Rh7DG428700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
60583162 .. 60583491
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG428700.1

Sequence Viewer

Length: 330 bp
ATGGGGCTTTTTTATGATACTGAAAACAGGAAATTATGTTCTTCATTTCCTTGTTGCTCGAAAATTTATGCCTGTCAACAGTTAACAATGAAGATCTCAACAGTTAACAATGAAGATCTCATTTACTGCACCAAGGTGGATCTCTCGGTGAGCATGAATGCTGTCATGCTGACCTCTTCTCGTGTATCATTTGGGGAACTTCTAGTTTATGGTTTTGGTTCTTGCTCTATTTCAACTATTGGAATGCAATGTTTAGATCCTTTTTTCTTTTTGAAATTCAGATGTCCAATGGAGTCCCTCTTCACTCATGGTTTTATGCTTTTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

6.51

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030443)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0233821
rosa_samantha Rh7DG428700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 147, 251
AcsI RAATTY 2 cut(s) 63, 275
AgsI TTSAA 2 cut(s) 234, 274
AleI CACNNNNGTG 1 cut(s) 134
AloI GAACNNNNNNTCC 2 cut(s) 22, 54
AlwI GGATC 2 cut(s) 147, 251
ApoI RAATTY 2 cut(s) 63, 275
AsuHPI GGTGA 1 cut(s) 160
BauI CACGAG 1 cut(s) 180
BfaI CTAG 1 cut(s) 203
BglII AGATCT 2 cut(s) 93, 115
BsaJI CCNNGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 280
BsmI GAATGC 2 cut(s) 163, 249
Bsp143I GATC 4 cut(s) 93, 115, 139, 256
BspPI GGATC 2 cut(s) 147, 251
BsrDI GCAATG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 4 cut(s) 93, 115, 139, 256
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 81, 103
Bst6I CTCTTC 2 cut(s) 181, 305
BstKTI GATC 4 cut(s) 96, 118, 142, 259
BstMBI GATC 4 cut(s) 93, 115, 139, 256
BstX2I RGATCY 4 cut(s) 93, 115, 139, 256
BstYI RGATCY 4 cut(s) 93, 115, 139, 256
CviAII CATG 3 cut(s) 154, 166, 308
CviJI RGCY 1 cut(s) 7
CviKI_1 RGCY 1 cut(s) 7
DpnI GATC 4 cut(s) 95, 117, 141, 258
DpnII GATC 4 cut(s) 93, 115, 139, 256
Eam1104I CTCTTC 2 cut(s) 181, 305
EarI CTCTTC 2 cut(s) 181, 305
Eco130I CCWWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 157, 169, 311
FaiI YATR 9 cut(s) 15, 37, 69, 155, 167, 210, 309, 317, 328
FaqI GGGAC 1 cut(s) 280
FatI CATG 3 cut(s) 153, 165, 307
FspBI CTAG 1 cut(s) 203
Hin1II CATG 3 cut(s) 157, 169, 311
HincII GTYRAC 3 cut(s) 77, 84, 106
HindII GTYRAC 3 cut(s) 77, 84, 106
HinfI GANTC 1 cut(s) 293
HpaI GTTAAC 2 cut(s) 84, 106
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 3 cut(s) 77, 84, 106
Hpy188I TCNGA 1 cut(s) 281
Hpy8I GTNNAC 3 cut(s) 77, 84, 106
HpyCH4III ACNGT 2 cut(s) 81, 103
HpyCH4V TGCA 2 cut(s) 129, 247
Hsp92II CATG 3 cut(s) 157, 169, 311
KspAI GTTAAC 2 cut(s) 84, 106
Kzo9I GATC 4 cut(s) 93, 115, 139, 256
LpnPI CCDG 2 cut(s) 13, 85
MaeI CTAG 1 cut(s) 203
MalI GATC 4 cut(s) 95, 117, 141, 258
MboI GATC 4 cut(s) 93, 115, 139, 256
MboII GAAGA 5 cut(s) 33, 103, 125, 168, 292
MflI RGATCY 4 cut(s) 93, 115, 139, 256
MluCI AATT 3 cut(s) 32, 63, 275
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 2 cut(s) 184, 308
MseI TTAA 2 cut(s) 83, 105
MslI CAYNNNNRTG 1 cut(s) 134
Mva1269I GAATGC 2 cut(s) 163, 249
NdeII GATC 4 cut(s) 93, 115, 139, 256
NlaIII CATG 3 cut(s) 157, 169, 311
OliI CACNNNNGTG 1 cut(s) 134
PctI GAATGC 2 cut(s) 163, 249
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PsuI RGATCY 4 cut(s) 93, 115, 139, 256
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 83, 105
Sau3AI GATC 4 cut(s) 93, 115, 139, 256
SchI GAGTC 1 cut(s) 302
SetI ASST 2 cut(s) 138, 176
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 3 cut(s) 32, 63, 275
SspMI CTAG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 81, 103
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 32, 63, 275
Tru1I TTAA 2 cut(s) 83, 105
Tru9I TTAA 2 cut(s) 83, 105
TspDTI ATGAA 4 cut(s) 33, 104, 126, 170
XapI RAATTY 2 cut(s) 63, 275
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.