Rh7DG370200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0031995
Physical Location & Seq
Forward (+)
50123739 .. 50124035
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG370200.1

Sequence Viewer

Length: 297 bp
ATGGAGCCGGCGCCACCGTCAGTTGAAGATGATTGTGAGTTACTAGACATAGAGGCGGCGTCGCTGTCAATAGAAGATGATGATCGAGAAGAGCCAACTCCGTCGTCACGGCTTTCTTTGTCTTCCGAACCTCCGAAACGACACCACACCCCAGAAGAACCATCAACAATGATTCCTCCAAAACACCATCGTTGGATGGCGTTTTGGAGGAAATACTTAACTACTCCACAACTCGCTGCCGGGCAAGCATCAGTGATCCCTGACCTGCATAGCTCCCATCACTCAACTACTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.99

Weight (kDa)

5.04

Isoelectric Point (pI)

78.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0031995)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00234620
rosa_samantha Rh7DG370200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 10
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 11, 59
AgsI TTSAA 1 cut(s) 26
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
AlwI GGATC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 241
BanI GGYRCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 223
BccI CCATC 4 cut(s) 169, 190, 195, 285
BceAI ACGGC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 2 cut(s) 57, 237
BlsI GCNGC 2 cut(s) 58, 238
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 6, 12
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 81
BsaHI GRCGYC 2 cut(s) 11, 59
Bse118I RCCGGY 1 cut(s) 7
Bse8I GATNNNNATC 1 cut(s) 81
BseGI GGATG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 8, 240
Bsp143I GATC 2 cut(s) 82, 255
BspACI CCGC 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 6, 12
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 7
BssAI RCCGGY 1 cut(s) 7
BssMI GATC 2 cut(s) 82, 255
BssNI GRCGYC 2 cut(s) 11, 59
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 2 cut(s) 11, 59
BstC8I GCNNGC 2 cut(s) 9, 246
BstF5I GGATG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 2 cut(s) 85, 258
BstMBI GATC 2 cut(s) 82, 255
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 9, 246
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 7
CseI GACGC 1 cut(s) 48
CviJI RGCY 4 cut(s) 7, 94, 112, 273
CviKI_1 RGCY 4 cut(s) 7, 94, 112, 273
DinI GGCGCC 1 cut(s) 12
DpnI GATC 2 cut(s) 84, 257
DpnII GATC 2 cut(s) 82, 255
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaiI YATR 3 cut(s) 50, 270, 295
Fnu4HI GCNGC 2 cut(s) 57, 237
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 57, 237
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 12
GluI GCNGC 2 cut(s) 57, 237
HaeII RGCGCY 1 cut(s) 14
HapII CCGG 2 cut(s) 8, 240
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 11, 59
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 1 cut(s) 172
HpaII CCGG 2 cut(s) 8, 240
Hpy188I TCNGA 2 cut(s) 127, 135
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 64, 106
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92I GRCGYC 2 cut(s) 11, 59
HspAI GCGC 1 cut(s) 11
KasI GGCGCC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 82, 255
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 4, 278
LpnPI CCDG 5 cut(s) 21, 165, 253, 273, 278
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 2 cut(s) 39, 105
MalI GATC 2 cut(s) 84, 257
MboI GATC 2 cut(s) 82, 255
MboII GAAGA 5 cut(s) 38, 86, 101, 114, 167
Mly113I GGCGCC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 46, 141, 186, 201
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 1 cut(s) 218
MspI CCGG 2 cut(s) 8, 240
MspR9I CCNGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 245
NaeI GCCGGC 1 cut(s) 9
NarI GGCGCC 1 cut(s) 11
NciI CCSGG 1 cut(s) 241
NdeII GATC 2 cut(s) 82, 255
NgoMIV GCCGGC 1 cut(s) 7
NlaIV GGNNCC 2 cut(s) 6, 12
NmuCI GTSAC 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 58, 238
PluTI GGCGCC 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 6, 12
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 2 cut(s) 57, 237
Sau3AI GATC 2 cut(s) 82, 255
ScrFI CCNGG 1 cut(s) 241
SetI ASST 3 cut(s) 133, 267, 275
SfaNI GCATC 1 cut(s) 257
SfoI GGCGCC 1 cut(s) 12
SsiI CCGC 1 cut(s) 56
SspDI GGCGCC 1 cut(s) 10
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 85
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 258
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.