Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0034316

Physical Location & Seq

Genomic Coordinates Reverse (-)

66849215 .. 66849963

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAACTTGGCCCAGTCAAAACAAAGATGCCTTCAGGACTGAGAAAGAGTATATGGAGTTGCATCTATGCTAGGCCTCAGTTGGTTTTGGAATACAAAACTTATGCTACACCAAAACTTAGTGAAGACAAAGTTAGGCAGTGCATTGATGCAAGACTAGGAGGACATAGTGAAGACAAAGTTGGGCAGGATCAAATTTTGAATGTACAGGCACGCTGCTTCCATTGCTGCAGGAAACCATGGGATTCCAGTGGTTGTTGTTGGGCATCATTTTGGACATGCAAGTGGGATGGCTCCTCGATCACAGTAATTAATCTACACCCGAGTCTCTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.74

Weight (kDa)

9.11

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034316)

Species	Orthologous Gene IDs
rosa_samantha	Rh1CG421100
rosa_wichuraiana	Rw1G039290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	10, 74
ApeKI	GCWGC	2 cut(s)	216, 228
ApoI	RAATTY	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	322
BbsI	GAAGAC	2 cut(s)	132, 180
BbvI	GCAGC	2 cut(s)	203, 215
BccI	CCATC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	72, 158
BfmI	CTRYAG	1 cut(s)	229
BisI	GCNGC	2 cut(s)	217, 229
BlsI	GCNGC	2 cut(s)	218, 230
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	4 cut(s)	18, 72, 139, 275
BmuI	ACTGGG	1 cut(s)	8
BpiI	GAAGAC	2 cut(s)	132, 180
BsaJI	CCNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	14, 249
Bse3DI	GCAATG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	32, 92
BseNI	ACTGG	2 cut(s)	14, 249
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	203, 215
BshFI	GGCC	2 cut(s)	12, 76
BsiHKCI	CYCGRG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	12, 76
BsoBI	CYCGRG	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	190, 300
Bsp19I	CCATGG	1 cut(s)	239
BspANI	GGCC	2 cut(s)	12, 76
BspCNI	CTCAG	2 cut(s)	33, 91
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	233
BspPI	GGATC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	14, 249
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	2 cut(s)	190, 300
BssT1I	CCWWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	41, 78, 119
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	2 cut(s)	193, 303
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	190, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	203, 215
BstV2I	GAAGAC	2 cut(s)	132, 180
BsuRI	GGCC	2 cut(s)	12, 76
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	146, 256
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	2 cut(s)	240, 279
CviJI	RGCY	3 cut(s)	12, 76, 294
CviKI_1	RGCY	3 cut(s)	12, 76, 294
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	3 cut(s)	41, 78, 119
DpnI	GATC	2 cut(s)	192, 302
DpnII	GATC	2 cut(s)	190, 300
Eco130I	CCWWGG	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	2 cut(s)	243, 282
FaiI	YATR	7 cut(s)	53, 55, 69, 105, 168, 241, 280
FatI	CATG	2 cut(s)	239, 278
Fnu4HI	GCNGC	2 cut(s)	217, 229
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	217, 229
FspBI	CTAG	2 cut(s)	72, 158
GluI	GCNGC	2 cut(s)	217, 229
HaeIII	GGCC	2 cut(s)	12, 76
Hin1II	CATG	2 cut(s)	243, 282
HinfI	GANTC	2 cut(s)	245, 325
Hpy188III	TCNNGA	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	5 cut(s)	63, 144, 152, 231, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	3 cut(s)	41, 78, 119
Hsp92II	CATG	2 cut(s)	243, 282
Kzo9I	GATC	2 cut(s)	190, 300
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	6 cut(s)	21, 27, 173, 194, 217, 262
Lsp1109I	GCAGC	2 cut(s)	203, 215
LweI	GCATC	4 cut(s)	18, 72, 139, 275
MaeI	CTAG	2 cut(s)	72, 158
MalI	GATC	2 cut(s)	192, 302
MboI	GATC	2 cut(s)	190, 300
MboII	GAAGA	2 cut(s)	137, 185
MluCI	AATT	2 cut(s)	195, 309
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	87, 155, 307
MseI	TTAA	2 cut(s)	312, 337
MslI	CAYNNNNRTG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	190, 300
NlaIII	CATG	2 cut(s)	243, 282
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	218, 230
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	312, 337
SatI	GCNGC	2 cut(s)	217, 229
Sau3AI	GATC	2 cut(s)	190, 300
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	334
SfaNI	GCATC	4 cut(s)	18, 72, 139, 275
SfcI	CTRYAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	195, 309
SseBI	AGGCCT	1 cut(s)	76
SspMI	CTAG	2 cut(s)	72, 158
StuI	AGGCCT	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	195, 309
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	312, 337
Tru9I	TTAA	2 cut(s)	312, 337
TscAI	CASTG	2 cut(s)	146, 256
TseI	GCWGC	2 cut(s)	216, 228
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	146, 256
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	282
XspI	CTAG	2 cut(s)	72, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.