Rh7CG227800

Neprosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0022732
Physical Location & Seq
Forward (+)
21215729 .. 21221657
5929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG227800.1

Sequence Viewer

Length: 270 bp
ATGAATAAGCAAAATGCTGGAGGTTATGGTACTCCAATTTTAGCTGCTTCTAAGAATTTGGGATTGAATGATGTTCTTACTTTTGAGGTGGAATGGGAAGAGAACATCGATCCTGATAACATGATATATGAGCTTTGGATATTAGGAGGGTCGTTTGGTGAAGATCTGAACAACATTGAAGTTGGTTGGCAGGTTAGCCCAGACCTCTATGGTGACAGCAACACTACTGTTTTTATCGATCTCAAAGGCCTCTGTTTTCTCCTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

89

Amino Acids

9.9

Weight (kDa)

4.05

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 44 - 80 1.6e-07 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022732)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0401901
rosa_rugosa Rorug07G0091000
rosa_samantha Rh5CG151900 Rh7CG227800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 31
AgsI TTSAA 2 cut(s) 67, 179
AluBI AGCT 2 cut(s) 44, 133
AluI AGCT 2 cut(s) 44, 133
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 170, 224
BbvI GCAGC 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 181
BglII AGATCT 1 cut(s) 163
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 39
Bsa29I ATCGAT 2 cut(s) 108, 237
BseCI ATCGAT 2 cut(s) 108, 237
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 249
BshVI ATCGAT 2 cut(s) 108, 237
BsnI GGCC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 109, 163, 238
BspANI GGCC 1 cut(s) 249
BspDI ATCGAT 2 cut(s) 108, 237
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 104
BssMI GATC 3 cut(s) 109, 163, 238
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 3 cut(s) 112, 166, 241
BstMBI GATC 3 cut(s) 109, 163, 238
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
Bsu15I ATCGAT 2 cut(s) 108, 237
BsuRI GGCC 1 cut(s) 249
BsuTUI ATCGAT 2 cut(s) 108, 237
BveI ACCTGC 1 cut(s) 181
ClaI ATCGAT 2 cut(s) 108, 237
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 121
CviJI RGCY 4 cut(s) 44, 133, 198, 249
CviKI_1 RGCY 4 cut(s) 44, 133, 198, 249
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 111, 165, 240
DpnII GATC 3 cut(s) 109, 163, 238
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 249
FaeI CATG 1 cut(s) 124
FaiI YATR 5 cut(s) 27, 122, 127, 129, 210
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 249
Hin1II CATG 1 cut(s) 124
HphI GGTGA 2 cut(s) 170, 224
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 3 cut(s) 109, 163, 238
LpnPI CCDG 4 cut(s) 3, 126, 176, 213
Lsp1109I GCAGC 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 212
MalI GATC 3 cut(s) 111, 165, 240
MboI GATC 3 cut(s) 109, 163, 238
MboII GAAGA 2 cut(s) 110, 173
MflI RGATCY 1 cut(s) 163
MluCI AATT 2 cut(s) 36, 55
MnlI CCTC 5 cut(s) 14, 79, 140, 215, 260
MseI TTAA 1 cut(s) 268
NdeII GATC 3 cut(s) 109, 163, 238
NlaIII CATG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 212
PceI AGGCCT 1 cut(s) 249
PkrI GCNGC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 109, 163, 238
SetI ASST 6 cut(s) 25, 46, 90, 135, 195, 207
SgeI CNNG 5 cut(s) 30, 125, 133, 203, 212
Sse9I AATT 2 cut(s) 36, 55
SseBI AGGCCT 1 cut(s) 249
StuI AGGCCT 1 cut(s) 249
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 108, 237
TasI AATT 2 cut(s) 36, 55
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.