expressed protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom12g14000 |
| rosa_samantha | Rh7DG474500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 234 |
| AciI | CCGC | 4 cut(s) | 261, 328, 341, 352 |
| AclWI | GGATC | 3 cut(s) | 12, 65, 132 |
| AfaI | GTAC | 1 cut(s) | 212 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 118, 234 |
| AjnI | CCWGG | 1 cut(s) | 354 |
| AluBI | AGCT | 5 cut(s) | 154, 175, 225, 232, 346 |
| AluI | AGCT | 5 cut(s) | 154, 175, 225, 232, 346 |
| AlwI | GGATC | 3 cut(s) | 12, 65, 132 |
| ApeKI | GCWGC | 1 cut(s) | 343 |
| AsuHPI | GGTGA | 2 cut(s) | 298, 317 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 124 |
| BauI | CACGAG | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 355 |
| BciT130I | CCWGG | 1 cut(s) | 356 |
| BisI | GCNGC | 1 cut(s) | 344 |
| BlsI | GCNGC | 1 cut(s) | 345 |
| Bme1390I | CCNGG | 1 cut(s) | 356 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 356 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 1 cut(s) | 273 |
| BsaWI | WCCGGW | 1 cut(s) | 293 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 275, 293, 305, 323 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 118, 234 |
| BseBI | CCWGG | 1 cut(s) | 356 |
| BseDI | CCNNGG | 1 cut(s) | 273 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 118, 234 |
| BseXI | GCAGC | 1 cut(s) | 355 |
| BseYI | CCCAGC | 1 cut(s) | 150 |
| BsiSI | CCGG | 1 cut(s) | 294 |
| BslFI | GGGAC | 1 cut(s) | 206 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 118, 234 |
| BsmFI | GGGAC | 1 cut(s) | 206 |
| Bsp1286I | GDGCHC | 1 cut(s) | 124 |
| Bsp143I | GATC | 4 cut(s) | 4, 57, 64, 137 |
| Bsp19I | CCATGG | 1 cut(s) | 273 |
| BspACI | CCGC | 4 cut(s) | 261, 328, 341, 352 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 3 cut(s) | 12, 65, 132 |
| BssECI | CCNNGG | 1 cut(s) | 273 |
| BssMI | GATC | 4 cut(s) | 4, 57, 64, 137 |
| BssSI | CACGAG | 1 cut(s) | 51 |
| BssT1I | CCWWGG | 1 cut(s) | 273 |
| Bst2BI | CACGAG | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 1 cut(s) | 356 |
| BstDSI | CCRYGG | 1 cut(s) | 273 |
| BstKTI | GATC | 4 cut(s) | 7, 60, 67, 140 |
| BstMBI | GATC | 4 cut(s) | 4, 57, 64, 137 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 160 |
| BstNI | CCWGG | 1 cut(s) | 356 |
| BstSCI | CCNGG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 1 cut(s) | 355 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BtgI | CCRYGG | 1 cut(s) | 273 |
| Csp6I | GTAC | 1 cut(s) | 211 |
| CviAII | CATG | 4 cut(s) | 97, 214, 248, 274 |
| CviJI | RGCY | 9 cut(s) | 33, 122, 154, 175, 202, 225, 232, 242, 346 |
| CviKI_1 | RGCY | 9 cut(s) | 33, 122, 154, 175, 202, 225, 232, 242, 346 |
| CviQI | GTAC | 1 cut(s) | 211 |
| DpnI | GATC | 4 cut(s) | 6, 59, 66, 139 |
| DpnII | GATC | 4 cut(s) | 4, 57, 64, 137 |
| Eco130I | CCWWGG | 1 cut(s) | 273 |
| Eco24I | GRGCYC | 1 cut(s) | 124 |
| EcoRII | CCWGG | 1 cut(s) | 354 |
| EcoT14I | CCWWGG | 1 cut(s) | 273 |
| EcoT38I | GRGCYC | 1 cut(s) | 124 |
| ErhI | CCWWGG | 1 cut(s) | 273 |
