Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003158

Physical Location & Seq

Genomic Coordinates Forward (+)

2317126 .. 2319843

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGAGAGAACGGATTATTACATTCGTTTCGCTGCTTCTTGTAGCTTTGCTTTCGTTTCCCAGTGTTAGCTACTGTGACGACCAAACGATCCTGTATGAATCGTTTGACGAGCCTTTTGATGGTCGCTGGGTCGTTTCAGAGAAAGCTGAATACCAAGGTGTGTGGAAGCACGAGAAGAGTGAAGGGCATGATGATTATGGACTTCTAGTGAGTGAGAAAGCTAAGAAGTACGGAATAGTTAAAGAGCTTGATGTTGATGAGCCTCTAAACCTTAACGAAGGAACTGTTGTTCTTCAATACGAGGCTCGTTTCCAAGAAGGGCTTGAGTGTGGTGGTGCTTACTTAAAGTATCTTCGTCCTCAAGAAGCTGGATGGGTTCCTCAAGGGTTTGATAATGATTCTCCTTACTCTATCATGTTTGGACCTGATAAGTGTGGTGCTACCAACAAGGTTCATTTCATCTTGAAGCATAAGAATCCCAAGAGTGGCGAGTTTGTTGAGCACCATCTCAAGTTCCCTCCTTCTGTTCCGTTTGACATGCTTTCTCATGTCTACACTGCGGTCTTGAAATCTGATAATGAGGTGAGGATTTTGGTCGATGGTGAGGAGAAGAAGAAGGGTAATTTACTGTCTGCTGAAGACTTTGAGCCTCCGTTGATTCCTTCCAAGACCATCCCTGATCCAGAGGACAAGAAGCCAGAAGACTGGGATGAGAGAGCCAAGATTCCTGATCCTAATGCTGTGAAGCCTGATGACTGGGATGAGGATGCACCCATGGAGATTGAAGATGAGGAAGCTGAGAAACCCGAAGGATGGTTGGATGATGAGCCTGTAGAGGTTGAAGACCCCGAGGCAAGCAAGCCAGAAGATTGGGATGACGAGGAAGATGGTGAGTGGGAGGCTCCTAAGGTTTCCAACACCAAGTGTGAGGCAGCACCCGGATGTGGCGAATGGAAGAGACCGATGAAGAGGAACCCTGCTTACAAGGGCAAATGGAGCTCACCTCTCATAGATAACCCAGCTTACAAGGGAATCTGGAAACCAAGAGACATTCCAAATCCTGATTATTTTGAGCTTGAGAGGCCGAATTTGGAGCCCATTGCTGCCATTGGTATTGAGATATGGACAATGCAAGACGGTATCTTATTTGACAACATCTTGATATCTAAAGACGAGAAGGTTGCTGAAACTTACAGACAAAGCACTTGGAAGCCCAAGTTTGATGTGGAGAAAGAGAAACAAAAGGCAGAGGATGAAGCTGCTGGTGAGGCAGATGGTCTCAAGAGTTACCAGAAGAAGGTGTTCGACCTCTTGTACAAGGTTGCAGACATTTCTTTCCTTAGTGCGTACAAGTCAAAGATTATGGAACTTATTGAGAAAGCTGAAACACAGCCAAACTTAACCATCGGTGTGCTCATTTCCATCGTGATCGTCTTCCTCTCTCTCTTCTTCAAGCTCATATTTGGTGGTGCAAAGGCTAAGGTAGAAAAGAAGAAACCGGAAACAGCTGCAGAGACCTCGACAAGCGAGGCAAAGACAGAGGAGAAAGCAGAAGCGGTGGCTGCACCACGAAAGAGGCAGACGAGGCGTGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko04918 ko05166 map04141 map04145 map04612 map04918 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

532

Amino Acids

60.49

Weight (kDa)

