Rh7DG376500

Calcium-binding protein PBP1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0025570
Physical Location & Seq
Forward (+)
51192082 .. 51192579
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG376500.1

Sequence Viewer

Length: 498 bp
ATGGCTTCTCCTCAGCAAAAGGCACAAGCAAATTTCCAAGACTTGCTGCCCACTTTGGCTGACAAGGTCGGTGGGGATGGTTTGATCGGCAAGCTCTGTAATGGGTTCAATCTTTTGACGGATCCCGTCAAGGGGGTCATCACGTTCGAGAACCTCAAGAGGAACTCGACTCTTCTAGGCTTACAGAACTTAAGCGACAACGATCTACTGTCCAAGTTGCAGGAGGGCGCTTTCGACAACCATTGGATTCGGGTTTTGGGCTTTGCGAGCTGGGATTGGTGCTCCGGCCACTGGATTCGGGGCTTTACGAGCTTTACGACGCCGATCTCGTCGTACTTCTTGGTTTTGTGTGTGATTCTGGTGCTTATGGGTCCAATGAAGAGTTTTGGATTTTTGTTGAAGAATCCAATTGTCAAGGATTTGTTATTGTTGTTGATTTATGGTGTTGGAAAGAACTGGTTTTGGATCGAAGAGTTGAAATGGATGTATATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 map03420
Pfam Domains
Protein Families
EF-hand_8

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

7.65

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025570)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003876.1_g000015
rosa_samantha Rh7DG376500
rosa_wichuraiana Rw7G031770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 116, 129, 473
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 3 cut(s) 131, 132, 291
AflII CTTAAG 1 cut(s) 190
AgsI TTSAA 3 cut(s) 109, 400, 478
AluBI AGCT 3 cut(s) 94, 270, 312
AluI AGCT 3 cut(s) 94, 270, 312
Alw21I GWGCWC 1 cut(s) 284
AlwI GGATC 3 cut(s) 116, 129, 473
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 371
AvaII GGWCC 1 cut(s) 371
BamHI GGATCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 71
BfaI CTAG 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 190
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 123, 372
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 320
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 132, 291
Bse1I ACTGG 2 cut(s) 296, 461
BseGI GGATG 2 cut(s) 82, 489
BseLI CCNNNNNNNGG 3 cut(s) 131, 132, 291
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 296, 461
BseXI GCAGC 1 cut(s) 33
BseYI CCCAGC 1 cut(s) 270
BshFI GGCC 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 3 cut(s) 131, 132, 291
BsnI GGCC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 5 cut(s) 84, 121, 202, 324, 465
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 123, 372
BspPI GGATC 3 cut(s) 116, 129, 473
BspTI CTTAAG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 296, 461
BssMI GATC 5 cut(s) 84, 121, 202, 324, 465
BssNI GRCGYC 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 3 cut(s) 177, 374, 465
BstACI GRCGYC 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 92, 268
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 82, 489
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 5 cut(s) 87, 124, 205, 327, 468
BstMBI GATC 5 cut(s) 84, 121, 202, 324, 465
BstMWI GCNNNNNNNGC 2 cut(s) 267, 309
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 2 cut(s) 82, 489
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 92, 268
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 334
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviJI RGCY 9 cut(s) 5, 59, 94, 180, 261, 270, 288, 303, 312
CviKI_1 RGCY 9 cut(s) 5, 59, 94, 180, 261, 270, 288, 303, 312
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 1 cut(s) 12
DpnI GATC 5 cut(s) 86, 123, 204, 326, 467
DpnII GATC 5 cut(s) 84, 121, 202, 324, 465
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 177, 374, 465
EarI CTCTTC 3 cut(s) 177, 374, 465
Eco47I GGWCC 1 cut(s) 371
FaiI YATR 4 cut(s) 368, 441, 489, 491
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 47
GsaI CCCAGC 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 328
HhaI GCGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 320
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 5 cut(s) 169, 247, 295, 355, 403
HpaII CCGG 1 cut(s) 285
Hpy188III TCNNGA 2 cut(s) 148, 157
Hpy99I CGWCG 2 cut(s) 322, 334
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 309
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 320
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 5 cut(s) 84, 121, 202, 324, 465
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 6 cut(s) 206, 256, 277, 298, 344, 442
Lsp1109I GCAGC 1 cut(s) 33
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 143
MalI GATC 5 cut(s) 86, 123, 204, 326, 467
MboI GATC 5 cut(s) 84, 121, 202, 324, 465
MboII GAAGA 4 cut(s) 164, 391, 412, 482
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 31, 408
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 4 cut(s) 21, 153, 164, 217
MseI TTAA 1 cut(s) 191
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 267, 309
NdeII GATC 5 cut(s) 84, 121, 202, 324, 465
NlaIV GGNNCC 2 cut(s) 123, 372
PcsI WCGNNNNNNNCGW 2 cut(s) 314, 326
PfeI GAWTC 4 cut(s) 247, 295, 355, 403
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 123, 372
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 5 cut(s) 84, 121, 202, 324, 465
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 284
SetI ASST 6 cut(s) 69, 96, 146, 156, 272, 314
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 155, 190
SmoI CTYRAG 2 cut(s) 155, 190
Sse9I AATT 2 cut(s) 31, 408
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 146
TaqI TCGA 4 cut(s) 147, 167, 234, 468
TasI AATT 2 cut(s) 31, 408
TfiI GAWTC 4 cut(s) 247, 295, 355, 403
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 296
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 65
Vha464I CTTAAG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 31
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.