Prupe.5G139100_v2.0.a1

Calnexin homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
13052153 .. 13054939
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G139100.1

Sequence Viewer

Length: 1626 bp
ATGGTTAGGGTTCGCGCTGGTGTCGTTCCGGTGCTGTTTCTGCTCGTAGCTTGCTTTTCATTTCAGCAGTTATTTGCTTCCGACGATACGGTCTTTTACGACTCATTTGATGAAACATTTGAAGGTCGCTGGACCGTTTCTAGCAAAGATGACTACCAAGGTGTGTGGACTCATTCAAAGAGTGAGGGACATGAGGATTATGGCCTTCTTGTGAGTGAGAAGGCTAAGAAGTACGCAATAGTGAGGGAGCTTGAGAAGCCTGTGAGTCTGAAGGATGGAACTGTCGTCCTCCAATTTGAGACTCGTCTCCAAAACGGGCTTGAATGTGGTGGTGCCTATCTGAAATACCTTCGACCGCAGGAGGCTGGATGGGAACCTAAGATATTCGACAATGAGTCTCCTTATTCGATCATGTTTGGACCTGACAAATGTGGACTCACAAACAAGGTTCACTTTATTTTTAAGCATAAGAATCCCAAGACCGGAGAGTACGTTGAGCACCATCTGACGACCCCTCCCTCTGTTCCATCTGACAAACTTTCTCATGTGTACACTGCCATTCTGAAACCTGACAATGAGTTGCGAATTCTAGTTGATGGGGAGGAGAAGAGGAAGGCGAATTTCCTATCAGCTGATGATTTTATGCCTCCTCTTATTCCTACCAAGACAATTCCTGATCCAGAAGATAAGAAGCCTGAGGATTGGGATGAGAGAGCCAAAATCCCAGACCCTAATGCTGTAAAGCCAGAGGACTGGGACGAGGATGCACCCCTTGAAATTGTAGATGAAGAAGCAGAGAAACCTGAAGGATGGTTGGATGATGAGCCTGAGGAGATAGATGATCCTGATGCCACAAAACCAGAAGATTGGGATGATGAGGAGGATGGTGAATTTGAAGCCCCAAAGATCGAAAACCCAAAGTGTGTGACAGCCCCTGGTTGTGGTGAATGGAAGAGGCCAATGAAGAGAAATCCAGCTTACAAGGGAAAATGGCATGCCCCACTCATCGACAACCCTAATTACAAGGGTATCTGGAAGCCTCAGGAGATTCCAAACCCCAGTTACTTTGAAGCCGACCAACCAGACTTTGAGCCTGTAGCTGCTGTTGGCATTGAGATTTGGACAATGCAAGATGGAATATTGTTCGACAACATTTTGATCACAAAAGATGAGAAAGTTGCAGAAACATACCGGGAAACCACCTGGAAACCAAAATTTGAAGTTGAGAAAGAGAAACAAAAGGATGAGGAAGATGTTCAGGGTTCAGAAGGGTTCCTCTCCAGCTTCCAGAAGAAAGTATTTGACCTCCTATACACCGTAGCTGATATTCCCTTCTTAAGTGCCCACAAGTCTAAGATAATTGATCTCATTGAAAAGGCAGAGCAACAACCGAATCTCACCGTTGGCATCATTGTCTCTATTGCGGTGATCATCTTCACAGTATTTATCAAGCTACTCTTTGGTGGGAAGAAACCTGCAATAGTTGAGAAGAAAACCACTGGAACCGCCGATGCTTCTAGCAGTGAGGAAAAGGAAGAAGAGAAGGAGAAGGAAGGTACTTCCTCTGAGAACGAGAAGGAAACAGCTGCTGCTCCCCGCCGAAGGACAGTAAGGCGTGAAAACTGA

Protein Analysis

542

Amino Acids

61.59

Weight (kDa)