4.74

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	32 - 388	1.8e-142	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07340 AT5G07340 AT5G61790
fragaria_vesca	FvH4_4g22170 FvH4_5g09940
malus_domestica	MD00G1076300.v1.1 MD08G1097600.v1.1 MD08G1097700.v1.1 MD13G1134200.v1.1 MD14G1144700.v1.1 MD16G1144800.v1.1
prunus_persica	Prupe.1G211400_v2.0.a1 Prupe.5G139100_v2.0.a1 Prupe.5G139100_v2.0.a1
pyrus_communis	pycom06g11940 pycom13g11700 pycom14g12020 pycom16g11430
rosa_chinensis	RchiOBHm_Chr4g0428401 RchiOBHm_Chr7g0188351
rosa_laevigata	RLG00000004706 RLG00000007154
rosa_multiflora	Rmu_sc0004698.1_g000004 Rmu_sc0008750.1_g000004
rosa_roxburghii	Rroxscaffold_3G00266480 Rroxscaffold_5G00370070
rosa_rugosa	Rorug04G0225200 Rorug06G0490000 Rorug06G0490100
rosa_samantha	Rh4AG282400 Rh4BG288000 Rh4CG303600 Rh4DG285100 Rh7BG096200 Rh7CG096500
rosa_wichuraiana	Rw4G024510 Rw7G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	2 cut(s)	560, 1556
AclWI	GGATC	3 cut(s)	82, 674, 725
AcsI	RAATTY	1 cut(s)	1087
AcuI	CTGAAG	1 cut(s)	657
AdeI	CACNNNGTG	1 cut(s)	924
AfaI	GTAC	3 cut(s)	230, 1316, 1349
AfiI	CCNNNNNNNGG	5 cut(s)	119, 485, 813, 944, 1297
AgsI	TTSAA	6 cut(s)	296, 466, 568, 785, 842, 1453
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
Alw21I	GWGCWC	3 cut(s)	504, 1001, 1416
Alw26I	GTCTC	4 cut(s)	952, 1041, 1283, 1508
AlwI	GGATC	3 cut(s)	82, 674, 725
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	1 cut(s)	1082
ApeKI	GCWGC	6 cut(s)	31, 932, 1103, 1259, 1508, 1562
ApoI	RAATTY	1 cut(s)	1087
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp700I	GAANNNNTTC	1 cut(s)	1301
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	939
AsuHPI	GGTGA	5 cut(s)	595, 614, 902, 993, 1277
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	906
BanII	GRGCYC	2 cut(s)	1001, 1098
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	4 cut(s)	645, 708, 849, 1426
Bbv12I	GWGCWC	3 cut(s)	504, 1001, 1416
BbvI	GCAGC	6 cut(s)	18, 944, 1090, 1246, 1495, 1549
BcgI	CGANNNNNNTGC	4 cut(s)	1163, 1197, 1500, 1534
BcnI	CCSGG	1 cut(s)	939
BcoDI	GTCTC	4 cut(s)	952, 1041, 1283, 1508
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	2 cut(s)	831, 1509
BisI	GCNGC	6 cut(s)	32, 933, 1104, 1260, 1509, 1563
BlsI	GCNGC	6 cut(s)	33, 934, 1105, 1261, 1510, 1564
Bme1390I	CCNGG	1 cut(s)	939
Bme18I	GGWCC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	4 cut(s)	378, 903, 974, 1095
BmrFI	CCNGG	1 cut(s)	939
BmrI	ACTGGG	3 cut(s)	54, 715, 766
BmsI	GCATC	1 cut(s)	757
BmuI	ACTGGG	3 cut(s)	54, 715, 766
BpiI	GAAGAC	4 cut(s)	645, 708, 849, 1426
BplI	GAGNNNNNCTC	2 cut(s)	988, 1020
Bpu10I	CCTNAGC	1 cut(s)	1479
BpuEI	CTTGAG	6 cut(s)	344, 345, 366, 494, 1097, 1265
BpuMI	CCSGG	1 cut(s)	939
BsaI	GGTCTC	3 cut(s)	952, 1283, 1508
BsaJI	CCNNGG	3 cut(s)	154, 774, 849
BsaWI	WCCGGW	1 cut(s)	1498
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 485, 813, 944, 1297
Bse1I	ACTGG	3 cut(s)	60, 710, 761
Bse21I	CCTNAGG	1 cut(s)	906
Bse3DI	GCAATG	1 cut(s)	1098
BseDI	CCNNGG	3 cut(s)	154, 774, 849
BseLI	CCNNNNNNNGG	5 cut(s)	119, 485, 813, 944, 1297
BseMI	GCAATG	1 cut(s)	1098
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	3 cut(s)	60, 710, 761
BseRI	GAGGAG	2 cut(s)	620, 1556
BseXI	GCAGC	6 cut(s)	18, 944, 1090, 1246, 1495, 1549
BseYI	CCCAGC	2 cut(s)	126, 1018
