 3 cut(s) 325, 443, 535
BmeRI GACNNNNNGTC 2 cut(s) 418, 562
BmeT110I CYCGRG 1 cut(s) 1065
BmgT120I GGNCC 3 cut(s) 325, 443, 535
BmiI GGNNCC 7 cut(s) 304, 332, 460, 537, 921, 957, 1019
BmrFI CCNGG 3 cut(s) 383, 502, 960
BmrI ACTGGG 1 cut(s) 1035
BmsI GCATC 4 cut(s) 376, 778, 805, 1354
BmuI ACTGGG 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 317
Bpu10I CCTNAGC 2 cut(s) 1269, 1515
BpuEI CTTGAG 3 cut(s) 278, 515, 1288
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 4 cut(s) 168, 181, 381, 500
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 7 cut(s) 382, 388, 506, 532, 965, 1626, 1641
Bse1I ACTGG 3 cut(s) 34, 1041, 1499
Bse21I CCTNAGG 2 cut(s) 705, 870
Bse3DI GCAATG 1 cut(s) 1119
BseBI CCWGG 3 cut(s) 383, 502, 960
BseDI CCNNGG 4 cut(s) 168, 181, 381, 500
BseLI CCNNNNNNNGG 7 cut(s) 382, 388, 506, 532, 965, 1626, 1641
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 6 cut(s) 92, 126, 696, 861, 1260, 1506
BseNI ACTGG 3 cut(s) 34, 1041, 1499
BseRI GAGGAG 3 cut(s) 641, 1602, 1605
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 5 cut(s) 53, 1111, 1267, 1522, 1594
Bsh1236I CGCG 2 cut(s) 87, 1551
BshFI GGCC 3 cut(s) 33, 150, 1630
BshNI GGYRCC 1 cut(s) 955
BsiHKAI GWGCWC 2 cut(s) 276, 525
BsiHKCI CYCGRG 1 cut(s) 1065
BsiSI CCGG 2 cut(s) 328, 446
BslFI GGGAC 2 cut(s) 225, 908
BslI CCNNNNNNNGG 7 cut(s) 382, 388, 506, 532, 965, 1626, 1641
BsmAI GTCTC 4 cut(s) 570, 1088, 1238, 1535
BsmFI GGGAC 2 cut(s) 225, 908
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 3 cut(s) 33, 150, 1630
Bso31I GGTCTC 1 cut(s) 1088
BsoBI CYCGRG 1 cut(s) 1065
Bsp1286I GDGCHC 6 cut(s) 276, 345, 525, 552, 1022, 1119
Bsp143I GATC 5 cut(s) 81, 114, 1140, 1380, 1387
BspANI GGCC 3 cut(s) 33, 150, 1630
BspCNI CTCAG 6 cut(s) 91, 127, 697, 862, 1261, 1507
BspFNI CGCG 2 cut(s) 87, 1551
BspLI GGNNCC 7 cut(s) 304, 332, 460, 537, 921, 957, 1019
BspMAI CTGCAG 3 cut(s) 318, 1285, 1540
BspMI ACCTGC 1 cut(s) 1274
BspPI GGATC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 1088
BsrBI CCGCTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 1119
BsrI ACTGG 3 cut(s) 34, 1041, 1499
BssECI CCNNGG 4 cut(s) 168, 181, 381, 500
BssMI GATC 5 cut(s) 81, 114, 1140, 1380, 1387
BssT1I CCWWGG 2 cut(s) 168, 181
Bst2UI CCWGG 3 cut(s) 383, 502, 960
Bst4CI ACNGT 4 cut(s) 15, 198, 307, 1510
Bst6I CTCTTC 3 cut(s) 97, 897, 1484
BstC8I GCNNGC 3 cut(s) 672, 738, 1625
BstDEI CTNAG 6 cut(s) 78, 135, 705, 870, 1269, 1515
BstFNI CGCG 2 cut(s) 87, 1551
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 5 cut(s) 84, 117, 1143, 1383, 1390
BstMAI GTCTC 4 cut(s) 570, 1088, 1238, 1535
BstMBI GATC 5 cut(s) 81, 114, 1140, 1380, 1387
BstMWI GCNNNNNNNGC 2 cut(s) 55, 1535
BstNI CCWGG 3 cut(s) 383, 502, 960
BstSCI CCNGG 3 cut(s) 381, 500, 958
BstSFI CTRYAG 3 cut(s) 314, 1281, 1536
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 2 cut(s) 87, 1551
BstV1I GCAGC 5 cut(s) 53, 1111, 1267, 1522, 1594
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 2 cut(s) 81, 1140
BstXI CCANNNNNNTGG 2 cut(s) 726, 891