| FaeI | CATG | 4 cut(s) | 100, 217, 251, 277 |
| FaiI | YATR | 6 cut(s) | 98, 215, 249, 275, 394, 396 |
| FaqI | GGGAC | 1 cut(s) | 206 |
| FatI | CATG | 4 cut(s) | 96, 213, 247, 273 |
| FauI | CCCGC | 2 cut(s) | 348, 359 |
| Fnu4HI | GCNGC | 1 cut(s) | 344 |
| FriOI | GRGCYC | 1 cut(s) | 124 |
| Fsp4HI | GCNGC | 1 cut(s) | 344 |
| GluI | GCNGC | 1 cut(s) | 344 |
| GsaI | CCCAGC | 1 cut(s) | 154 |
| HapII | CCGG | 1 cut(s) | 294 |
| Hin1II | CATG | 4 cut(s) | 100, 217, 251, 277 |
| HindIII | AAGCTT | 2 cut(s) | 173, 230 |
| HinfI | GANTC | 3 cut(s) | 49, 157, 320 |
| HpaII | CCGG | 1 cut(s) | 294 |
| HphI | GGTGA | 2 cut(s) | 298, 317 |
| Hpy188I | TCNGA | 1 cut(s) | 48 |
| Hpy188III | TCNNGA | 1 cut(s) | 68 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 191 |
| HpyAV | CCTTC | 2 cut(s) | 18, 151 |
| HpyCH4V | TGCA | 1 cut(s) | 300 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 160 |
| Hsp92II | CATG | 4 cut(s) | 100, 217, 251, 277 |
| Kzo9I | GATC | 4 cut(s) | 4, 57, 64, 137 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 4 cut(s) | 164, 307, 341, 368 |
| Lsp1109I | GCAGC | 1 cut(s) | 355 |
| MalI | GATC | 4 cut(s) | 6, 59, 66, 139 |
| MboI | GATC | 4 cut(s) | 4, 57, 64, 137 |
| MboII | GAAGA | 2 cut(s) | 3, 125 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MhlI | GDGCHC | 1 cut(s) | 124 |
| MluCI | AATT | 1 cut(s) | 107 |
| MlyI | GAGTC | 3 cut(s) | 43, 151, 314 |
| MmeI | TCCRAC | 1 cut(s) | 111 |
| MnlI | CCTC | 5 cut(s) | 122, 253, 263, 301, 319 |
| MspA1I | CMGCKG | 1 cut(s) | 154 |
| MspI | CCGG | 1 cut(s) | 294 |
| MspR9I | CCNGG | 1 cut(s) | 356 |
| MvaI | CCWGG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 160 |
| NcoI | CCATGG | 1 cut(s) | 273 |
| NdeII | GATC | 4 cut(s) | 4, 57, 64, 137 |
| NlaIII | CATG | 4 cut(s) | 100, 217, 251, 277 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 66 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 234 |
| PkrI | GCNGC | 1 cut(s) | 345 |
| PleI | GAGTC | 3 cut(s) | 43, 151, 314 |
| PpsI | GAGTC | 3 cut(s) | 43, 151, 314 |
| Psp6I | CCWGG | 1 cut(s) | 354 |
| PspFI | CCCAGC | 1 cut(s) | 150 |
| PspGI | CCWGG | 1 cut(s) | 354 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| PvuII | CAGCTG | 1 cut(s) | 154 |
| RsaI | GTAC | 1 cut(s) | 212 |
| RsaNI | GTAC | 1 cut(s) | 211 |
| SatI | GCNGC | 1 cut(s) | 344 |
| Sau3AI | GATC | 4 cut(s) | 4, 57, 64, 137 |
| SchI | GAGTC | 3 cut(s) | 43, 151, 314 |
| ScrFI | CCNGG | 1 cut(s) | 356 |
| SduI | GDGCHC | 1 cut(s) | 124 |
| SetI | ASST | 8 cut(s) | 156, 177, 227, 234, 293, 311, 348, 360 |
| SmlI | CTYRAG | 1 cut(s) | 254 |
| SmoI | CTYRAG | 1 cut(s) | 254 |
| Sse9I | AATT | 1 cut(s) | 107 |
| SsiI | CCGC | 4 cut(s) | 261, 328, 341, 352 |
| StyD4I | CCNGG | 1 cut(s) | 354 |
| StyI | CCWWGG | 1 cut(s) | 273 |
| TaqI | TCGA | 4 cut(s) | 60, 69, 136, 318 |
| TasI | AATT | 1 cut(s) | 107 |
| TatI | WGTACW | 1 cut(s) | 210 |
| TseI | GCWGC | 1 cut(s) | 343 |
| TspDTI | ATGAA | 2 cut(s) | 85, 167 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 234 |