Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0031624

Physical Location & Seq

Genomic Coordinates Forward (+)

65809148 .. 65811316

Gene Structure 2169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG489200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGAGGTATGAGATTTTGCAGGATATTGGAGCTGGGAATTTTGCGGTGACAAAGTTGGTCAGAGAAAAGTGTAGCGGAAAACTCTATTGTATTAAGTTGATTGAGAGAGGCAAGAAGCCAAAATCTGTTGTGGGAACACCAAATTATATTGCACCTGAAGTCCTATCTAGAAAAAAATATGATGGAAAGATTTCAGATGTCTGGTCTTGTGGAGTCACCTTATTTGTCATGATCTTCGGGGCATATCCCTTTGAAGATCCTCAGGACCCTTTAAACTTTACAAAGACAATCCGGCGAATTCTTAGTGTACACTACTCAATCCCACAAAATATCGGAGTTTCCGGGGAATGTAGGCATCTGTTTTCTAAAATATTTGTGGCAAACCCAGAACAGGTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

134

Amino Acids

15.16

Weight (kDa)

9.21

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 132	1.9e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0031624)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8016466.1_g000001
rosa_samantha	Rh7CG489200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	47, 78
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	40, 300
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AlwI	GGATC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	40, 300
Asp700I	GAANNNNTTC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	61, 211
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	264
BccI	CCATC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	346
BfaI	CTAG	2 cut(s)	171, 403
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	295, 345
BslI	CCNNNNNNNGG	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	234, 259
BspACI	CCGC	2 cut(s)	47, 78
BspCNI	CTCAG	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	2 cut(s)	234, 259
BstAUI	TGTACA	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	264, 305
BstKTI	GATC	2 cut(s)	237, 262
BstMBI	GATC	2 cut(s)	234, 259
BstSCI	CCNGG	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	264
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	2 cut(s)	35, 121
CviKI_1	RGCY	2 cut(s)	35, 121
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	264, 305
DpnI	GATC	2 cut(s)	236, 261
DpnII	GATC	2 cut(s)	234, 259
DraI	TTTAAA	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	235
FaiI	YATR	5 cut(s)	12, 150, 183, 233, 247
FatI	CATG	1 cut(s)	231
FspBI	CTAG	2 cut(s)	171, 403
GsaI	CCCAGC	1 cut(s)	39
HapII	CCGG	2 cut(s)	295, 345
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	295, 345
HphI	GGTGA	2 cut(s)	61, 211
Hpy166II	GTNNAC	2 cut(s)	311, 313
Hpy188I	TCNGA	3 cut(s)	65, 199, 338
Hpy188III	TCNNGA	3 cut(s)	171, 232, 266
Hpy8I	GTNNAC	2 cut(s)	311, 313
HpyCH4V	TGCA	2 cut(s)	22, 155
HpyF3I	CTNAG	2 cut(s)	264, 305
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	234, 259
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	8 cut(s)	8, 21, 171, 190, 251, 308, 358, 380
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	171, 403
MaeIII	GTNAC	2 cut(s)	49, 217
MalI	GATC	2 cut(s)	236, 261
MboI	GATC	2 cut(s)	234, 259
MboII	GAAGA	2 cut(s)	229, 269
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	3 cut(s)	40, 145, 300
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	2 cut(s)	104, 273
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	96, 275
MspI	CCGG	2 cut(s)	295, 345
MspR9I	CCNGG	1 cut(s)	346
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	234, 259
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	49, 217
PagI	TCATGA	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	268
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	96, 275
Sau3AI	GATC	2 cut(s)	234, 259
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	5 cut(s)	11, 37, 160, 224, 399
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	3 cut(s)	40, 145, 300
SsiI	CCGC	2 cut(s)	47, 78
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	2 cut(s)	171, 403
StyD4I	CCNGG	1 cut(s)	344
TasI	AATT	3 cut(s)	40, 145, 300
TatI	WGTACW	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	96, 275
Tru9I	TTAA	2 cut(s)	96, 275
TseFI	GTSAC	2 cut(s)	49, 217
Tsp45I	GTSAC	2 cut(s)	49, 217
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	40, 300
XbaI	TCTAGA	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	2 cut(s)	171, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.