BsgI	GTGCAG	1 cut(s)	1548
BshFI	GGCC	1 cut(s)	1084
BsiHKAI	GWGCWC	3 cut(s)	504, 1001, 1416
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	2 cut(s)	939, 1499
BslI	CCNNNNNNNGG	5 cut(s)	119, 485, 813, 944, 1297
BsmAI	GTCTC	4 cut(s)	952, 1041, 1283, 1508
BsnI	GGCC	1 cut(s)	1084
Bso31I	GGTCTC	3 cut(s)	952, 1283, 1508
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	4 cut(s)	504, 1001, 1098, 1416
Bsp1407I	TGTACA	1 cut(s)	1314
Bsp143I	GATC	4 cut(s)	87, 679, 730, 1428
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	2 cut(s)	560, 1556
BspANI	GGCC	1 cut(s)	1084
BspCNI	CTCAG	1 cut(s)	790
BspLI	GGNNCC	4 cut(s)	378, 903, 974, 1095
BspMAI	CTGCAG	1 cut(s)	1513
BspPI	GGATC	3 cut(s)	82, 674, 725
BspTNI	GGTCTC	3 cut(s)	952, 1283, 1508
BsrDI	GCAATG	1 cut(s)	1098
BsrGI	TGTACA	1 cut(s)	1314
BsrI	ACTGG	3 cut(s)	60, 710, 761
BssECI	CCNNGG	3 cut(s)	154, 774, 849
BssMI	GATC	4 cut(s)	87, 679, 730, 1428
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	154, 774
Bst2BI	CACGAG	1 cut(s)	170
Bst4CI	ACNGT	4 cut(s)	74, 286, 630, 1139
Bst6I	CTCTTC	4 cut(s)	170, 950, 962, 1451
BstAUI	TGTACA	1 cut(s)	1314
BstC8I	GCNNGC	2 cut(s)	856, 860
BstDEI	CTNAG	5 cut(s)	222, 798, 906, 1340, 1479
BstDSI	CCRYGG	1 cut(s)	774
BstKTI	GATC	4 cut(s)	90, 682, 733, 1431
BstMAI	GTCTC	4 cut(s)	952, 1041, 1283, 1508
BstMBI	GATC	4 cut(s)	87, 679, 730, 1428
BstMWI	GCNNNNNNNGC	5 cut(s)	996, 1081, 1268, 1562, 1585
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	937
BstSFI	CTRYAG	2 cut(s)	831, 1509
BstV1I	GCAGC	6 cut(s)	18, 944, 1090, 1246, 1495, 1549
BstV2I	GAAGAC	4 cut(s)	645, 708, 849, 1426
BstXI	CCANNNNNNTGG	2 cut(s)	705, 870
Bsu36I	CCTNAGG	1 cut(s)	906
BsuRI	GGCC	1 cut(s)	1084
BtgI	CCRYGG	1 cut(s)	774
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	67, 555
Cac8I	GCNNGC	2 cut(s)	856, 860
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	3 cut(s)	229, 1315, 1348
CspCI	CAANNNNNGTGG	2 cut(s)	143, 178
CviAII	CATG	5 cut(s)	188, 415, 538, 548, 775
CviQI	GTAC	3 cut(s)	229, 1315, 1348
DdeI	CTNAG	5 cut(s)	222, 798, 906, 1340, 1479
DpnI	GATC	4 cut(s)	89, 681, 732, 1430
DpnII	GATC	4 cut(s)	87, 679, 730, 1428
DraIII	CACNNNGTG	1 cut(s)	924
Eam1104I	CTCTTC	4 cut(s)	170, 950, 962, 1451
EarI	CTCTTC	4 cut(s)	170, 950, 962, 1451
Ecl136II	GAGCTC	1 cut(s)	999
Eco130I	CCWWGG	2 cut(s)	154, 774
Eco24I	GRGCYC	2 cut(s)	1001, 1098
Eco31I	GGTCTC	3 cut(s)	952, 1283, 1508
Eco32I	GATATC	1 cut(s)	1164
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	999
Eco57I	CTGAAG	1 cut(s)	657
Eco81I	CCTNAGG	1 cut(s)	906
Eco88I	CYCGRG	1 cut(s)	848
EcoICRI	GAGCTC	1 cut(s)	999
EcoRV	GATATC	1 cut(s)	1164
EcoT14I	CCWWGG	2 cut(s)	154, 774
EcoT38I	GRGCYC	2 cut(s)	1001, 1098
ErhI	CCWWGG	2 cut(s)	154, 774
FaeI	CATG	5 cut(s)	191, 418, 541, 551, 778
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	5 cut(s)	187, 414, 537, 547, 774
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	6 cut(s)	32, 933, 1104, 1260, 1509, 1563
FriOI	GRGCYC	2 cut(s)	1001, 1098
Fsp4HI	GCNGC	6 cut(s)	32, 933, 1104, 1260, 1509, 1563
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	6 cut(s)	32, 933, 1104, 1260, 1509, 1563
GsaI	CCCAGC	2 cut(s)	130, 1022
HaeIII	GGCC	1 cut(s)	1084
HapII	CCGG	2 cut(s)	939, 1499
Hin1II	CATG	5 cut(s)	191, 418, 541, 551, 778
HinfI	GANTC	6 cut(s)	98, 398, 475, 658, 724, 1032
