Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003158

Physical Location & Seq

Genomic Coordinates Reverse (-)

8213810 .. 8214779

Gene Structure 970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1097600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAATTGAGGACGAGGATGCTGTGAAACCTGAAGGGTGGTTGGATGATGAGCCTGAAGAGATTGATGACCCTGAGGCGACAAGGCCAGAAGATTGGGACGATGAAGAGGATGGTGTATGGGAACCGACAAAGACGGATAACCCCAAGTGTTCATTGGCACCTGGTTGTGGAGAATGGAAGAAGCCAATGAAACATAATCCTGCTTATAAAGGAAAATGGAGCCCTCCTATGATTGACAACCCCAGTTACAAGGGCATCTGGAAGCCTCGAGAAATTCCAAACCCTGATTACTTCGAGACTGAGAAGCCCAACTTTGAGCCCATTGCTGCTATTGGCATTGAGATCTGGACAATGCAGGACGGAATATTGTTTGACAATATGCTCATAGCTGATGATGAGAAGGTTGCTGAATCTGTTAGGCTAACAACGTGGAAGCCGAAGTTTGAAACTGAGAAAGAGAAACAGAAGGCTGAGGAAGAAGCTGCAGGTCTTTCCGATGGACTCTCAAGCTACCAGAAGAAAGTATTCGACCTTCTTTACAAGATAGCAGATGTTTCTTTCTTGGATGCATACAAACCCAGGATCATTGAATTGATTGAGAAGGGAGAAAAACAGCCCAATATTACAATTGGTGTTATCGTCTCTGTCGTGGTTGTTCTCTTGTCAATTTCTTTAAAATCCTGTTTGGTGGCAAGAAACCGGCGGTGGTATACATCTAGCATAGATTCACTTTTCTGTAGTGGTAATGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko04918 ko05166 map04141 map04145 map04612 map04918 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

253

Amino Acids

28.77

Weight (kDa)