BstYI RGATCY 2 cut(s) 81, 1140
Bsu36I CCTNAGG 2 cut(s) 705, 870
BsuRI GGCC 3 cut(s) 33, 150, 1630
BtgZI GCGATG 1 cut(s) 1566
BtsI GCAGTG 2 cut(s) 267, 1570
BtsIMutI CAGTG 4 cut(s) 27, 267, 1506, 1570
BveI ACCTGC 1 cut(s) 1274
Cac8I GCNNGC 3 cut(s) 672, 738, 1625
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 3 cut(s) 325, 443, 535
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 2 cut(s) 53, 178
CviAII CATG 5 cut(s) 101, 215, 569, 1227, 1650
CviQI GTAC 2 cut(s) 53, 178
DdeI CTNAG 6 cut(s) 78, 135, 705, 870, 1269, 1515
DpnI GATC 5 cut(s) 83, 116, 1142, 1382, 1389
DpnII GATC 5 cut(s) 81, 114, 1140, 1380, 1387
DraI TTTAAA 1 cut(s) 1474
DriI GACNNNNNGTC 2 cut(s) 418, 562
Eam1104I CTCTTC 3 cut(s) 97, 897, 1484
Eam1105I GACNNNNNGTC 2 cut(s) 418, 562
EarI CTCTTC 3 cut(s) 97, 897, 1484
EciI GGCGGA 1 cut(s) 365
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 168, 181
Eco24I GRGCYC 4 cut(s) 276, 345, 1022, 1119
Eco31I GGTCTC 1 cut(s) 1088
Eco47I GGWCC 3 cut(s) 325, 443, 535
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 849
Eco81I CCTNAGG 2 cut(s) 705, 870
Eco88I CYCGRG 1 cut(s) 1065
EcoICRI GAGCTC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 381, 500, 958
EcoT14I CCWWGG 2 cut(s) 168, 181
EcoT22I ATGCAT 1 cut(s) 1369
EcoT38I GRGCYC 4 cut(s) 276, 345, 1022, 1119
ErhI CCWWGG 2 cut(s) 168, 181
FaeI CATG 5 cut(s) 104, 218, 572, 1230, 1653
FaqI GGGAC 2 cut(s) 225, 908
FatI CATG 5 cut(s) 100, 214, 568, 1226, 1649
FauI CCCGC 4 cut(s) 382, 729, 1556, 1628
FauNDI CATATG 1 cut(s) 1055
Fnu4HI GCNGC 6 cut(s) 67, 1125, 1281, 1536, 1608, 1628
FriOI GRGCYC 4 cut(s) 276, 345, 1022, 1119
Fsp4HI GCNGC 6 cut(s) 67, 1125, 1281, 1536, 1608, 1628
GlaI GCGC 1 cut(s) 88
GluI GCNGC 6 cut(s) 67, 1125, 1281, 1536, 1608, 1628
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 3 cut(s) 33, 150, 1630
HapII CCGG 2 cut(s) 328, 446
HhaI GCGC 1 cut(s) 89
Hin1II CATG 5 cut(s) 104, 218, 572, 1230, 1653
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 9 cut(s) 110, 137, 419, 643, 679, 745, 1208, 1299, 1543
HpaII CCGG 2 cut(s) 328, 446
HphI GGTGA 1 cut(s) 277
Hpy188I TCNGA 6 cut(s) 81, 97, 136, 556, 1294, 1392
Hpy188III TCNNGA 7 cut(s) 334, 698, 749, 1067, 1082, 1144, 1514
Hpy99I CGWCG 1 cut(s) 902
HpyCH4III ACNGT 4 cut(s) 15, 198, 307, 1510
HpyCH4V TGCA 6 cut(s) 260, 316, 791, 1283, 1367, 1538
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 1535
HpyF3I CTNAG 6 cut(s) 78, 135, 705, 870, 1269, 1515
Hsp92II CATG 5 cut(s) 104, 218, 572, 1230, 1653
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 5 cut(s) 81, 114, 1140, 1380, 1387
LmnI GCTCC 4 cut(s) 74, 336, 1017, 1615
Lsp1109I GCAGC 5 cut(s) 53, 1111, 1267, 1522, 1594
LweI GCATC 4 cut(s) 376, 778, 805, 1354
MabI ACCWGGT 1 cut(s) 958
MaeIII GTNAC 2 cut(s) 1043, 1504
MalI GATC 5 cut(s) 83, 116, 1142, 1382, 1389
MbiI CCGCTC 1 cut(s) 736
MboI GATC 5 cut(s) 81, 114, 1140, 1380, 1387
MfeI CAATTG 1 cut(s) 1425
MflI RGATCY 2 cut(s) 81, 1140
MhlI GDGCHC 6 cut(s) 276, 345, 525, 552, 1022, 1119