HpaII	CCGG	2 cut(s)	939, 1499
HphI	GGTGA	5 cut(s)	595, 614, 902, 993, 1277
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	2 cut(s)	139, 574
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	9 cut(s)	176, 272, 311, 531, 610, 672, 803, 1171, 1291
HpyCH4III	ACNGT	4 cut(s)	74, 286, 630, 1139
HpyCH4V	TGCA	6 cut(s)	770, 1132, 1325, 1472, 1511, 1565
HpyF10VI	GCNNNNNNNGC	5 cut(s)	996, 1081, 1268, 1562, 1585
HpyF3I	CTNAG	5 cut(s)	222, 798, 906, 1340, 1479
Hsp92II	CATG	5 cut(s)	191, 418, 541, 551, 778
Kzo9I	GATC	4 cut(s)	87, 679, 730, 1428
LmnI	GCTCC	3 cut(s)	907, 996, 1093
Lsp1109I	GCAGC	6 cut(s)	18, 944, 1090, 1246, 1495, 1549
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	74, 1286
MalI	GATC	4 cut(s)	89, 681, 732, 1430
MboI	GATC	4 cut(s)	87, 679, 730, 1428
MhlI	GDGCHC	4 cut(s)	504, 1001, 1098, 1416
MluCI	AATT	2 cut(s)	622, 1087
MmeI	TCCRAC	2 cut(s)	798, 939
MroXI	GAANNNNTTC	1 cut(s)	1301
MseI	TTAA	4 cut(s)	240, 273, 344, 1400
MslI	CAYNNNNRTG	2 cut(s)	940, 1409
MspA1I	CMGCKG	1 cut(s)	1508
MspI	CCGG	2 cut(s)	939, 1499
MspR9I	CCNGG	1 cut(s)	939
MwoI	GCNNNNNNNGC	5 cut(s)	996, 1081, 1268, 1562, 1585
NciI	CCSGG	1 cut(s)	939
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	4 cut(s)	87, 679, 730, 1428
NlaIII	CATG	5 cut(s)	191, 418, 541, 551, 778
NlaIV	GGNNCC	4 cut(s)	378, 903, 974, 1095
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	1301
PfeI	GAWTC	6 cut(s)	98, 398, 475, 658, 724, 1032
PkrI	GCNGC	6 cut(s)	33, 934, 1105, 1261, 1510, 1564
Psp124BI	GAGCTC	1 cut(s)	1001
PspFI	CCCAGC	2 cut(s)	126, 1018
PspN4I	GGNNCC	4 cut(s)	378, 903, 974, 1095
PspPI	GGNCC	1 cut(s)	422
PsrI	GAACNNNNNNTAC	2 cut(s)	965, 997
PstI	CTGCAG	1 cut(s)	1513
PvuII	CAGCTG	1 cut(s)	1508
RsaI	GTAC	3 cut(s)	230, 1316, 1349
RsaNI	GTAC	3 cut(s)	229, 1315, 1348
RseI	CAYNNNNRTG	2 cut(s)	940, 1409
SacI	GAGCTC	1 cut(s)	1001
SaqAI	TTAA	4 cut(s)	240, 273, 344, 1400
SatI	GCNGC	6 cut(s)	32, 933, 1104, 1260, 1509, 1563
Sau3AI	GATC	4 cut(s)	87, 679, 730, 1428
Sau96I	GGNCC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	939
SduI	GDGCHC	4 cut(s)	504, 1001, 1098, 1416
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	2 cut(s)	831, 1509
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	940, 1409
SmlI	CTYRAG	6 cut(s)	323, 360, 381, 509, 1076, 1280
SmoI	CTYRAG	6 cut(s)	323, 360, 381, 509, 1076, 1280
Sse9I	AATT	2 cut(s)	622, 1087
SsiI	CCGC	2 cut(s)	560, 1556
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	1001
StyD4I	CCNGG	1 cut(s)	937
StyI	CCWWGG	2 cut(s)	154, 774
TaaI	ACNGT	4 cut(s)	74, 286, 630, 1139
TaqI	TCGA	3 cut(s)	597, 1305, 1520
TaqII	GACCGA	1 cut(s)	976
TasI	AATT	2 cut(s)	622, 1087
TatI	WGTACW	1 cut(s)	1314
TfiI	GAWTC	6 cut(s)	98, 398, 475, 658, 724, 1032
Tru1I	TTAA	4 cut(s)	240, 273, 344, 1400
Tru9I	TTAA	4 cut(s)	240, 273, 344, 1400
TscAI	CASTG	2 cut(s)	67, 562
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	6 cut(s)	31, 932, 1103, 1259, 1508, 1562
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	5 cut(s)	111, 443, 448, 980, 1269
TspGWI	ACGGA	4 cut(s)	25, 246, 519, 642
TspRI	CASTG	2 cut(s)	67, 562
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	1087
XceI	RCATGY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1222
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	1301
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.