Rw0G001770

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00051
OG0026703
Physical Location & Seq
Forward (+)
35905 .. 36950
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001770.1

Sequence Viewer

Length: 546 bp
ATGCAAGCAGTTTTGAATAGGAGAGGAAATCTCTCTAACACATTTCTGTCATATCCAGTAAAACCTCGGACCCTTTTAATTTCTAAGTGGTTTGAATATGGAAGATGGTTACATTTGTTACAAGTTTTGGAGTCTGACCATGGACTATCCGAGGGTCGATATCTCAATAGACTTAAATACACTCCATCTGACTTACTTCTTCACAGATTGTTTGTTTGTTCTACACAGCAAAAGTTGGCTAGTAAGGTGGCTAAGAAGGTTTTGATGCCCATTGGCCATAAAGTAATGGGTTTTGCCACTCGTGTGTTTCGACTATTCCTGTTAATCCCATTCTTTGTCATTGCAGCAGAGGGAACTGTTCAGGAGTTTAATGCTATTACGGGACTCCAGCATGAGTGGGGCATTAAACCTCCAAGTTGGAATGGTTCAGATGATCAGATCCTTGTGACAGCTGGGATGGTATTGAATGCACCAATTCCCAGATTACTGCTATTGTTGGAGTGGAAAGATCCCAGTGGTGAATATCAACTTAAAAATCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.76

Weight (kDa)

9.95

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026703)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66290
rosa_wichuraiana Rw0G001770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 433, 503
AcoI YGGCCR 1 cut(s) 274
AgsI TTSAA 3 cut(s) 16, 95, 466
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
AlwI GGATC 2 cut(s) 433, 503
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 276
BauI CACGAG 1 cut(s) 300
BbvI GCAGC 1 cut(s) 356
BccI CCATC 3 cut(s) 99, 193, 451
BclI TGATCA 1 cut(s) 433
BfaI CTAG 1 cut(s) 240
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 65, 139, 150
Bse1I ACTGG 2 cut(s) 56, 513
Bse3DI GCAATG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 65, 139, 150
BseGI GGATG 1 cut(s) 462
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 56, 513
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 1 cut(s) 276
BslFI GGGAC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 396
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 433, 438, 508
Bsp19I CCATGG 1 cut(s) 139
BspANI GGCC 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 2 cut(s) 433, 503
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 2 cut(s) 56, 513
BssECI CCNNGG 3 cut(s) 65, 139, 150
BssMI GATC 3 cut(s) 433, 438, 508
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 84, 252
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 3 cut(s) 436, 441, 511
BstMBI GATC 3 cut(s) 433, 438, 508
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 2 cut(s) 438, 508
BstYI RGATCY 2 cut(s) 438, 508
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 69
CviAII CATG 2 cut(s) 140, 392
CviJI RGCY 4 cut(s) 239, 251, 276, 452
CviKI_1 RGCY 4 cut(s) 239, 251, 276, 452
DdeI CTNAG 2 cut(s) 84, 252
DpnI GATC 3 cut(s) 435, 440, 510
DpnII GATC 3 cut(s) 433, 438, 508
EaeI YGGCCR 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 139
Eco32I GATATC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 69
EcoRV GATATC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 143, 395
FaiI YATR 5 cut(s) 52, 99, 141, 279, 393
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 139, 391
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 469
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 1 cut(s) 276
Hin1II CATG 2 cut(s) 143, 395
HinfI GANTC 2 cut(s) 131, 384
HphI GGTGA 1 cut(s) 530
Hpy188I TCNGA 7 cut(s) 69, 136, 151, 190, 430, 438, 540
Hpy188III TCNNGA 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 3 cut(s) 4, 344, 470
HpyF3I CTNAG 2 cut(s) 84, 252
Hsp92II CATG 2 cut(s) 143, 395
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 433, 438, 508
LpnPI CCDG 7 cut(s) 69, 332, 347, 401, 438, 493, 526
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 108, 117, 445
MalI GATC 3 cut(s) 435, 440, 510
MboI GATC 3 cut(s) 433, 438, 508
MboII GAAGA 2 cut(s) 114, 191
MflI RGATCY 2 cut(s) 438, 508
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 2 cut(s) 78, 474
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 2 cut(s) 140, 378
MmeI TCCRAC 2 cut(s) 398, 477
MnlI CCTC 5 cut(s) 17, 75, 145, 343, 420
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
MseI TTAA 6 cut(s) 77, 174, 323, 369, 405, 531
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 472
NcoI CCATGG 1 cut(s) 139
NdeII GATC 3 cut(s) 433, 438, 508
NlaIII CATG 2 cut(s) 143, 395
NlaIV GGNNCC 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 445
OliI CACNNNNGTG 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PctI GAATGC 1 cut(s) 472
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 2 cut(s) 139, 378
PpsI GAGTC 2 cut(s) 139, 378
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 2 cut(s) 438, 508
PvuII CAGCTG 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 6 cut(s) 77, 174, 323, 369, 405, 531
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 433, 438, 508
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 2 cut(s) 140, 378
SetI ASST 5 cut(s) 67, 249, 261, 412, 454
SfaNI GCATC 1 cut(s) 255
SinI GGWCC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 2 cut(s) 78, 474
SspMI CTAG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 157, 310
TasI AATT 2 cut(s) 78, 474
Tru1I TTAA 6 cut(s) 77, 174, 323, 369, 405, 531
Tru9I TTAA 6 cut(s) 77, 174, 323, 369, 405, 531
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 445
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 69
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.