4.74

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 1483
AccB1I GGYRCC 1 cut(s) 332
AccII CGCG 1 cut(s) 15
AciI CCGC 4 cut(s) 356, 1424, 1506, 1597
AclWI GGATC 2 cut(s) 671, 836
AcsI RAATTY 4 cut(s) 585, 619, 890, 1214
AcuI CTGAAG 2 cut(s) 290, 825
AfaI GTAC 4 cut(s) 233, 491, 551, 1558
AfiI CCNNNNNNNGG 3 cut(s) 482, 941, 1602
AflII CTTAAG 1 cut(s) 1336
AgsI TTSAA 8 cut(s) 122, 177, 323, 776, 896, 1070, 1220, 1373
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 2 cut(s) 934, 1202
AluBI AGCT 9 cut(s) 50, 250, 632, 977, 1100, 1284, 1322, 1453, 1586
AluI AGCT 9 cut(s) 50, 250, 632, 977, 1100, 1284, 1322, 1453, 1586
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 4 cut(s) 293, 311, 402, 1420
AlwI GGATC 2 cut(s) 671, 836
AlwNI CAGNNNCTG 2 cut(s) 935, 1589
AoxI GGCC 2 cut(s) 202, 956
ApeKI GCWGC 3 cut(s) 1100, 1586, 1589
ApoI RAATTY 4 cut(s) 585, 619, 890, 1214
Asp700I GAANNNNTTC 1 cut(s) 1254
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 132, 419
AsuC2I CCSGG 1 cut(s) 1193
AsuHPI GGTGA 4 cut(s) 899, 956, 1390, 1438
AvaII GGWCC 2 cut(s) 132, 419
AxyI CCTNAGG 3 cut(s) 696, 828, 1041
BaeGI GKGCMC 1 cut(s) 1345
BaeI ACNNNNGTAYC 2 cut(s) 1012, 1045
BanI GGYRCC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 3 cut(s) 1087, 1573, 1576
BccI CCATC 8 cut(s) 269, 363, 510, 535, 590, 804, 878, 1127
BciT130I CCWGG 2 cut(s) 936, 1204
BclI TGATCA 2 cut(s) 1158, 1428
BcnI CCSGG 1 cut(s) 1193
BcoDI GTCTC 4 cut(s) 293, 311, 402, 1420
BfaI CTAG 3 cut(s) 141, 590, 1518
BfmI CTRYAG 1 cut(s) 1095
BfrI CTTAAG 1 cut(s) 1336
BfuAI ACCTGC 1 cut(s) 1483
BisI GCNGC 3 cut(s) 1101, 1587, 1590
BlsI GCNGC 3 cut(s) 1102, 1588, 1591
Bme1390I CCNGG 3 cut(s) 936, 1193, 1204
Bme18I GGWCC 2 cut(s) 132, 419
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 132, 419
BmiI GGNNCC 4 cut(s) 334, 375, 1274, 1504
BmrFI CCNGG 3 cut(s) 936, 1193, 1204
BmrI ACTGGG 2 cut(s) 763, 1053
BmsI GCATC 4 cut(s) 754, 838, 1416, 1501
BmuI ACTGGG 2 cut(s) 763, 1053
BpmI CTGGAG 1 cut(s) 1264
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 1193
BsaJI CCNNGG 2 cut(s) 157, 934
BsaWI WCCGGW 2 cut(s) 28, 482
BsaXI ACNNNNNCTCC 4 cut(s) 477, 499, 507, 529
Bsc4I CCNNNNNNNGG 3 cut(s) 482, 941, 1602
Bse1I ACTGG 3 cut(s) 758, 1059, 1504
Bse21I CCTNAGG 3 cut(s) 696, 828, 1041
BseBI CCWGG 2 cut(s) 936, 1204
BseDI CCNNGG 2 cut(s) 157, 934
BseGI GGATG 9 cut(s) 280, 374, 712, 769, 815, 823, 877, 889, 1249
BseLI CCNNNNNNNGG 3 cut(s) 482, 941, 1602
BseMII CTCAG 4 cut(s) 687, 819, 1055, 1557
BseNI ACTGG 3 cut(s) 758, 1059, 1504
BseRI GAGGAG 4 cut(s) 617, 639, 845, 893
BseSI GKGCMC 1 cut(s) 1345
BseXI GCAGC 3 cut(s) 1087, 1573, 1576
Bsh1236I CGCG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 356
BshFI GGCC 2 cut(s) 204, 958
BshNI GGYRCC 1 cut(s) 332
BsiEI CGRYCG 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 3 cut(s) 29, 483, 1192
BslFI GGGAC 2 cut(s) 201, 770
BslI CCNNNNNNNGG 3 cut(s) 482, 941, 1602
BsmAI GTCTC 4 cut(s) 293, 311, 402, 1420
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 2 cut(s) 201, 770
BsnI GGCC 2 cut(s) 204, 958
Bsp1286I GDGCHC 2 cut(s) 501, 1345
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
BspACI CCGC 4 cut(s) 356, 1424, 1506, 1597
BspANI GGCC 2 cut(s) 204, 958
BspCNI CTCAG 4 cut(s) 688, 820, 1054, 1558
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 4 cut(s) 334, 375, 1274, 1504
BspMI ACCTGC 1 cut(s) 1483
BspPI GGATC 2 cut(s) 671, 836
BspT107I GGYRCC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 1336
