Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0023544

Physical Location & Seq

Genomic Coordinates Forward (+)

59857452 .. 59858201

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG454600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCGTGTTAGAGGACTTCGTCCAAATGAGAGGACGTATACTACATTGATAGATGGATTCGCCCAACAAGGGTTCTTAAATGAAGCTTACGGTCTTCTGAATGATGCTGGAATGGTTATCAATGGACTTAACAAACGAGCTCGGACAAGAGAAGCAAAGAAGCTTCTACTCAAGTTGTTCTATGATAACTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATCAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACTTTATCATACATGGTCATTGTAGGGAAGGAAATGTTCAGAAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTTTCTTCCTCATACTGTGACTGTTATTGCGCTGATTAAAGAACTTTTCACTGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTCTGAGGAGCTGTCAGCTTACTGATGCTGAGCTTGCAAGGCTACTTGTTGAAACAAACCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTAGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAGCGCTTGTGCAAAGGGGGTAAATATTGTCTTATTAAAAAGAGAAAAAAAAAATTATATCAAGCATTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

249

Amino Acids

27.91

Weight (kDa)

8.85

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	4 - 34	3.4e-09	PPR repeat
PPR_1	PF12854	114 - 144	7e-07	PPR repeat
PPR_2	PF13041	116 - 163	4.8e-09	PPR repeat family
PPR	PF01535	121 - 149	8.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233241
rosa_samantha	Rh7AG435500 Rh7CG454600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	245
AfaI	GTAC	1 cut(s)	422
AfeI	AGCGCT	1 cut(s)	679
AfiI	CCNNNNNNNGG	3 cut(s)	69, 271, 668
AgsI	TTSAA	5 cut(s)	245, 320, 415, 587, 744
AluBI	AGCT	8 cut(s)	86, 140, 163, 231, 546, 553, 568, 747
AluI	AGCT	8 cut(s)	86, 140, 163, 231, 546, 553, 568, 747
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	659
Aor51HI	AGCGCT	1 cut(s)	679
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	475, 680
BalI	TGGCCA	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	47, 644
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	659
BfoI	RGCGCY	1 cut(s)	681
BisI	GCNGC	1 cut(s)	232
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	233
BmsI	GCATC	3 cut(s)	94, 550, 604
BpiI	GAAGAC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 271, 668
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	2 cut(s)	619, 655
BseLI	CCNNNNNNNGG	3 cut(s)	69, 271, 668
BseMII	CTCAG	4 cut(s)	486, 506, 530, 555
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	3 cut(s)	69, 271, 668
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	1 cut(s)	644
Bso31I	GGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	307, 327
Bsp1720I	GCTNAGC	1 cut(s)	564
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	4 cut(s)	487, 507, 531, 556
BspTNI	GGTCTC	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	2 cut(s)	307, 327
BssNAI	GTATAC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	645
Bst1107I	GTATAC	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	92, 325, 460, 466
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	570, 676
BstDEI	CTNAG	5 cut(s)	495, 515, 539, 564, 632
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	619, 655
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	475, 680
BstKTI	GATC	2 cut(s)	310, 330
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	2 cut(s)	307, 327
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 574
BstV1I	GCAGC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	619, 655
BtsIMutI	CAGTG	2 cut(s)	330, 492
Cac8I	GCNNGC	2 cut(s)	570, 676
CfoI	GCGC	2 cut(s)	475, 680
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	283, 377
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	5 cut(s)	495, 515, 539, 564, 632
DpnI	GATC	2 cut(s)	309, 329
DpnII	GATC	2 cut(s)	307, 327
EaeI	YGGCCR	1 cut(s)	642
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	659
Eco47III	AGCGCT	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	2 cut(s)	286, 380
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	282, 376
FbaI	TGATCA	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	2 cut(s)	626, 662
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	232
GlaI	GCGC	2 cut(s)	474, 679
GluI	GCNGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	644
HhaI	GCGC	2 cut(s)	475, 680
Hin1II	CATG	2 cut(s)	286, 380
Hin6I	GCGC	2 cut(s)	473, 678
HinP1I	GCGC	2 cut(s)	473, 678
HindIII	AAGCTT	2 cut(s)	84, 161
HinfI	GANTC	4 cut(s)	57, 276, 415, 517
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	4 cut(s)	99, 144, 405, 540
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	5 cut(s)	280, 386, 400, 596, 668
HpyCH4III	ACNGT	4 cut(s)	92, 325, 460, 466
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	234, 282, 572, 617, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 574
HpyF3I	CTNAG	5 cut(s)	495, 515, 539, 564, 632
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	286, 380
HspAI	GCGC	2 cut(s)	473, 678
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	307, 327
LmnI	GCTCC	3 cut(s)	353, 543, 671
LpnPI	CCDG	3 cut(s)	93, 210, 426
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	3 cut(s)	94, 550, 604
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	205, 460
MalI	GATC	2 cut(s)	309, 329
MboI	GATC	2 cut(s)	307, 327
MboII	GAAGA	2 cut(s)	86, 440
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	2 cut(s)	245, 727
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	1 cut(s)	526
MnlI	CCTC	6 cut(s)	5, 24, 327, 462, 490, 534
Mox20I	TGGCCA	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	6 cut(s)	77, 129, 249, 480, 624, 710
Msp20I	TGGCCA	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	739
MwoI	GCNNNNNNNGC	2 cut(s)	569, 574
NdeII	GATC	2 cut(s)	307, 327
NlaIII	CATG	2 cut(s)	286, 380
NmuCI	GTSAC	2 cut(s)	205, 460
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	3 cut(s)	57, 276, 415
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	6 cut(s)	77, 129, 249, 480, 624, 710
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	2 cut(s)	307, 327
SchI	GAGTC	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	3 cut(s)	94, 550, 604
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	245, 727
SspI	AATATT	1 cut(s)	700
SstI	GAGCTC	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	4 cut(s)	92, 325, 460, 466
TaiI	ACGT	1 cut(s)	38
TasI	AATT	2 cut(s)	245, 727
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	3 cut(s)	57, 276, 415
Tru1I	TTAA	6 cut(s)	77, 129, 249, 480, 624, 710
Tru9I	TTAA	6 cut(s)	77, 129, 249, 480, 624, 710
TscAI	CASTG	2 cut(s)	330, 499
TseFI	GTSAC	2 cut(s)	205, 460
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	2 cut(s)	205, 460
TspDTI	ATGAA	5 cut(s)	96, 299, 311, 518, 525
TspRI	CASTG	2 cut(s)	330, 499
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.