MluCI AATT 7 cut(s) 22, 407, 615, 693, 801, 1071, 1425
MlyI GAGTC 4 cut(s) 146, 428, 1293, 1537
MmeI TCCRAC 3 cut(s) 374, 579, 819
Mph1103I ATGCAT 1 cut(s) 1369
MroXI GAANNNNTTC 1 cut(s) 1322
MseI TTAA 3 cut(s) 614, 765, 1473
MspI CCGG 2 cut(s) 328, 446
MspR9I CCNGG 3 cut(s) 383, 502, 960
MunI CAATTG 1 cut(s) 1425
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 3 cut(s) 383, 502, 960
MvnI CGCG 2 cut(s) 87, 1551
MwoI GCNNNNNNNGC 2 cut(s) 55, 1535
NdeI CATATG 1 cut(s) 1055
NdeII GATC 5 cut(s) 81, 114, 1140, 1380, 1387
NlaIII CATG 5 cut(s) 104, 218, 572, 1230, 1653
NlaIV GGNNCC 7 cut(s) 304, 332, 460, 537, 921, 957, 1019
NsiI ATGCAT 1 cut(s) 1369
PaeR7I CTCGAG 1 cut(s) 1065
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 1322
PfeI GAWTC 5 cut(s) 110, 643, 679, 745, 1208
PflMI CCANNNNNTGG 1 cut(s) 965
PkrI GCNGC 6 cut(s) 68, 1126, 1282, 1537, 1609, 1629
PleI GAGTC 4 cut(s) 145, 427, 1293, 1537
PpsI GAGTC 4 cut(s) 145, 427, 1293, 1537
PpuMI RGGWCCY 1 cut(s) 535
PsiI TTATAA 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 3 cut(s) 381, 500, 958
PspGI CCWGG 3 cut(s) 381, 500, 958
PspN4I GGNNCC 7 cut(s) 304, 332, 460, 537, 921, 957, 1019
PspPI GGNCC 3 cut(s) 325, 443, 535
PspPPI RGGWCCY 1 cut(s) 535
PsrI GAACNNNNNNTAC 2 cut(s) 1437, 1469
PstI CTGCAG 3 cut(s) 318, 1285, 1540
PsuI RGATCY 2 cut(s) 81, 1140
RsaI GTAC 2 cut(s) 54, 179
RsaNI GTAC 2 cut(s) 53, 178
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 614, 765, 1473
SatI GCNGC 6 cut(s) 67, 1125, 1281, 1536, 1608, 1628
Sau3AI GATC 5 cut(s) 81, 114, 1140, 1380, 1387
Sau96I GGNCC 3 cut(s) 325, 443, 535
SchI GAGTC 4 cut(s) 146, 428, 1293, 1537
ScrFI CCNGG 3 cut(s) 383, 502, 960
SduI GDGCHC 6 cut(s) 276, 345, 525, 552, 1022, 1119
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 4 cut(s) 376, 778, 805, 1354
SfcI CTRYAG 3 cut(s) 314, 1281, 1536
Sfr274I CTCGAG 1 cut(s) 1065
SinI GGWCC 3 cut(s) 325, 443, 535
SlaI CTCGAG 1 cut(s) 1065
SmlI CTYRAG 4 cut(s) 293, 530, 1065, 1303
SmoI CTYRAG 4 cut(s) 293, 530, 1065, 1303
Sse9I AATT 7 cut(s) 22, 407, 615, 693, 801, 1071, 1425
SspI AATATT 3 cut(s) 1164, 1177, 1420
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 381, 500, 958
StyI CCWWGG 2 cut(s) 168, 181
TaaI ACNGT 4 cut(s) 15, 198, 307, 1510
TaqI TCGA 6 cut(s) 108, 113, 276, 345, 1066, 1326
TaqII GACCGA 1 cut(s) 1112
TasI AATT 7 cut(s) 22, 407, 615, 693, 801, 1071, 1425
TauI GCSGC 1 cut(s) 1630
TfiI GAWTC 5 cut(s) 110, 643, 679, 745, 1208
Tru1I TTAA 3 cut(s) 614, 765, 1473
Tru9I TTAA 3 cut(s) 614, 765, 1473
TscAI CASTG 4 cut(s) 34, 267, 1506, 1570
TseI GCWGC 5 cut(s) 66, 1124, 1280, 1535, 1607
TspDTI ATGAA 8 cut(s) 117, 464, 469, 647, 861, 939, 1001, 1569
TspGWI ACGGA 2 cut(s) 535, 1432
TspRI CASTG 4 cut(s) 34, 267, 1506, 1570
Van91I CCANNNNNTGG 1 cut(s) 965
VpaK11BI GGWCC 3 cut(s) 325, 443, 535
XapI RAATTY 2 cut(s) 407, 1071
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XhoI CTCGAG 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 1322
Zsp2I ATGCAT 1 cut(s) 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.