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 3 cut(s) 758, 1059, 1504
BssECI CCNNGG 2 cut(s) 157, 934
BssMI GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 936, 1204
Bst4CI ACNGT 7 cut(s) 91, 136, 283, 1318, 1402, 1441, 1609
Bst6I CTCTTC 4 cut(s) 602, 947, 959, 1533
BstAFI CTTAAG 1 cut(s) 1336
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 52, 996
BstDEI CTNAG 7 cut(s) 225, 378, 696, 828, 1041, 1353, 1566
BstF5I GGATG 9 cut(s) 280, 374, 712, 769, 815, 823, 877, 889, 1249
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 7 cut(s) 411, 679, 844, 909, 1161, 1366, 1431
BstMAI GTCTC 4 cut(s) 293, 311, 402, 1420
BstMBI GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
BstMCI CGRYCG 1 cut(s) 356
BstMWI GCNNNNNNNGC 2 cut(s) 40, 256
BstNI CCWGG 2 cut(s) 936, 1204
BstNSI RCATGY 1 cut(s) 998
BstSCI CCNGG 3 cut(s) 934, 1191, 1202
BstSFI CTRYAG 1 cut(s) 1095
BstSLI GKGCMC 1 cut(s) 1345
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 1087, 1573, 1576
BstXI CCANNNNNNTGG 2 cut(s) 753, 867
Bsu36I CCTNAGG 3 cut(s) 696, 828, 1041
BsuRI GGCC 2 cut(s) 204, 958
BtsCI GGATG 9 cut(s) 280, 374, 712, 769, 815, 823, 877, 889, 1249
BtsI GCAGTG 2 cut(s) 552, 1528
BtsIMutI CAGTG 3 cut(s) 552, 1497, 1528
BveI ACCTGC 1 cut(s) 1483
Cac8I GCNNGC 2 cut(s) 52, 996
CaiI CAGNNNCTG 2 cut(s) 935, 1589
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 132, 419
Csp6I GTAC 4 cut(s) 232, 490, 550, 1557
CspCI CAANNNNNGTGG 2 cut(s) 146, 181
CviAII CATG 4 cut(s) 191, 412, 545, 995
CviQI GTAC 4 cut(s) 232, 490, 550, 1557
DdeI CTNAG 7 cut(s) 225, 378, 696, 828, 1041, 1353, 1566
DpnI GATC 7 cut(s) 410, 678, 843, 908, 1160, 1365, 1430
DpnII GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
DrdI GACNNNNNNGTC 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 394
DseDI GACNNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 4 cut(s) 602, 947, 959, 1533
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 4 cut(s) 602, 947, 959, 1533
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 132, 419
Eco57I CTGAAG 2 cut(s) 290, 825
Eco81I CCTNAGG 3 cut(s) 696, 828, 1041
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 2 cut(s) 934, 1202
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 4 cut(s) 194, 415, 548, 998
FaiI YATR 9 cut(s) 192, 201, 413, 468, 546, 644, 996, 1189, 1312
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 1442, 1474
FaqI GGGAC 2 cut(s) 201, 770
FatI CATG 4 cut(s) 190, 411, 544, 994
FauI CCCGC 1 cut(s) 1604
FbaI TGATCA 2 cut(s) 1158, 1428
Fnu4HI GCNGC 3 cut(s) 1101, 1587, 1590
FokI GGATG 9 cut(s) 287, 381, 719, 776, 822, 830, 884, 896, 1256
Fsp4HI GCNGC 3 cut(s) 1101, 1587, 1590
FspBI CTAG 3 cut(s) 141, 590, 1518
GlaI GCGC 1 cut(s) 16
GluI GCNGC 3 cut(s) 1101, 1587, 1590
GsuI CTGGAG 1 cut(s) 1264
HaeIII GGCC 2 cut(s) 204, 958
HapII CCGG 3 cut(s) 29, 483, 1192
HhaI GCGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 194, 415, 548, 998
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 9 cut(s) 101, 169, 265, 301, 395, 435, 472, 1048, 1393
HpaII CCGG 3 cut(s) 29, 483, 1192
HphI GGTGA 4 cut(s) 899, 956, 1390, 1438
Hpy166II GTNNAC 5 cut(s) 168, 434, 451, 550, 552
Hpy188I TCNGA 8 cut(s) 82, 270, 342, 507, 532, 564, 1267, 1567
Hpy188III TCNNGA 6 cut(s) 674, 680, 845, 1033, 1043, 1288
Hpy8I GTNNAC 5 cut(s) 168, 434, 451, 550, 552
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 7 cut(s) 91, 136, 283, 1318, 1402, 1441, 1609