4.49

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	2 - 130	1.6e-58	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07340 AT5G07340 AT5G61790
fragaria_vesca	FvH4_4g22170 FvH4_5g09940
malus_domestica	MD00G1076300.v1.1 MD08G1097600.v1.1 MD08G1097700.v1.1 MD13G1134200.v1.1 MD14G1144700.v1.1 MD16G1144800.v1.1
prunus_persica	Prupe.1G211400_v2.0.a1 Prupe.5G139100_v2.0.a1 Prupe.5G139100_v2.0.a1
pyrus_communis	pycom06g11940 pycom13g11700 pycom14g12020 pycom16g11430
rosa_chinensis	RchiOBHm_Chr4g0428401 RchiOBHm_Chr7g0188351
rosa_laevigata	RLG00000004706 RLG00000007154
rosa_multiflora	Rmu_sc0004698.1_g000004 Rmu_sc0008750.1_g000004
rosa_roxburghii	Rroxscaffold_3G00266480 Rroxscaffold_5G00370070
rosa_rugosa	Rorug04G0225200 Rorug06G0490000 Rorug06G0490100
rosa_samantha	Rh4AG282400 Rh4BG288000 Rh4CG303600 Rh4DG285100 Rh7BG096200 Rh7CG096500
rosa_wichuraiana	Rw4G024510 Rw7G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	713
AciI	CCGC	1 cut(s)	706
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	2 cut(s)	54, 78
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	449, 593
AjnI	CCWGG	2 cut(s)	163, 581
AluBI	AGCT	3 cut(s)	392, 485, 513
AluI	AGCT	3 cut(s)	392, 485, 513
Alw26I	GTCTC	2 cut(s)	293, 649
AlwI	GGATC	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	329, 485
ApoI	RAATTY	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	270
AxyI	CCTNAGG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	2 cut(s)	227, 324
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	316, 472
BccI	CCATC	2 cut(s)	107, 494
BciT130I	CCWGG	2 cut(s)	165, 583
BcoDI	GTCTC	2 cut(s)	293, 649
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	486, 739
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	2 cut(s)	330, 486
BlsI	GCNGC	2 cut(s)	331, 487
Bme1390I	CCNGG	2 cut(s)	165, 583
BmeT110I	CYCGRG	1 cut(s)	270
BmiI	GGNNCC	3 cut(s)	126, 162, 224
BmrFI	CCNGG	2 cut(s)	165, 583
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	10, 267, 559
BmuI	ACTGGG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	702
Bse1I	ACTGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	165, 583
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	4 cut(s)	25, 52, 118, 574
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	4 cut(s)	66, 294, 444, 465
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	316, 472
BshFI	GGCC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	293, 649
BsmBI	CGTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	227, 324
Bsp143I	GATC	2 cut(s)	345, 585
BspACI	CCGC	1 cut(s)	706
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	4 cut(s)	67, 295, 445, 466
BspLI	GGNNCC	3 cut(s)	126, 162, 224
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	2 cut(s)	345, 585
BssNAI	GTATAC	1 cut(s)	714
Bst1107I	GTATAC	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	165, 583
Bst6I	CTCTTC	2 cut(s)	54, 102
BstDEI	CTNAG	4 cut(s)	75, 303, 453, 474
BstF5I	GGATG	4 cut(s)	25, 52, 118, 574
BstKTI	GATC	2 cut(s)	348, 588
BstMAI	GTCTC	2 cut(s)	293, 649
BstMBI	GATC	2 cut(s)	345, 585
BstNI	CCWGG	2 cut(s)	165, 583
BstSCI	CCNGG	2 cut(s)	163, 581
BstSFI	CTRYAG	2 cut(s)	486, 739
BstV1I	GCAGC	2 cut(s)	316, 472
BstX2I	RGATCY	1 cut(s)	345
BstXI	CCANNNNNNTGG	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	345
BstZ17I	GTATAC	1 cut(s)	714
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	4 cut(s)	25, 52, 118, 574
BveI	ACCTGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	702
CsiI	ACCWGGT	1 cut(s)	163
DdeI	CTNAG	4 cut(s)	75, 303, 453, 474
DpnI	GATC	2 cut(s)	347, 587
DpnII	GATC	2 cut(s)	345, 585
DraI	TTTAAA	1 cut(s)	678
Eam1104I	CTCTTC	2 cut(s)	54, 102
EarI	CTCTTC	2 cut(s)	54, 102
Eco24I	GRGCYC	2 cut(s)	227, 324
Eco57I	CTGAAG	2 cut(s)	54, 78
Eco81I	CCTNAGG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	163, 581
EcoT22I	ATGCAT	1 cut(s)	574
EcoT38I	GRGCYC	2 cut(s)	227, 324
Esp3I	CGTCTC	1 cut(s)	649
FaiI	YATR	9 cut(s)	121, 198, 210, 233, 383, 389, 574, 714, 725
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	713
Fnu4HI	GCNGC	2 cut(s)	330, 486
FokI	GGATG	4 cut(s)	32, 59, 125, 581
FriOI	GRGCYC	2 cut(s)	227, 324
Fsp4HI	GCNGC	2 cut(s)	330, 486
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	2 cut(s)	330, 486
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	1 cut(s)	703
HinfI	GANTC	3 cut(s)	413, 504, 728
HpaII	CCGG	1 cut(s)	703
Hpy166II	GTNNAC	1 cut(s)	714
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	4 cut(s)	262, 272, 298, 349
Hpy8I	GTNNAC	1 cut(s)	714
HpyAV	CCTTC	5 cut(s)	29, 397, 463, 545, 598
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	3 cut(s)	358, 488, 572
HpyF3I	CTNAG	4 cut(s)	75, 303, 453, 474
HpySE526I	ACGT	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	345, 585
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	316, 472
LweI	GCATC	3 cut(s)	10, 267, 559
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	347, 587
MboI	GATC	2 cut(s)	345, 585
MboII	GAAGA	6 cut(s)	71, 104, 119, 193, 491, 532
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	227, 324
MluCI	AATT	5 cut(s)	6, 276, 593, 630, 669
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	7 cut(s)	4, 10, 70, 103, 237, 279, 469
Mph1103I	ATGCAT	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	1 cut(s)	677
MspI	CCGG	1 cut(s)	703
MspR9I	CCNGG	2 cut(s)	165, 583
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	2 cut(s)	165, 583
NdeII	GATC	2 cut(s)	345, 585
NlaIV	GGNNCC	3 cut(s)	126, 162, 224
NsiI	ATGCAT	1 cut(s)	574
PaeR7I	CTCGAG	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	2 cut(s)	437, 648
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	413, 728
PkrI	GCNGC	2 cut(s)	331, 487
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	163, 581
PspGI	CCWGG	2 cut(s)	163, 581
PspN4I	GGNNCC	3 cut(s)	126, 162, 224
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	2 cut(s)	330, 486
Sau3AI	GATC	2 cut(s)	345, 585
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	165, 583
SduI	GDGCHC	2 cut(s)	227, 324
SetI	ASST	9 cut(s)	34, 166, 394, 408, 434, 487, 493, 515, 537
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	3 cut(s)	10, 267, 559
SfcI	CTRYAG	2 cut(s)	486, 739
Sfr274I	CTCGAG	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	270, 508
SmoI	CTYRAG	2 cut(s)	270, 508
Sse9I	AATT	5 cut(s)	6, 276, 593, 630, 669
SsiI	CCGC	1 cut(s)	706
SspI	AATATT	2 cut(s)	369, 625
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	2 cut(s)	163, 581
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	271, 297, 531
TasI	AATT	5 cut(s)	6, 276, 593, 630, 669
TfiI	GAWTC	2 cut(s)	413, 728
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TseI	GCWGC	2 cut(s)	329, 485
TspDTI	ATGAA	3 cut(s)	120, 144, 206
TspGWI	ACGGA	2 cut(s)	152, 378
XapI	RAATTY	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	1 cut(s)	720
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.