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 4 cut(s) 767, 1129, 1181, 1478
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 256
HpyF3I CTNAG 7 cut(s) 225, 378, 696, 828, 1041, 1353, 1566
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 4 cut(s) 194, 415, 548, 998
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 2 cut(s) 1158, 1428
Kzo9I GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
LmnI GCTCC 2 cut(s) 247, 1597
Lsp1109I GCAGC 3 cut(s) 1087, 1573, 1576
LweI GCATC 4 cut(s) 754, 838, 1416, 1501
MaeI CTAG 3 cut(s) 141, 590, 1518
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 925, 1061
MalI GATC 7 cut(s) 410, 678, 843, 908, 1160, 1365, 1430
MboI GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
MhlI GDGCHC 2 cut(s) 501, 1345
MluCI AATT 9 cut(s) 293, 585, 619, 669, 777, 890, 1018, 1214, 1359
MlyI GAGTC 6 cut(s) 95, 163, 274, 295, 404, 429
MmeI TCCRAC 2 cut(s) 105, 795
MroXI GAANNNNTTC 1 cut(s) 1254
MseI TTAA 2 cut(s) 462, 1337
MspA1I CMGCKG 2 cut(s) 632, 1586
MspCI CTTAAG 1 cut(s) 1336
MspI CCGG 3 cut(s) 29, 483, 1192
MspR9I CCNGG 3 cut(s) 936, 1193, 1204
MvaI CCWGG 2 cut(s) 936, 1204
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 40, 256
NciI CCSGG 1 cut(s) 1193
NdeII GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
NlaIII CATG 4 cut(s) 194, 415, 548, 998
NlaIV GGNNCC 4 cut(s) 334, 375, 1274, 1504
NmuCI GTSAC 1 cut(s) 925
NspI RCATGY 1 cut(s) 998
PaeI GCATGC 1 cut(s) 998
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 3 cut(s) 472, 1048, 1393
PkrI GCNGC 3 cut(s) 1102, 1588, 1591
PleI GAGTC 6 cut(s) 95, 163, 273, 295, 403, 429
PpsI GAGTC 6 cut(s) 95, 163, 273, 295, 403, 429
Psp6I CCWGG 2 cut(s) 934, 1202
PspGI CCWGG 2 cut(s) 934, 1202
PspN4I GGNNCC 4 cut(s) 334, 375, 1274, 1504
PspPI GGNCC 2 cut(s) 132, 419
PstNI CAGNNNCTG 2 cut(s) 935, 1589
PvuII CAGCTG 2 cut(s) 632, 1586
RsaI GTAC 4 cut(s) 233, 491, 551, 1558
RsaNI GTAC 4 cut(s) 232, 490, 550, 1557
SaqAI TTAA 2 cut(s) 462, 1337
SatI GCNGC 3 cut(s) 1101, 1587, 1590
Sau3AI GATC 7 cut(s) 408, 676, 841, 906, 1158, 1363, 1428
Sau96I GGNCC 2 cut(s) 132, 419
SchI GAGTC 6 cut(s) 95, 163, 274, 295, 404, 429
ScrFI CCNGG 3 cut(s) 936, 1193, 1204
SduI GDGCHC 2 cut(s) 501, 1345
SfaNI GCATC 4 cut(s) 754, 838, 1416, 1501
SfcI CTRYAG 1 cut(s) 1095
SinI GGWCC 2 cut(s) 132, 419
SmlI CTYRAG 2 cut(s) 251, 1336
SmoI CTYRAG 2 cut(s) 251, 1336
SphI GCATGC 1 cut(s) 998
Sse9I AATT 9 cut(s) 293, 585, 619, 669, 777, 890, 1018, 1214, 1359
SsiI CCGC 4 cut(s) 356, 1424, 1506, 1597
SspI AATATT 1 cut(s) 1140
SspMI CTAG 3 cut(s) 141, 590, 1518
StyD4I CCNGG 3 cut(s) 934, 1191, 1202
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 7 cut(s) 91, 136, 283, 1318, 1402, 1441, 1609
TaiI ACGT 1 cut(s) 495
TaqI TCGA 6 cut(s) 352, 387, 407, 909, 1008, 1146
TasI AATT 9 cut(s) 293, 585, 619, 669, 777, 890, 1018, 1214, 1359
TatI WGTACW 1 cut(s) 549
TfiI GAWTC 3 cut(s) 472, 1048, 1393
Tru1I TTAA 2 cut(s) 462, 1337
Tru9I TTAA 2 cut(s) 462, 1337
TscAI CASTG 3 cut(s) 559, 1504, 1528
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 3 cut(s) 1100, 1586, 1589
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 4 cut(s) 48, 126, 801, 977
TspRI CASTG 3 cut(s) 559, 1504, 1528
Vha464I CTTAAG 1 cut(s) 1336
VpaK11BI GGWCC 2 cut(s) 132, 419
XapI RAATTY 4 cut(s) 585, 619, 890, 1214
XceI RCATGY 1 cut(s) 998
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 3 cut(s) 141, 590, 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.